Wall clock time and date at job start Tue Mar 31 2020 08:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 5 5 C 1.34773 * 120.00431 * 275.00470 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.50701 * 109.46923 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00145 * 359.97438 * 9 8 7 11 11 C 1.37869 * 120.00027 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00241 * 180.02562 * 11 9 8 13 13 Si 1.86809 * 119.99866 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.46710 * 90.00048 * 13 11 9 15 15 H 1.48500 * 109.46865 * 209.99357 * 13 11 9 16 16 H 1.48491 * 109.47392 * 329.99819 * 13 11 9 17 17 C 1.50691 * 109.47321 * 239.99926 * 2 1 3 18 18 C 1.38261 * 119.99687 * 279.72890 * 17 2 1 19 19 C 1.38219 * 119.99826 * 179.76980 * 18 17 2 20 20 C 1.38258 * 119.99693 * 0.49831 * 19 18 17 21 21 C 1.38212 * 120.00462 * 359.75689 * 20 19 18 22 22 N 1.48016 * 120.00135 * 179.97438 * 21 20 19 23 23 O 1.21806 * 119.99982 * 180.02562 * 22 21 20 24 24 O 1.21795 * 120.00158 * 0.02562 * 22 21 20 25 25 C 1.38213 * 120.00422 * 100.00081 * 17 2 1 26 26 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 28 28 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 29 29 H 0.97000 * 119.99456 * 95.00032 * 4 2 1 30 30 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 31 31 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 32 32 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 33 33 H 0.97003 * 119.99905 * 179.97438 * 12 11 9 34 34 H 1.07996 * 120.00530 * 359.97438 * 18 17 2 35 35 H 1.08000 * 120.00225 * 180.23368 * 19 18 17 36 36 H 1.08003 * 120.00046 * 179.72692 * 20 19 18 37 37 H 1.08003 * 119.99464 * 0.02562 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1617 2.4116 7 7 2.5910 -0.6548 3.4590 8 6 2.7250 0.0746 4.7225 9 6 3.2358 -0.8588 5.7896 10 1 3.4397 -1.8921 5.5508 11 6 3.4427 -0.3937 7.0709 12 7 3.8889 -1.2081 8.0021 13 14 3.0893 1.3935 7.4842 14 1 1.6790 1.5290 7.9291 15 1 3.9965 1.8386 8.5724 16 1 3.3114 2.2334 6.2800 17 6 2.0324 -0.7104 -1.2304 18 6 2.0721 -2.0920 -1.2631 19 6 2.5284 -2.7437 -2.3933 20 6 2.9548 -2.0138 -3.4873 21 6 2.9201 -0.6325 -3.4527 22 7 3.3772 0.1489 -4.6238 23 8 3.3470 1.3662 -4.5930 24 8 3.7834 -0.4253 -5.6181 25 6 2.4588 0.0193 -2.3240 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8898 28 1 -0.3632 0.5138 -0.8901 29 1 2.2490 -1.6317 1.1527 30 1 2.8216 -1.5960 3.4155 31 1 3.4269 0.8985 4.5936 32 1 1.7531 0.4685 5.0195 33 1 4.0349 -0.8807 8.9035 34 1 1.7435 -2.6622 -0.4067 35 1 2.5559 -3.8230 -2.4203 36 1 3.3155 -2.5229 -4.3689 37 1 2.4323 1.0986 -2.2966 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426427777.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:26 Heat of formation + Delta-G solvation = -32.685431 kcal Electronic energy + Delta-G solvation = -22347.524655 eV Core-core repulsion = 18706.266431 eV Total energy + Delta-G solvation = -3641.258224 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.30024 -41.42144 -40.36745 -37.73301 -37.03480 -35.99728 -34.46661 -32.96988 -32.92447 -30.66852 -29.40810 -27.70490 -25.38896 -24.09543 -23.79298 -22.41822 -21.73940 -20.22468 -19.92391 -19.65395 -18.64759 -18.38625 -17.64838 -17.42805 -16.69594 -16.44404 -16.05917 -15.90099 -15.27415 -14.99624 -14.92676 -14.55997 -14.41251 -14.17247 -13.66589 -13.41746 -13.20051 -13.03356 -12.81155 -12.74254 -12.68812 -12.35226 -12.30454 -12.08026 -11.92863 -11.64182 -11.32388 -10.90878 -10.63796 -10.46823 -10.23371 -9.72179 -8.39092 -6.45563 -1.29005 -0.14677 0.25334 0.32645 1.34028 1.36697 1.49225 1.76016 2.17697 2.26915 2.29331 2.97024 3.10137 3.42463 3.44277 3.70561 3.79563 3.91992 3.96263 4.21405 4.30850 4.54927 4.65822 4.73406 4.76351 4.84802 4.94281 5.03330 5.06776 5.13132 5.23065 5.26702 5.44546 5.49011 5.54696 5.95583 6.26113 6.41492 6.56883 7.14505 7.25158 7.64764 8.75459 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.028007 B = 0.002809 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.521098 B = 9963.923943 C =10174.962088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.203 3.797 3 H 0.079 0.921 4 N -0.727 5.727 5 C 0.698 3.302 6 O -0.640 6.640 7 N -0.720 5.720 8 C 0.251 3.749 9 C -0.544 4.544 10 H 0.061 0.939 11 C 0.027 3.973 12 N -0.931 5.931 13 Si 0.935 3.065 14 H -0.265 1.265 15 H -0.275 1.275 16 H -0.261 1.261 17 C -0.086 4.086 18 C -0.050 4.050 19 C -0.095 4.095 20 C -0.053 4.053 21 C -0.060 4.060 22 N 0.030 4.970 23 O -0.200 6.200 24 O -0.163 6.163 25 C -0.052 4.052 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.411 0.589 30 H 0.406 0.594 31 H 0.009 0.991 32 H 0.010 0.990 33 H 0.272 0.728 34 H 0.171 0.829 35 H 0.190 0.810 36 H 0.169 0.831 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 -6.318 -23.256 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.098 3.902 3 H 0.098 0.902 4 N -0.386 5.386 5 C 0.397 3.603 6 O -0.522 6.522 7 N -0.374 5.374 8 C 0.127 3.873 9 C -0.582 4.582 10 H 0.079 0.921 11 C -0.173 4.173 12 N -0.570 5.570 13 Si 0.759 3.241 14 H -0.190 1.190 15 H -0.200 1.200 16 H -0.185 1.185 17 C -0.087 4.087 18 C -0.069 4.069 19 C -0.113 4.113 20 C -0.072 4.072 21 C -0.143 4.143 22 N 0.544 4.456 23 O -0.408 6.408 24 O -0.381 6.381 25 C -0.072 4.072 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.248 0.752 30 H 0.242 0.758 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.081 0.919 34 H 0.188 0.812 35 H 0.207 0.793 36 H 0.187 0.813 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.002 -5.579 -22.418 23.868 hybrid contribution 0.436 0.468 0.225 0.678 sum -5.566 -5.111 -22.192 23.443 Atomic orbital electron populations 1.22167 0.92842 1.03697 1.02605 1.19534 0.94980 0.95843 0.79851 0.90244 1.44992 1.72024 1.14077 1.07492 1.16151 0.78265 0.84726 0.81129 1.90858 1.59337 1.16521 1.85489 1.45085 1.69349 1.14339 1.08578 1.18944 0.95319 0.92162 0.80900 1.21273 1.45272 0.97543 0.94065 0.92054 1.25556 0.93958 1.01839 0.95960 1.69974 1.46120 1.37465 1.03464 0.85889 0.79073 0.80420 0.78698 1.18953 1.20045 1.18492 1.19772 1.00161 0.94768 0.94046 1.21858 0.92614 0.92847 0.99539 1.21654 0.96492 1.02842 0.90309 1.21482 0.94532 0.89556 1.01624 1.21232 1.12607 0.92911 0.87521 1.43988 0.97667 1.01364 1.02536 1.94565 1.60665 0.96470 1.89110 1.94496 1.47807 1.72532 1.23307 1.20877 0.93657 1.02303 0.90358 0.90116 0.93497 0.90128 0.75154 0.75848 0.97315 0.97170 0.91881 0.81189 0.79255 0.81324 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.46 71.98 0.68 -2.02 16 2 C 0.20 3.96 2.78 44.24 0.12 4.08 16 3 H 0.08 1.97 7.44 -2.39 -0.02 1.95 16 4 N -0.73 -16.22 5.03 -461.41 -2.32 -18.54 16 5 C 0.70 24.44 8.53 179.06 1.53 25.97 16 6 O -0.64 -28.16 16.01 -4.01 -0.06 -28.22 16 7 N -0.72 -27.06 5.55 -482.29 -2.68 -29.74 16 8 C 0.25 11.96 4.50 85.63 0.38 12.35 16 9 C -0.54 -29.10 9.83 25.60 0.25 -28.84 16 10 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 11 C 0.03 1.51 5.47 84.65 0.46 1.97 16 12 N -0.93 -54.61 13.96 21.44 0.30 -54.31 16 13 Si 0.94 43.37 27.47 68.60 1.88 45.26 16 14 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.26 -12.04 6.54 99.48 0.65 -11.38 16 17 C -0.09 -1.20 4.96 -19.87 -0.10 -1.30 16 18 C -0.05 -0.39 9.06 22.27 0.20 -0.19 16 19 C -0.09 -0.51 10.05 22.27 0.22 -0.29 16 20 C -0.05 -0.56 9.56 22.27 0.21 -0.35 16 21 C -0.06 -1.04 6.85 36.37 0.25 -0.79 16 22 N 0.03 0.71 4.45 -46.47 -0.21 0.50 16 23 O -0.20 -5.41 18.45 18.88 0.35 -5.06 16 24 O -0.16 -3.88 18.45 18.89 0.35 -3.54 16 25 C -0.05 -0.88 9.18 22.27 0.20 -0.68 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.41 6.07 6.87 -92.71 -0.64 5.43 16 30 H 0.41 12.86 8.34 -92.71 -0.77 12.09 16 31 H 0.01 0.45 7.20 -2.39 -0.02 0.44 16 32 H 0.01 0.51 7.57 -2.39 -0.02 0.50 16 33 H 0.27 14.90 8.31 -92.71 -0.77 14.12 16 34 H 0.17 0.45 6.90 -2.91 -0.02 0.43 16 35 H 0.19 -0.36 8.06 -2.91 -0.02 -0.39 16 36 H 0.17 1.27 7.61 -2.91 -0.02 1.24 16 37 H 0.15 2.66 7.59 -2.91 -0.02 2.63 16 Total: -1.00 -74.47 328.48 1.70 -72.77 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -0.34 Total: 10.97 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 4.42 Total: 9.91 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -4.91 Total: -102.09 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: 0.63 Total: -36.82 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.26 kcal Total: -74.47 1.70 -72.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426427777.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.082 kcal (2) G-P(sol) polarization free energy of solvation -74.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds