Wall clock time and date at job start Tue Mar 31 2020 08:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 5 5 C 1.34773 * 120.00431 * 275.00470 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.50701 * 109.46923 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00145 * 359.97438 * 9 8 7 11 11 C 1.37869 * 120.00027 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00241 * 180.02562 * 11 9 8 13 13 Si 1.86809 * 119.99866 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.46710 * 90.00048 * 13 11 9 15 15 H 1.48500 * 109.46865 * 209.99357 * 13 11 9 16 16 H 1.48491 * 109.47392 * 329.99819 * 13 11 9 17 17 C 1.50691 * 109.47321 * 239.99926 * 2 1 3 18 18 C 1.38261 * 119.99687 * 279.72890 * 17 2 1 19 19 C 1.38219 * 119.99826 * 179.76980 * 18 17 2 20 20 C 1.38258 * 119.99693 * 0.49831 * 19 18 17 21 21 C 1.38212 * 120.00462 * 359.75689 * 20 19 18 22 22 N 1.48016 * 120.00135 * 179.97438 * 21 20 19 23 23 O 1.21806 * 119.99982 * 180.02562 * 22 21 20 24 24 O 1.21795 * 120.00158 * 0.02562 * 22 21 20 25 25 C 1.38213 * 120.00422 * 100.00081 * 17 2 1 26 26 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 28 28 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 29 29 H 0.97000 * 119.99456 * 95.00032 * 4 2 1 30 30 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 31 31 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 32 32 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 33 33 H 0.97003 * 119.99905 * 179.97438 * 12 11 9 34 34 H 1.07996 * 120.00530 * 359.97438 * 18 17 2 35 35 H 1.08000 * 120.00225 * 180.23368 * 19 18 17 36 36 H 1.08003 * 120.00046 * 179.72692 * 20 19 18 37 37 H 1.08003 * 119.99464 * 0.02562 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1617 2.4116 7 7 2.5910 -0.6548 3.4590 8 6 2.7250 0.0746 4.7225 9 6 3.2358 -0.8588 5.7896 10 1 3.4397 -1.8921 5.5508 11 6 3.4427 -0.3937 7.0709 12 7 3.8889 -1.2081 8.0021 13 14 3.0893 1.3935 7.4842 14 1 1.6790 1.5290 7.9291 15 1 3.9965 1.8386 8.5724 16 1 3.3114 2.2334 6.2800 17 6 2.0324 -0.7104 -1.2304 18 6 2.0721 -2.0920 -1.2631 19 6 2.5284 -2.7437 -2.3933 20 6 2.9548 -2.0138 -3.4873 21 6 2.9201 -0.6325 -3.4527 22 7 3.3772 0.1489 -4.6238 23 8 3.3470 1.3662 -4.5930 24 8 3.7834 -0.4253 -5.6181 25 6 2.4588 0.0193 -2.3240 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8898 28 1 -0.3632 0.5138 -0.8901 29 1 2.2490 -1.6317 1.1527 30 1 2.8216 -1.5960 3.4155 31 1 3.4269 0.8985 4.5936 32 1 1.7531 0.4685 5.0195 33 1 4.0349 -0.8807 8.9035 34 1 1.7435 -2.6622 -0.4067 35 1 2.5559 -3.8230 -2.4203 36 1 3.3155 -2.5229 -4.3689 37 1 2.4323 1.0986 -2.2966 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426427777.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:26 Heat of formation + Delta-G solvation = -9.731494 kcal Electronic energy + Delta-G solvation = -22346.529297 eV Core-core repulsion = 18706.266431 eV Total energy + Delta-G solvation = -3640.262866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.47011 -40.48223 -39.24319 -36.84701 -35.95011 -34.27676 -32.59833 -32.33757 -31.84614 -29.73839 -27.67168 -26.92992 -24.49677 -23.15632 -22.45258 -21.34024 -20.39772 -19.25937 -18.95571 -18.40135 -17.80357 -17.06737 -16.46675 -16.42036 -15.56560 -15.07137 -14.99459 -14.49471 -14.34907 -14.00308 -13.78578 -13.18695 -13.05370 -12.86127 -12.55685 -12.40052 -12.23193 -12.02467 -11.84637 -11.46040 -11.40786 -11.33056 -11.03487 -10.80597 -10.07601 -10.01383 -9.80411 -9.65628 -9.52035 -9.10760 -8.81436 -8.14677 -6.25585 -4.28092 -0.52442 0.42415 0.99095 1.07069 2.74541 3.05520 3.24404 3.31941 3.39748 3.62931 3.82484 3.97853 4.24830 4.29950 4.34771 4.45011 4.60915 4.78843 5.01739 5.04180 5.10234 5.11263 5.25829 5.39977 5.50404 5.52097 5.72530 5.83887 6.03903 6.11169 6.53301 6.63811 7.04673 7.13102 7.29542 7.34034 7.43797 8.20661 8.57772 8.73698 9.06473 9.34963 10.86294 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.028007 B = 0.002809 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.521098 B = 9963.923943 C =10174.962088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.203 3.797 3 H 0.104 0.896 4 N -0.752 5.752 5 C 0.697 3.303 6 O -0.599 6.599 7 N -0.720 5.720 8 C 0.238 3.762 9 C -0.544 4.544 10 H 0.079 0.921 11 C 0.078 3.922 12 N -0.892 5.892 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.260 1.260 17 C -0.082 4.082 18 C -0.061 4.061 19 C -0.111 4.111 20 C -0.058 4.058 21 C -0.041 4.041 22 N 0.028 4.972 23 O -0.157 6.157 24 O -0.162 6.162 25 C -0.044 4.044 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.392 0.608 30 H 0.392 0.608 31 H 0.024 0.976 32 H 0.019 0.981 33 H 0.268 0.732 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.945 -4.482 -22.306 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.097 3.903 3 H 0.121 0.879 4 N -0.410 5.410 5 C 0.396 3.604 6 O -0.478 6.478 7 N -0.372 5.372 8 C 0.116 3.884 9 C -0.582 4.582 10 H 0.097 0.903 11 C -0.126 4.126 12 N -0.530 5.530 13 Si 0.703 3.297 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.184 1.184 17 C -0.083 4.083 18 C -0.080 4.080 19 C -0.130 4.130 20 C -0.077 4.077 21 C -0.124 4.124 22 N 0.548 4.452 23 O -0.374 6.374 24 O -0.377 6.377 25 C -0.064 4.064 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.226 0.774 30 H 0.225 0.775 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.162 0.838 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.360 -3.753 -21.420 22.397 hybrid contribution 0.242 0.072 0.003 0.252 sum -5.118 -3.682 -21.417 22.326 Atomic orbital electron populations 1.22223 0.93803 1.02529 1.03284 1.19527 0.94265 0.96750 0.79794 0.87856 1.45247 1.73504 1.13366 1.08881 1.16070 0.78796 0.85208 0.80278 1.90882 1.57760 1.14473 1.84666 1.45413 1.68605 1.13835 1.09375 1.19384 0.96539 0.92899 0.79607 1.21071 1.46010 0.97837 0.93278 0.90325 1.24781 0.93976 0.97996 0.95846 1.69876 1.44664 1.35557 1.02869 0.86812 0.78786 0.85147 0.78926 1.19824 1.20898 1.18420 1.20079 0.98885 0.93867 0.95510 1.21508 0.94183 0.93944 0.98341 1.21229 0.98695 1.01149 0.91923 1.21106 0.95528 0.90745 1.00366 1.21083 1.10832 0.92131 0.88365 1.43625 0.98187 1.01401 1.01991 1.94569 1.58796 0.95478 1.88525 1.94534 1.48022 1.72744 1.22425 1.20912 0.93143 1.02380 0.89923 0.92265 0.90611 0.91635 0.77399 0.77456 0.95829 0.96265 0.92217 0.83821 0.83207 0.82886 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.46 37.16 0.35 -1.17 16 2 C 0.20 2.11 2.78 -69.08 -0.19 1.92 16 3 H 0.10 1.26 7.44 -51.93 -0.39 0.88 16 4 N -0.75 -9.14 5.03 -59.81 -0.30 -9.44 16 5 C 0.70 12.52 8.53 -86.92 -0.74 11.78 16 6 O -0.60 -13.13 16.01 5.28 0.08 -13.04 16 7 N -0.72 -13.87 5.55 -66.41 -0.37 -14.24 16 8 C 0.24 5.71 4.50 -5.19 -0.02 5.68 16 9 C -0.54 -14.56 9.83 -34.44 -0.34 -14.89 16 10 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 11 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 12 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 13 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.26 -6.22 6.54 56.52 0.37 -5.86 16 17 C -0.08 -0.67 4.96 -104.63 -0.52 -1.19 16 18 C -0.06 -0.37 9.06 -39.58 -0.36 -0.73 16 19 C -0.11 -0.58 10.05 -39.58 -0.40 -0.98 16 20 C -0.06 -0.40 9.56 -39.58 -0.38 -0.78 16 21 C -0.04 -0.39 6.85 -79.95 -0.55 -0.93 16 22 N 0.03 0.33 4.45 33.96 0.15 0.48 16 23 O -0.16 -2.02 18.45 -29.46 -0.54 -2.56 16 24 O -0.16 -1.97 18.45 -29.46 -0.54 -2.51 16 25 C -0.04 -0.39 9.18 -39.58 -0.36 -0.75 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.39 3.57 6.87 -40.82 -0.28 3.29 16 30 H 0.39 6.51 8.34 -40.82 -0.34 6.17 16 31 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 32 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.14 0.61 6.90 -52.49 -0.36 0.24 16 35 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 36 H 0.15 0.85 7.61 -52.48 -0.40 0.45 16 37 H 0.16 1.33 7.59 -52.48 -0.40 0.93 16 LS Contribution 328.48 15.07 4.95 4.95 Total: -1.00 -33.52 328.48 -8.27 -41.80 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -4.20 Total: 3.42 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -3.61 Total: 0.01 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.26 Total: -48.50 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -1.00 Total: -18.11 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.52 -8.27 -41.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426427777.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.067 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds