Wall clock time and date at job start Tue Mar 31 2020 06:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47103 * 2 1 4 4 H 1.09001 * 109.46756 * 55.00353 * 3 2 1 5 5 C 1.52997 * 109.47268 * 295.00758 * 3 2 1 6 6 C 1.53001 * 109.46922 * 175.00390 * 3 2 1 7 7 N 1.46501 * 109.46827 * 185.00210 * 6 3 2 8 8 C 1.34779 * 119.99951 * 179.97438 * 7 6 3 9 9 O 1.21547 * 119.99647 * 0.02562 * 8 7 6 10 10 C 1.47859 * 119.99714 * 179.97438 * 8 7 6 11 11 C 1.39673 * 120.10367 * 359.72782 * 10 8 7 12 12 C 1.38036 * 120.03612 * 179.78621 * 11 10 8 13 13 C 1.38183 * 120.24411 * 0.46681 * 12 11 10 14 14 C 1.39180 * 120.20487 * 359.78622 * 13 12 11 15 15 S 1.76195 * 120.02255 * 179.97438 * 14 13 12 16 16 C 1.76195 * 100.00055 * 265.52875 * 15 14 13 17 17 H 1.08001 * 120.00260 * 5.11990 * 16 15 14 18 18 C 1.38734 * 119.99998 * 185.11941 * 16 15 14 19 19 N 1.31626 * 119.99912 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99765 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47326 * 60.00171 * 20 18 16 22 22 H 1.48502 * 109.46717 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47323 * 299.99729 * 20 18 16 24 24 C 1.38878 * 119.95474 * 359.97438 * 14 13 12 25 25 H 1.09000 * 109.46472 * 299.99571 * 1 2 3 26 26 H 1.08991 * 109.47715 * 59.99239 * 1 2 3 27 27 H 1.09002 * 109.46738 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46486 * 240.00986 * 2 1 3 29 29 H 1.08991 * 109.47715 * 120.00761 * 2 1 3 30 30 H 1.08995 * 109.47570 * 59.99729 * 5 3 2 31 31 H 1.09001 * 109.46901 * 299.99506 * 5 3 2 32 32 H 1.08997 * 109.46875 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.47150 * 305.00450 * 6 3 2 34 34 H 1.09004 * 109.47014 * 65.00556 * 6 3 2 35 35 H 0.96998 * 119.99751 * 0.02562 * 7 6 3 36 36 H 1.07998 * 119.97920 * 359.97438 * 11 10 8 37 37 H 1.08003 * 119.87922 * 180.21233 * 12 11 10 38 38 H 1.08008 * 119.89659 * 179.76429 * 13 12 11 39 39 H 0.96999 * 119.99495 * 180.02562 * 19 18 16 40 40 H 1.07992 * 120.11741 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3072 6 6 3.5649 1.4443 0.1256 7 7 4.0433 2.8238 0.2458 8 6 5.3624 3.0712 0.3693 9 8 6.1551 2.1499 0.3807 10 6 5.8453 4.4635 0.4900 11 6 4.9368 5.5243 0.4705 12 6 5.3887 6.8233 0.5876 13 6 6.7402 7.0812 0.7150 14 6 7.6549 6.0322 0.7304 15 16 9.3772 6.3666 0.8923 16 6 9.8451 6.3912 -0.8063 17 1 9.0919 6.3034 -1.5752 18 6 11.1811 6.5233 -1.1559 19 7 12.0992 6.6298 -0.2187 20 14 11.6772 6.5486 -2.9566 21 1 11.0139 7.6898 -3.6369 22 1 13.1510 6.6976 -3.0619 23 1 11.2614 5.2777 -3.6026 24 6 7.2090 4.7218 0.6180 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8935 -0.5139 0.8898 30 1 0.5489 2.1254 -1.3968 31 1 2.0698 1.5877 -2.1491 32 1 1.9989 3.1542 -1.3074 33 1 3.8572 0.8799 1.0111 34 1 4.0030 0.9837 -0.7599 35 1 3.4107 3.5590 0.2371 36 1 3.8799 5.3278 0.3666 37 1 4.6836 7.6414 0.5757 38 1 7.0880 8.1000 0.8025 39 1 13.0333 6.7225 -0.4632 40 1 7.9163 3.9058 0.6301 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421597313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:19 Heat of formation + Delta-G solvation = -58.382935 kcal Electronic energy + Delta-G solvation = -20135.515758 eV Core-core repulsion = 17039.436421 eV Total energy + Delta-G solvation = -3096.079337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27118 -39.30498 -38.03171 -35.07732 -34.66075 -32.37937 -31.91751 -30.48122 -27.82156 -27.72781 -25.22340 -23.95646 -23.31158 -21.76053 -20.98387 -19.95060 -18.97418 -17.39315 -16.99199 -16.93960 -16.67190 -16.53914 -15.84960 -15.63963 -15.30039 -15.10053 -14.70963 -14.60508 -14.38495 -13.93611 -13.71347 -13.26761 -13.08962 -12.96802 -12.93074 -12.86172 -12.65872 -12.40262 -12.37467 -11.79063 -11.76728 -11.58286 -11.45177 -11.25015 -11.11200 -10.75506 -10.28198 -9.89823 -9.70509 -8.81556 -8.39890 -6.20140 -0.18856 0.24971 1.28616 1.38212 1.44246 1.63849 1.79019 2.07826 2.24251 2.79880 2.93008 3.40985 3.65320 3.74429 3.91180 3.94206 3.99112 4.05070 4.35437 4.42828 4.47743 4.53412 4.62397 4.68603 4.74520 4.79386 4.87320 4.92065 5.11011 5.14177 5.18565 5.21934 5.24004 5.31374 5.36004 5.37368 5.50020 5.50461 5.53700 5.86130 6.14690 6.45871 7.00137 7.12945 8.67018 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023439 B = 0.003054 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.279871 B = 9167.251453 C = 9603.026953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.093 4.093 4 H 0.092 0.908 5 C -0.152 4.152 6 C 0.120 3.880 7 N -0.705 5.705 8 C 0.559 3.441 9 O -0.585 6.585 10 C -0.158 4.158 11 C -0.062 4.062 12 C -0.120 4.120 13 C -0.063 4.063 14 C -0.129 4.129 15 S -0.096 6.096 16 C -0.537 4.537 17 H 0.067 0.933 18 C 0.019 3.981 19 N -0.906 5.906 20 Si 0.992 3.008 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.046 4.046 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.416 0.584 36 H 0.174 0.826 37 H 0.177 0.823 38 H 0.136 0.864 39 H 0.274 0.726 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.024 -5.816 -0.693 27.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.111 4.111 4 H 0.110 0.890 5 C -0.209 4.209 6 C -0.003 4.003 7 N -0.358 5.358 8 C 0.347 3.653 9 O -0.466 6.466 10 C -0.163 4.163 11 C -0.081 4.081 12 C -0.139 4.139 13 C -0.084 4.084 14 C -0.240 4.240 15 S 0.139 5.861 16 C -0.684 4.684 17 H 0.085 0.915 18 C -0.186 4.186 19 N -0.542 5.542 20 Si 0.814 3.186 21 H -0.184 1.184 22 H -0.195 1.195 23 H -0.196 1.196 24 C -0.068 4.068 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.255 0.745 36 H 0.191 0.809 37 H 0.195 0.805 38 H 0.153 0.847 39 H 0.083 0.917 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -25.600 -6.296 0.308 26.364 hybrid contribution 0.285 -0.161 -1.784 1.814 sum -25.314 -6.457 -1.476 26.166 Atomic orbital electron populations 1.21791 0.94457 1.02085 1.02428 1.21506 0.96979 0.94905 1.02307 1.21365 0.91466 0.98182 1.00117 0.88998 1.21942 1.02476 1.00438 0.96061 1.21550 0.95505 0.81922 1.01306 1.45718 1.05984 1.10352 1.73725 1.18433 0.83027 0.88220 0.75579 1.90754 1.56495 1.47182 1.52217 1.19973 0.93812 0.93656 1.08825 1.21710 1.00047 0.91232 0.95105 1.21565 0.94639 0.97957 0.99742 1.22089 0.93736 0.98602 0.93940 1.22498 1.00380 0.95567 1.05564 1.83479 0.97590 1.92245 1.12834 1.23028 0.95711 1.58432 0.91199 0.91469 1.26023 0.95069 0.93683 1.03857 1.70105 1.01865 1.47220 1.35039 0.85098 0.77616 0.79253 0.76679 1.18423 1.19512 1.19613 1.21626 0.95202 0.95793 0.94189 0.92223 0.91912 0.92474 0.92014 0.91872 0.90599 0.93245 0.92182 0.92344 0.92769 0.74524 0.80868 0.80537 0.84652 0.91678 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.67 71.98 0.70 -0.53 16 2 C -0.12 -1.26 5.40 30.60 0.17 -1.10 16 3 C -0.09 -1.03 2.42 -10.79 -0.03 -1.06 16 4 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 5 C -0.15 -1.51 8.82 71.98 0.64 -0.87 16 6 C 0.12 2.27 5.06 86.38 0.44 2.71 16 7 N -0.70 -14.60 5.23 -465.95 -2.44 -17.04 16 8 C 0.56 18.06 7.77 86.79 0.67 18.73 16 9 O -0.59 -24.75 16.34 -3.86 -0.06 -24.82 16 10 C -0.16 -5.21 5.87 -20.11 -0.12 -5.33 16 11 C -0.06 -1.42 9.54 22.57 0.22 -1.20 16 12 C -0.12 -2.86 10.02 22.21 0.22 -2.63 16 13 C -0.06 -2.18 9.79 22.48 0.22 -1.96 16 14 C -0.13 -5.76 5.45 22.65 0.12 -5.64 16 15 S -0.10 -5.33 21.41 -56.49 -1.21 -6.54 16 16 C -0.54 -31.88 9.46 67.94 0.64 -31.24 16 17 H 0.07 3.94 7.79 -2.91 -0.02 3.92 16 18 C 0.02 1.10 5.49 84.84 0.47 1.56 16 19 N -0.91 -55.26 13.22 21.64 0.29 -54.97 16 20 Si 0.99 45.08 29.55 68.60 2.03 47.11 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 24 C -0.05 -2.00 9.34 22.70 0.21 -1.79 16 25 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.06 0.45 6.56 -2.39 -0.02 0.44 16 27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.55 6.56 -2.39 -0.02 0.54 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.54 7.18 -2.39 -0.02 0.53 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.42 5.41 5.68 -92.71 -0.53 4.88 16 36 H 0.17 1.98 6.40 -2.91 -0.02 1.97 16 37 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.10 5.00 7.65 -2.91 -0.02 4.98 16 Total: -1.00 -78.21 348.59 3.68 -74.53 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.51 Total: 12.08 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: 4.57 Total: -30.35 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -2.15 Total: -72.01 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.06 Total: -24.82 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -1.21 Total: -6.54 kcal Total: -78.21 3.68 -74.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421597313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.148 kcal (2) G-P(sol) polarization free energy of solvation -78.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds