Wall clock time and date at job start Tue Mar 31 2020 08:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47031 * 2 1 4 4 N 1.46500 * 109.47560 * 239.99985 * 2 1 3 5 5 C 1.34773 * 119.99704 * 84.99678 * 4 2 1 6 6 O 1.21591 * 120.00455 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00104 * 180.02562 * 5 4 2 8 8 C 1.46493 * 120.00479 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47231 * 180.02562 * 8 7 5 10 10 H 1.07993 * 120.00210 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99581 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00383 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99640 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47532 * 59.99912 * 13 11 9 15 15 H 1.48499 * 109.47400 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47272 * 300.00073 * 13 11 9 17 17 C 1.50697 * 109.47417 * 119.99658 * 2 1 3 18 18 C 1.38265 * 119.99888 * 80.00199 * 17 2 1 19 19 C 1.38208 * 120.00352 * 179.70542 * 18 17 2 20 20 C 1.38257 * 119.99910 * 359.97438 * 19 18 17 21 21 C 1.38215 * 120.00125 * 0.02562 * 20 19 18 22 22 N 1.48024 * 120.00214 * 179.97438 * 21 20 19 23 23 O 1.21799 * 119.99792 * 0.02562 * 22 21 20 24 24 O 1.21803 * 119.99647 * 180.02562 * 22 21 20 25 25 C 1.38215 * 120.00726 * 259.73155 * 17 2 1 26 26 H 1.09002 * 109.46572 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47180 * 299.99903 * 1 2 3 28 28 H 1.09003 * 109.47132 * 60.00239 * 1 2 3 29 29 H 0.96998 * 120.00155 * 265.00370 * 4 2 1 30 30 H 0.97001 * 119.99622 * 359.97438 * 7 5 4 31 31 H 1.08997 * 109.47187 * 300.00059 * 8 7 5 32 32 H 1.09000 * 109.47122 * 59.99711 * 8 7 5 33 33 H 0.96999 * 120.00020 * 179.97438 * 12 11 9 34 34 H 1.08000 * 119.99335 * 359.72717 * 18 17 2 35 35 H 1.07992 * 120.00457 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.00097 * 180.02562 * 20 19 18 37 37 H 1.08001 * 119.99268 * 0.24980 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1616 -2.4116 7 7 2.5960 -0.6536 -3.4577 8 6 2.7364 0.0773 -4.7194 9 6 3.2517 -0.8550 -5.7854 10 1 3.4540 -1.8887 -5.5470 11 6 3.4640 -0.3885 -7.0654 12 7 3.2172 0.8702 -7.3559 13 14 4.1021 -1.5443 -8.3869 14 1 3.1455 -2.6657 -8.5678 15 1 4.2445 -0.8034 -9.6659 16 1 5.4241 -2.0827 -7.9774 17 6 2.0324 -0.7103 1.2305 18 6 2.0669 -2.0921 1.2654 19 6 2.5333 -2.7435 2.3915 20 6 2.9660 -2.0135 3.4830 21 6 2.9315 -0.6322 3.4482 22 7 3.3942 0.1494 4.6170 23 8 3.8058 -0.4247 5.6092 24 8 3.3634 1.3667 4.5863 25 6 2.4640 0.0194 2.3220 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 2.2491 -1.6317 -1.1526 30 1 2.8267 -1.5947 -3.4141 31 1 1.7661 0.4720 -5.0206 32 1 3.4381 0.9007 -4.5862 33 1 3.3669 1.1985 -8.2563 34 1 1.7296 -2.6623 0.4124 35 1 2.5606 -3.8228 2.4186 36 1 3.3309 -2.5225 4.3628 37 1 2.4374 1.0988 2.2946 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426427779.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:29 Heat of formation + Delta-G solvation = -36.395363 kcal Electronic energy + Delta-G solvation = -22293.573543 eV Core-core repulsion = 18652.154444 eV Total energy + Delta-G solvation = -3641.419098 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.29945 -41.40207 -40.34453 -37.73235 -37.00447 -35.98985 -34.42778 -32.94328 -32.86263 -30.55846 -28.95209 -27.70115 -25.47915 -24.45545 -23.79406 -22.43761 -21.70760 -20.16109 -19.90384 -19.62368 -18.64750 -18.10702 -17.58595 -17.41685 -16.73502 -16.38835 -16.14999 -15.84851 -15.21330 -14.94784 -14.87646 -14.53170 -14.10173 -14.00313 -13.62184 -13.40755 -13.19458 -12.92782 -12.80727 -12.73976 -12.66433 -12.35250 -12.30321 -12.22843 -12.08250 -11.48928 -11.27878 -10.78480 -10.63339 -10.44774 -10.21572 -9.63915 -8.27403 -6.43825 -1.28800 -0.14447 0.25583 0.32787 1.44346 1.48458 1.56437 1.79025 2.20845 2.27985 2.40301 3.07819 3.10453 3.43726 3.49522 3.70806 3.80085 3.92464 3.96476 4.21233 4.30726 4.54968 4.65984 4.74589 4.82783 4.93215 5.01244 5.09850 5.15431 5.22569 5.28638 5.45005 5.49012 5.50341 5.67405 5.85985 6.22392 6.41633 6.68082 7.25197 7.30110 7.71283 8.84632 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.002694 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.847415 B =10390.728996 C =10587.883783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.203 3.797 3 H 0.075 0.925 4 N -0.726 5.726 5 C 0.694 3.306 6 O -0.645 6.645 7 N -0.721 5.721 8 C 0.286 3.714 9 C -0.554 4.554 10 H 0.086 0.914 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.985 3.015 14 H -0.261 1.261 15 H -0.288 1.288 16 H -0.262 1.262 17 C -0.086 4.086 18 C -0.050 4.050 19 C -0.094 4.094 20 C -0.052 4.052 21 C -0.060 4.060 22 N 0.030 4.970 23 O -0.160 6.160 24 O -0.203 6.203 25 C -0.054 4.054 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.411 0.589 30 H 0.406 0.594 31 H -0.014 1.014 32 H -0.016 1.016 33 H 0.268 0.732 34 H 0.172 0.828 35 H 0.192 0.808 36 H 0.170 0.830 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 -13.751 20.868 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.097 3.903 3 H 0.093 0.907 4 N -0.385 5.385 5 C 0.394 3.606 6 O -0.527 6.527 7 N -0.375 5.375 8 C 0.162 3.838 9 C -0.592 4.592 10 H 0.104 0.896 11 C -0.196 4.196 12 N -0.570 5.570 13 Si 0.808 3.192 14 H -0.185 1.185 15 H -0.213 1.213 16 H -0.187 1.187 17 C -0.087 4.087 18 C -0.068 4.068 19 C -0.112 4.112 20 C -0.071 4.071 21 C -0.143 4.143 22 N 0.545 4.455 23 O -0.379 6.379 24 O -0.410 6.410 25 C -0.073 4.073 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.249 0.751 30 H 0.241 0.759 31 H 0.004 0.996 32 H 0.002 0.998 33 H 0.077 0.923 34 H 0.189 0.811 35 H 0.209 0.791 36 H 0.188 0.812 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.610 -12.853 20.080 24.114 hybrid contribution 0.619 0.030 -0.437 0.758 sum -2.991 -12.823 19.644 23.649 Atomic orbital electron populations 1.22164 0.92913 1.03739 1.02457 1.19511 0.94967 0.95757 0.80046 0.90689 1.44962 1.72169 1.13998 1.07354 1.16251 0.78361 0.84733 0.81291 1.90863 1.59410 1.16945 1.85486 1.45271 1.68947 1.14242 1.09021 1.18394 0.94065 0.91606 0.79706 1.21579 1.45611 0.97392 0.94645 0.89640 1.26059 0.95205 0.96975 1.01383 1.70135 1.48595 1.16586 1.21690 0.85213 0.79240 0.78095 0.76685 1.18518 1.21340 1.18700 1.19760 1.00169 0.94867 0.93912 1.21861 0.92634 0.92701 0.99570 1.21661 0.96363 1.02874 0.90273 1.21494 0.94551 0.89455 1.01633 1.21231 1.12489 0.92946 0.87592 1.43991 0.97685 1.01363 1.02510 1.94490 1.47505 1.72518 1.23412 1.94571 1.60978 0.96492 1.89009 1.20870 0.93721 1.02251 0.90486 0.89896 0.90122 0.93837 0.75104 0.75872 0.99563 0.99819 0.92285 0.81070 0.79066 0.81213 0.83660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.46 71.98 0.68 -2.31 16 2 C 0.20 4.35 2.78 44.24 0.12 4.47 16 3 H 0.07 2.07 7.44 -2.38 -0.02 2.05 16 4 N -0.73 -17.57 5.03 -461.41 -2.32 -19.89 16 5 C 0.69 26.64 8.53 179.06 1.53 28.17 16 6 O -0.64 -31.66 16.01 -4.00 -0.06 -31.73 16 7 N -0.72 -29.01 5.55 -482.31 -2.68 -31.69 16 8 C 0.29 15.35 5.43 85.64 0.46 15.82 16 9 C -0.55 -29.28 9.28 25.60 0.24 -29.04 16 10 H 0.09 4.01 7.60 -2.91 -0.02 3.98 16 11 C 0.00 0.19 5.46 84.66 0.46 0.65 16 12 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 13 Si 0.98 41.24 29.54 68.60 2.03 43.26 16 14 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 15 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 17 C -0.09 -1.29 4.95 -19.86 -0.10 -1.39 16 18 C -0.05 -0.40 9.05 22.27 0.20 -0.20 16 19 C -0.09 -0.51 10.05 22.27 0.22 -0.29 16 20 C -0.05 -0.56 9.56 22.27 0.21 -0.35 16 21 C -0.06 -1.08 6.85 36.37 0.25 -0.83 16 22 N 0.03 0.73 4.45 -46.46 -0.21 0.52 16 23 O -0.16 -3.87 18.45 18.89 0.35 -3.52 16 24 O -0.20 -5.69 18.45 18.88 0.35 -5.34 16 25 C -0.05 -0.97 9.18 22.27 0.20 -0.76 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.41 6.47 6.89 -92.71 -0.64 5.83 16 30 H 0.41 12.92 8.34 -92.71 -0.77 12.15 16 31 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.17 0.47 6.93 -2.91 -0.02 0.45 16 35 H 0.19 -0.43 8.06 -2.91 -0.02 -0.46 16 36 H 0.17 1.27 7.61 -2.91 -0.02 1.25 16 37 H 0.15 2.85 7.59 -2.91 -0.02 2.83 16 Total: -1.00 -78.23 332.12 1.94 -76.29 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -0.29 Total: 13.45 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 4.49 Total: 13.94 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -4.92 Total: -106.36 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: 0.63 Total: -40.59 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -78.23 1.94 -76.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426427779.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.897 kcal (2) G-P(sol) polarization free energy of solvation -78.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds