Wall clock time and date at job start Tue Mar 31 2020 08:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47110 * 2 1 4 4 C 1.52997 * 109.47085 * 239.99940 * 2 1 3 5 5 C 1.50706 * 109.47238 * 64.99687 * 4 2 1 6 6 O 1.21279 * 119.99507 * 0.02562 * 5 4 2 7 7 C 1.46974 * 120.00117 * 180.02562 * 5 4 2 8 8 C 1.39955 * 120.19464 * 359.97438 * 7 5 4 9 9 C 1.37771 * 119.84570 * 179.97438 * 8 7 5 10 10 C 1.38522 * 120.25378 * 0.02562 * 9 8 7 11 11 C 1.38224 * 120.40078 * 359.97438 * 10 9 8 12 12 C 1.38282 * 120.14246 * 359.73792 * 11 10 9 13 13 F 1.35094 * 120.12552 * 180.28256 * 12 11 10 14 14 C 1.50701 * 109.47421 * 119.99915 * 2 1 3 15 15 O 1.21280 * 119.99974 * 119.99803 * 14 2 1 16 16 N 1.34771 * 119.99782 * 300.00093 * 14 2 1 17 17 C 1.46503 * 120.00040 * 179.97438 * 16 14 2 18 18 C 1.50703 * 109.47283 * 179.97438 * 17 16 14 19 19 H 1.07991 * 119.99848 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99702 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00472 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99677 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47381 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47389 * 120.00040 * 22 20 18 25 25 H 1.48504 * 109.47044 * 239.99873 * 22 20 18 26 26 H 1.08993 * 109.46967 * 59.99924 * 1 2 3 27 27 H 1.08997 * 109.46762 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46776 * 299.99721 * 1 2 3 29 29 H 1.09001 * 109.46832 * 305.00000 * 4 2 1 30 30 H 1.09000 * 109.47611 * 185.00297 * 4 2 1 31 31 H 1.07997 * 120.07725 * 0.02562 * 8 7 5 32 32 H 1.07998 * 119.87017 * 180.02562 * 9 8 7 33 33 H 1.07995 * 119.79533 * 179.97438 * 10 9 8 34 34 H 1.07992 * 119.93002 * 180.02562 * 11 10 9 35 35 H 0.97002 * 120.00454 * 359.97438 * 16 14 2 36 36 H 1.09002 * 109.46913 * 300.00063 * 17 16 14 37 37 H 1.08993 * 109.46947 * 59.99784 * 17 16 14 38 38 H 0.96996 * 120.00094 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0116 1.0873 -2.3632 7 6 2.0154 -0.4326 -3.8110 8 6 2.7425 -1.6208 -3.9464 9 6 3.0889 -2.0734 -5.2007 10 6 2.7209 -1.3568 -6.3276 11 6 2.0028 -0.1820 -6.2058 12 6 1.6412 0.2843 -4.9552 13 9 0.9345 1.4296 -4.8369 14 6 2.0325 -0.7104 1.2305 15 8 2.7297 -1.6965 1.1192 16 7 1.7069 -0.2499 2.4545 17 6 2.1948 -0.9408 3.6507 18 6 1.6931 -0.2299 4.8812 19 1 1.0725 0.6483 4.7821 20 6 2.0255 -0.7015 6.1334 21 7 2.7808 -1.7713 6.2542 22 14 1.4031 0.1792 7.6586 23 1 0.5784 1.3463 7.2545 24 1 0.5772 -0.7537 8.4666 25 1 2.5582 0.6449 8.4674 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6054 -1.7198 -1.2951 30 1 3.1263 -0.7996 -1.2056 31 1 3.0305 -2.1820 -3.0698 32 1 3.6496 -2.9905 -5.3057 33 1 2.9968 -1.7182 -7.3071 34 1 1.7195 0.3704 -7.0894 35 1 1.1495 0.5390 2.5436 36 1 1.8311 -1.9683 3.6506 37 1 3.2847 -0.9412 3.6508 38 1 3.0150 -2.1028 7.1351 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427630069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:28 Heat of formation + Delta-G solvation = -130.126351 kcal Electronic energy + Delta-G solvation = -22362.048544 eV Core-core repulsion = 18696.645003 eV Total energy + Delta-G solvation = -3665.403541 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.98086 -41.38876 -40.37187 -39.20594 -36.19258 -35.27335 -34.28776 -32.82478 -31.47481 -29.69231 -28.71464 -25.83004 -25.01164 -23.94025 -23.14191 -21.29305 -20.54237 -19.15374 -18.58252 -17.93455 -17.49062 -17.08576 -17.03037 -16.90126 -16.51579 -16.16405 -15.78468 -15.63036 -15.53194 -15.00829 -14.56437 -14.45084 -14.13820 -13.98807 -13.89182 -13.52620 -13.32187 -12.98277 -12.89770 -12.87670 -12.75861 -12.32396 -12.23178 -12.18709 -12.07447 -11.46313 -10.84861 -10.82027 -10.56822 -10.15817 -9.82718 -9.79723 -8.30136 -6.46087 -0.50320 0.17614 1.31047 1.42635 1.43223 1.56857 1.73479 2.27844 2.46002 2.62918 2.96829 3.04798 3.17151 3.52686 3.69490 3.92424 3.98417 4.00873 4.14478 4.28058 4.30934 4.42973 4.63194 4.69689 4.79146 4.91645 5.00506 5.03869 5.04472 5.11981 5.21947 5.24514 5.25765 5.37158 5.48353 5.67704 5.81918 5.84743 6.41475 6.64735 6.87894 7.22480 7.44706 8.82177 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.037893 B = 0.002699 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.741746 B =10372.570546 C =10989.317787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.106 0.894 4 C -0.139 4.139 5 C 0.400 3.600 6 O -0.471 6.471 7 C -0.226 4.226 8 C -0.046 4.046 9 C -0.138 4.138 10 C -0.048 4.048 11 C -0.172 4.172 12 C 0.123 3.877 13 F -0.140 7.140 14 C 0.504 3.496 15 O -0.594 6.594 16 N -0.707 5.707 17 C 0.266 3.734 18 C -0.556 4.556 19 H 0.080 0.920 20 C 0.005 3.995 21 N -0.929 5.929 22 Si 0.983 3.017 23 H -0.256 1.256 24 H -0.278 1.278 25 H -0.278 1.278 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.156 0.844 32 H 0.168 0.832 33 H 0.175 0.825 34 H 0.158 0.842 35 H 0.406 0.594 36 H -0.009 1.009 37 H -0.010 1.010 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.594 1.377 -26.648 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.124 0.876 4 C -0.176 4.176 5 C 0.280 3.720 6 O -0.348 6.348 7 C -0.228 4.228 8 C -0.064 4.064 9 C -0.156 4.156 10 C -0.066 4.066 11 C -0.191 4.191 12 C 0.103 3.897 13 F -0.118 7.118 14 C 0.291 3.709 15 O -0.476 6.476 16 N -0.356 5.356 17 C 0.143 3.857 18 C -0.594 4.594 19 H 0.098 0.902 20 C -0.195 4.195 21 N -0.568 5.568 22 Si 0.806 3.194 23 H -0.179 1.179 24 H -0.203 1.203 25 H -0.204 1.204 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.174 0.826 32 H 0.185 0.815 33 H 0.192 0.808 34 H 0.176 0.824 35 H 0.241 0.759 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.390 1.162 -26.500 26.562 hybrid contribution -0.396 0.717 1.241 1.487 sum -1.787 1.878 -25.260 25.392 Atomic orbital electron populations 1.21851 0.91657 1.02647 1.03902 1.21048 0.98791 1.00697 0.90712 0.87556 1.21799 1.04482 1.00825 0.90540 1.22502 0.75395 0.84120 0.89999 1.90538 1.31732 1.23296 1.89204 1.20673 1.08325 1.00520 0.93288 1.21746 0.92208 0.92042 1.00445 1.21673 1.00813 1.01925 0.91209 1.21764 0.92089 0.91500 1.01219 1.21485 1.02458 0.99709 0.95415 1.18413 0.93336 0.82957 0.94987 1.91525 1.75794 1.47533 1.96986 1.21182 0.79756 0.84373 0.85611 1.90613 1.40681 1.28685 1.87608 1.46233 1.52037 1.31525 1.05805 1.18569 0.93006 0.91767 0.82350 1.21641 1.33257 1.13593 0.90904 0.90154 1.26026 0.94765 0.95638 1.03041 1.70127 1.37186 1.24274 1.25196 0.85140 0.78146 0.78537 0.77577 1.17937 1.20332 1.20363 0.90132 0.92401 0.91357 0.86606 0.86874 0.82639 0.81470 0.80795 0.82400 0.75859 0.99102 0.99198 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 8.83 71.98 0.64 -3.20 16 2 C -0.09 -2.70 2.37 -11.54 -0.03 -2.72 16 3 H 0.11 3.02 7.95 -2.39 -0.02 3.00 16 4 C -0.14 -3.48 3.13 29.85 0.09 -3.39 16 5 C 0.40 10.08 6.83 27.98 0.19 10.27 16 6 O -0.47 -14.45 12.96 -3.02 -0.04 -14.49 16 7 C -0.23 -4.73 5.87 -20.12 -0.12 -4.85 16 8 C -0.05 -0.67 9.47 22.58 0.21 -0.46 16 9 C -0.14 -1.27 10.02 22.23 0.22 -1.05 16 10 C -0.05 -0.39 10.03 22.33 0.22 -0.16 16 11 C -0.17 -2.28 10.01 22.28 0.22 -2.06 16 12 C 0.12 2.59 7.29 22.74 0.17 2.76 16 13 F -0.14 -3.74 15.55 44.97 0.70 -3.04 16 14 C 0.50 20.11 7.15 87.66 0.63 20.73 16 15 O -0.59 -27.99 15.92 -3.03 -0.05 -28.03 16 16 N -0.71 -30.51 5.44 -466.79 -2.54 -33.05 16 17 C 0.27 14.64 5.43 85.63 0.46 15.11 16 18 C -0.56 -30.57 9.28 25.60 0.24 -30.34 16 19 H 0.08 4.05 7.60 -2.92 -0.02 4.03 16 20 C 0.00 0.28 5.46 84.66 0.46 0.74 16 21 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 22 Si 0.98 42.72 29.54 68.60 2.03 44.74 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 26 H 0.08 2.14 5.95 -2.39 -0.01 2.12 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.75 7.57 -2.39 -0.02 1.73 16 29 H 0.12 2.68 8.09 -2.39 -0.02 2.67 16 30 H 0.11 2.75 7.90 -2.39 -0.02 2.73 16 31 H 0.16 1.89 7.05 -2.91 -0.02 1.87 16 32 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.17 0.12 8.06 -2.91 -0.02 0.10 16 34 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.41 15.04 7.74 -92.71 -0.72 14.32 16 36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -75.40 331.96 4.37 -71.03 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.37 Total: 17.14 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 3.62 Total: 1.38 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -2.25 Total: -88.74 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -0.09 Total: -42.52 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.70 Total: -3.04 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -75.40 4.37 -71.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427630069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.096 kcal (2) G-P(sol) polarization free energy of solvation -75.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds