Wall clock time and date at job start Tue Mar 31 2020 08:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47031 * 2 1 4 4 N 1.46500 * 109.47560 * 239.99985 * 2 1 3 5 5 C 1.34773 * 119.99704 * 84.99678 * 4 2 1 6 6 O 1.21591 * 120.00455 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00104 * 180.02562 * 5 4 2 8 8 C 1.46493 * 120.00479 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47231 * 180.02562 * 8 7 5 10 10 H 1.07993 * 120.00210 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99581 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00383 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99640 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47532 * 59.99912 * 13 11 9 15 15 H 1.48499 * 109.47400 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47272 * 300.00073 * 13 11 9 17 17 C 1.50697 * 109.47417 * 119.99658 * 2 1 3 18 18 C 1.38265 * 119.99888 * 80.00199 * 17 2 1 19 19 C 1.38208 * 120.00352 * 179.70542 * 18 17 2 20 20 C 1.38257 * 119.99910 * 359.97438 * 19 18 17 21 21 C 1.38215 * 120.00125 * 0.02562 * 20 19 18 22 22 N 1.48024 * 120.00214 * 179.97438 * 21 20 19 23 23 O 1.21799 * 119.99792 * 0.02562 * 22 21 20 24 24 O 1.21803 * 119.99647 * 180.02562 * 22 21 20 25 25 C 1.38215 * 120.00726 * 259.73155 * 17 2 1 26 26 H 1.09002 * 109.46572 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47180 * 299.99903 * 1 2 3 28 28 H 1.09003 * 109.47132 * 60.00239 * 1 2 3 29 29 H 0.96998 * 120.00155 * 265.00370 * 4 2 1 30 30 H 0.97001 * 119.99622 * 359.97438 * 7 5 4 31 31 H 1.08997 * 109.47187 * 300.00059 * 8 7 5 32 32 H 1.09000 * 109.47122 * 59.99711 * 8 7 5 33 33 H 0.96999 * 120.00020 * 179.97438 * 12 11 9 34 34 H 1.08000 * 119.99335 * 359.72717 * 18 17 2 35 35 H 1.07992 * 120.00457 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.00097 * 180.02562 * 20 19 18 37 37 H 1.08001 * 119.99268 * 0.24980 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1616 -2.4116 7 7 2.5960 -0.6536 -3.4577 8 6 2.7364 0.0773 -4.7194 9 6 3.2517 -0.8550 -5.7854 10 1 3.4540 -1.8887 -5.5470 11 6 3.4640 -0.3885 -7.0654 12 7 3.2172 0.8702 -7.3559 13 14 4.1021 -1.5443 -8.3869 14 1 3.1455 -2.6657 -8.5678 15 1 4.2445 -0.8034 -9.6659 16 1 5.4241 -2.0827 -7.9774 17 6 2.0324 -0.7103 1.2305 18 6 2.0669 -2.0921 1.2654 19 6 2.5333 -2.7435 2.3915 20 6 2.9660 -2.0135 3.4830 21 6 2.9315 -0.6322 3.4482 22 7 3.3942 0.1494 4.6170 23 8 3.8058 -0.4247 5.6092 24 8 3.3634 1.3667 4.5863 25 6 2.4640 0.0194 2.3220 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 2.2491 -1.6317 -1.1526 30 1 2.8267 -1.5947 -3.4141 31 1 1.7661 0.4720 -5.0206 32 1 3.4381 0.9007 -4.5862 33 1 3.3669 1.1985 -8.2563 34 1 1.7296 -2.6623 0.4124 35 1 2.5606 -3.8228 2.4186 36 1 3.3309 -2.5225 4.3628 37 1 2.4374 1.0988 2.2946 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426427779.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:30 Heat of formation + Delta-G solvation = -13.394611 kcal Electronic energy + Delta-G solvation = -22292.576155 eV Core-core repulsion = 18652.154444 eV Total energy + Delta-G solvation = -3640.421711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.44172 -40.42012 -39.11842 -36.81966 -35.84649 -34.15252 -32.57493 -32.30629 -31.72584 -29.61658 -27.09834 -26.87155 -24.44923 -23.12226 -22.75154 -21.38892 -20.26765 -19.20161 -18.91378 -18.26674 -17.77630 -17.02855 -16.37637 -16.13691 -15.40777 -14.97318 -14.92668 -14.67766 -14.24415 -13.89807 -13.71141 -13.14867 -12.92245 -12.80304 -12.48478 -12.05047 -12.00908 -11.83848 -11.80938 -11.42734 -11.38164 -11.26417 -11.02034 -10.91531 -10.35446 -10.04078 -9.72234 -9.51243 -9.43986 -8.99712 -8.76260 -7.87408 -6.19960 -4.27119 -0.49487 0.45824 1.02023 1.09938 2.78811 3.15667 3.21976 3.27697 3.29384 3.76522 3.88819 4.01025 4.27994 4.28053 4.38642 4.48977 4.65074 4.93324 5.06564 5.11456 5.16180 5.16623 5.29672 5.43800 5.54483 5.57477 5.76850 5.89865 6.10193 6.14531 6.63452 6.97757 7.36827 7.41107 7.46422 7.50524 7.80706 7.96756 8.68484 8.83409 9.21902 9.40971 10.90166 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.002694 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.847415 B =10390.728996 C =10587.883783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.203 3.797 3 H 0.103 0.897 4 N -0.754 5.754 5 C 0.695 3.305 6 O -0.596 6.596 7 N -0.727 5.727 8 C 0.267 3.733 9 C -0.544 4.544 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.081 4.081 18 C -0.062 4.062 19 C -0.112 4.112 20 C -0.059 4.059 21 C -0.041 4.041 22 N 0.028 4.972 23 O -0.163 6.163 24 O -0.157 6.157 25 C -0.044 4.044 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.390 0.610 30 H 0.386 0.614 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.267 0.733 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 -9.247 20.432 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.096 3.904 3 H 0.121 0.879 4 N -0.412 5.412 5 C 0.394 3.606 6 O -0.475 6.475 7 N -0.379 5.379 8 C 0.146 3.854 9 C -0.583 4.583 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.522 5.522 13 Si 0.731 3.269 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.201 1.201 17 C -0.082 4.082 18 C -0.080 4.080 19 C -0.131 4.131 20 C -0.078 4.078 21 C -0.124 4.124 22 N 0.548 4.452 23 O -0.378 6.378 24 O -0.373 6.373 25 C -0.064 4.064 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.224 0.776 30 H 0.218 0.782 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.818 -8.347 19.581 21.626 hybrid contribution 0.720 -1.294 -0.398 1.533 sum -3.099 -9.641 19.183 21.692 Atomic orbital electron populations 1.22224 0.93884 1.02429 1.03288 1.19513 0.94222 0.96781 0.79843 0.87874 1.45287 1.73742 1.13244 1.08951 1.16111 0.78963 0.85276 0.80226 1.90890 1.57620 1.14429 1.84519 1.45737 1.68303 1.13608 1.10243 1.18998 0.97310 0.91993 0.77077 1.21171 1.46143 0.96440 0.94523 0.92023 1.24943 0.95199 0.95326 0.98504 1.69961 1.47147 1.14090 1.20989 0.86471 0.79341 0.80473 0.80573 1.20089 1.21035 1.20091 1.20110 0.98711 0.93856 0.95539 1.21504 0.94243 0.93973 0.98287 1.21215 0.98732 1.01098 0.92016 1.21094 0.95658 0.90748 1.00319 1.21086 1.10732 0.92120 0.88474 1.43629 0.98197 1.01405 1.01968 1.94532 1.47927 1.72752 1.22586 1.94570 1.58909 0.95475 1.88375 1.20926 0.93075 1.02420 0.89933 0.92364 0.91703 0.90557 0.77630 0.78180 0.95652 0.95680 0.92335 0.83855 0.83270 0.82927 0.82541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.46 37.16 0.35 -1.27 16 2 C 0.20 2.24 2.78 -69.08 -0.19 2.05 16 3 H 0.10 1.34 7.44 -51.93 -0.39 0.96 16 4 N -0.75 -9.67 5.03 -59.81 -0.30 -9.97 16 5 C 0.69 13.19 8.53 -86.92 -0.74 12.45 16 6 O -0.60 -13.93 16.01 5.29 0.08 -13.84 16 7 N -0.73 -14.64 5.55 -66.42 -0.37 -15.01 16 8 C 0.27 6.93 5.43 -5.20 -0.03 6.90 16 9 C -0.54 -14.43 9.28 -34.44 -0.32 -14.75 16 10 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.88 -25.71 13.29 55.43 0.74 -24.98 16 13 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 C -0.08 -0.69 4.95 -104.62 -0.52 -1.21 16 18 C -0.06 -0.39 9.05 -39.58 -0.36 -0.75 16 19 C -0.11 -0.61 10.05 -39.59 -0.40 -1.01 16 20 C -0.06 -0.42 9.56 -39.58 -0.38 -0.80 16 21 C -0.04 -0.40 6.85 -79.95 -0.55 -0.95 16 22 N 0.03 0.34 4.45 33.96 0.15 0.49 16 23 O -0.16 -2.01 18.45 -29.46 -0.54 -2.56 16 24 O -0.16 -2.06 18.45 -29.46 -0.54 -2.60 16 25 C -0.04 -0.41 9.18 -39.58 -0.36 -0.77 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.39 3.75 6.89 -40.82 -0.28 3.47 16 30 H 0.39 6.52 8.34 -40.82 -0.34 6.18 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.14 0.64 6.93 -52.49 -0.36 0.28 16 35 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 36 H 0.15 0.88 7.61 -52.49 -0.40 0.48 16 37 H 0.16 1.40 7.59 -52.49 -0.40 1.00 16 LS Contribution 332.12 15.07 5.00 5.00 Total: -1.00 -33.49 332.12 -8.63 -42.12 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.24 Total: 4.37 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -3.59 Total: 1.54 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.22 Total: -49.46 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -1.00 Total: -19.00 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.49 -8.63 -42.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426427779.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.724 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds