Wall clock time and date at job start Tue Mar 31 2020 08:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47110 * 2 1 4 4 C 1.52997 * 109.47085 * 239.99940 * 2 1 3 5 5 C 1.50706 * 109.47238 * 64.99687 * 4 2 1 6 6 O 1.21279 * 119.99507 * 0.02562 * 5 4 2 7 7 C 1.46974 * 120.00117 * 180.02562 * 5 4 2 8 8 C 1.39955 * 120.19464 * 359.97438 * 7 5 4 9 9 C 1.37771 * 119.84570 * 179.97438 * 8 7 5 10 10 C 1.38522 * 120.25378 * 0.02562 * 9 8 7 11 11 C 1.38224 * 120.40078 * 359.97438 * 10 9 8 12 12 C 1.38282 * 120.14246 * 359.73792 * 11 10 9 13 13 F 1.35094 * 120.12552 * 180.28256 * 12 11 10 14 14 C 1.50701 * 109.47421 * 119.99915 * 2 1 3 15 15 O 1.21280 * 119.99974 * 119.99803 * 14 2 1 16 16 N 1.34771 * 119.99782 * 300.00093 * 14 2 1 17 17 C 1.46503 * 120.00040 * 179.97438 * 16 14 2 18 18 C 1.50703 * 109.47283 * 179.97438 * 17 16 14 19 19 H 1.07991 * 119.99848 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99702 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00472 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99677 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47381 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47389 * 120.00040 * 22 20 18 25 25 H 1.48504 * 109.47044 * 239.99873 * 22 20 18 26 26 H 1.08993 * 109.46967 * 59.99924 * 1 2 3 27 27 H 1.08997 * 109.46762 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46776 * 299.99721 * 1 2 3 29 29 H 1.09001 * 109.46832 * 305.00000 * 4 2 1 30 30 H 1.09000 * 109.47611 * 185.00297 * 4 2 1 31 31 H 1.07997 * 120.07725 * 0.02562 * 8 7 5 32 32 H 1.07998 * 119.87017 * 180.02562 * 9 8 7 33 33 H 1.07995 * 119.79533 * 179.97438 * 10 9 8 34 34 H 1.07992 * 119.93002 * 180.02562 * 11 10 9 35 35 H 0.97002 * 120.00454 * 359.97438 * 16 14 2 36 36 H 1.09002 * 109.46913 * 300.00063 * 17 16 14 37 37 H 1.08993 * 109.46947 * 59.99784 * 17 16 14 38 38 H 0.96996 * 120.00094 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0116 1.0873 -2.3632 7 6 2.0154 -0.4326 -3.8110 8 6 2.7425 -1.6208 -3.9464 9 6 3.0889 -2.0734 -5.2007 10 6 2.7209 -1.3568 -6.3276 11 6 2.0028 -0.1820 -6.2058 12 6 1.6412 0.2843 -4.9552 13 9 0.9345 1.4296 -4.8369 14 6 2.0325 -0.7104 1.2305 15 8 2.7297 -1.6965 1.1192 16 7 1.7069 -0.2499 2.4545 17 6 2.1948 -0.9408 3.6507 18 6 1.6931 -0.2299 4.8812 19 1 1.0725 0.6483 4.7821 20 6 2.0255 -0.7015 6.1334 21 7 2.7808 -1.7713 6.2542 22 14 1.4031 0.1792 7.6586 23 1 0.5784 1.3463 7.2545 24 1 0.5772 -0.7537 8.4666 25 1 2.5582 0.6449 8.4674 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6054 -1.7198 -1.2951 30 1 3.1263 -0.7996 -1.2056 31 1 3.0305 -2.1820 -3.0698 32 1 3.6496 -2.9905 -5.3057 33 1 2.9968 -1.7182 -7.3071 34 1 1.7195 0.3704 -7.0894 35 1 1.1495 0.5390 2.5436 36 1 1.8311 -1.9683 3.6506 37 1 3.2847 -0.9412 3.6508 38 1 3.0150 -2.1028 7.1351 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427630069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:28 Heat of formation + Delta-G solvation = -108.645219 kcal Electronic energy + Delta-G solvation = -22361.117052 eV Core-core repulsion = 18696.645003 eV Total energy + Delta-G solvation = -3664.472049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.15199 -40.31782 -39.04761 -38.30750 -34.27726 -33.93135 -32.37551 -32.01442 -30.87065 -28.27561 -27.07344 -24.65640 -23.76794 -22.87556 -21.85580 -20.04264 -19.20023 -18.11772 -17.33962 -16.72827 -16.48534 -16.05385 -15.77139 -15.37788 -15.16512 -14.94003 -14.63936 -14.43703 -14.23896 -14.05697 -13.43943 -13.22872 -12.78273 -12.65732 -12.56843 -12.33723 -11.98340 -11.83796 -11.73167 -11.64145 -11.07778 -10.99139 -10.90287 -10.84418 -10.30752 -9.77538 -9.54632 -9.37485 -9.15228 -8.96091 -8.73774 -7.87688 -6.16851 -4.23380 0.20867 0.77121 2.13640 3.23806 3.25926 3.31052 3.34324 3.37089 3.56488 3.85257 4.19191 4.26561 4.40654 4.48888 4.70341 4.72406 4.84211 5.06648 5.10266 5.19592 5.35535 5.39242 5.58391 5.63877 5.68978 5.73975 5.75570 5.80406 5.90544 6.04852 6.18952 6.36450 6.38966 7.29892 7.36926 7.44170 7.51606 7.67174 7.97143 8.63445 8.77824 9.09584 9.43376 10.93445 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.037893 B = 0.002699 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.741746 B =10372.570546 C =10989.317787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 H 0.098 0.902 4 C -0.142 4.142 5 C 0.393 3.607 6 O -0.437 6.437 7 C -0.203 4.203 8 C -0.042 4.042 9 C -0.145 4.145 10 C -0.062 4.062 11 C -0.173 4.173 12 C 0.154 3.846 13 F -0.118 7.118 14 C 0.503 3.497 15 O -0.561 6.561 16 N -0.709 5.709 17 C 0.249 3.751 18 C -0.542 4.542 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.147 0.853 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.391 0.609 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.299 1.185 -25.181 25.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 H 0.116 0.884 4 C -0.180 4.180 5 C 0.270 3.730 6 O -0.311 6.311 7 C -0.205 4.205 8 C -0.061 4.061 9 C -0.163 4.163 10 C -0.080 4.080 11 C -0.191 4.191 12 C 0.134 3.866 13 F -0.096 7.096 14 C 0.288 3.712 15 O -0.441 6.441 16 N -0.357 5.357 17 C 0.128 3.872 18 C -0.580 4.580 19 H 0.082 0.918 20 C -0.141 4.141 21 N -0.524 5.524 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.224 0.776 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.081 0.952 -24.996 25.038 hybrid contribution -0.569 0.883 0.915 1.393 sum -1.649 1.836 -24.081 24.207 Atomic orbital electron populations 1.21880 0.92875 1.02409 1.03428 1.21104 0.97955 1.00845 0.92536 0.88389 1.21804 1.04217 1.00592 0.91363 1.22428 0.76420 0.84919 0.89217 1.90553 1.29892 1.21937 1.88753 1.20763 1.06291 0.99007 0.94447 1.21541 0.92693 0.92914 0.98920 1.21252 1.01788 1.01194 0.92047 1.21279 0.94229 0.92916 0.99562 1.21177 1.02837 0.99012 0.96107 1.17996 0.92060 0.82964 0.93593 1.91588 1.74993 1.46234 1.96789 1.20359 0.80956 0.84936 0.84964 1.90635 1.39326 1.27030 1.87083 1.46455 1.51533 1.31142 1.06549 1.19115 0.95294 0.92868 0.79922 1.21274 1.33090 1.13089 0.90582 0.91839 1.24953 0.94854 0.94986 0.99258 1.69981 1.35833 1.22482 1.24069 0.86364 0.78634 0.79524 0.82418 1.19611 1.20798 1.20791 0.90676 0.92512 0.91798 0.87499 0.87281 0.83493 0.84508 0.84564 0.84216 0.77572 0.95522 0.95538 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.83 37.16 0.33 -1.71 16 2 C -0.10 -1.53 2.37 -91.77 -0.22 -1.75 16 3 H 0.10 1.41 7.95 -51.93 -0.41 1.00 16 4 C -0.14 -1.80 3.13 -27.88 -0.09 -1.88 16 5 C 0.39 4.94 6.83 -30.77 -0.21 4.73 16 6 O -0.44 -6.60 12.96 5.56 0.07 -6.53 16 7 C -0.20 -2.17 5.87 -105.01 -0.62 -2.79 16 8 C -0.04 -0.34 9.47 -39.11 -0.37 -0.72 16 9 C -0.14 -0.91 10.02 -39.65 -0.40 -1.31 16 10 C -0.06 -0.37 10.03 -39.48 -0.40 -0.76 16 11 C -0.17 -1.32 10.01 -39.57 -0.40 -1.72 16 12 C 0.15 1.65 7.29 -38.86 -0.28 1.37 16 13 F -0.12 -1.53 15.55 2.25 0.04 -1.50 16 14 C 0.50 9.90 7.15 -10.99 -0.08 9.82 16 15 O -0.56 -12.87 15.92 5.56 0.09 -12.78 16 16 N -0.71 -15.05 5.44 -61.47 -0.33 -15.38 16 17 C 0.25 6.60 5.43 -5.19 -0.03 6.57 16 18 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 19 H 0.06 1.63 7.60 -52.49 -0.40 1.24 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 22 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.07 1.01 5.95 -51.93 -0.31 0.70 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.85 7.57 -51.93 -0.39 0.46 16 29 H 0.11 1.26 8.09 -51.93 -0.42 0.84 16 30 H 0.11 1.33 7.90 -51.93 -0.41 0.92 16 31 H 0.15 1.01 7.05 -52.49 -0.37 0.64 16 32 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 33 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.39 7.30 7.74 -40.82 -0.32 6.98 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 331.96 15.07 5.00 5.00 Total: -1.00 -33.57 331.96 -7.29 -40.87 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -4.70 Total: 3.35 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -3.17 Total: -3.60 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.40 Total: -40.77 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.16 Total: -19.31 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.57 -7.29 -40.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427630069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.780 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds