Wall clock time and date at job start Tue Mar 31 2020 08:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47102 * 120.00237 * 2 1 3 5 5 C 1.50699 * 109.46866 * 295.00087 * 4 2 1 6 6 O 1.21282 * 120.00040 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00033 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00165 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47324 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99822 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00355 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99771 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47174 * 89.99890 * 13 11 9 15 15 H 1.48501 * 109.47062 * 209.99841 * 13 11 9 16 16 H 1.48499 * 109.46981 * 329.99994 * 13 11 9 17 17 C 1.50698 * 109.47395 * 240.00137 * 2 1 3 18 18 O 1.21258 * 119.99809 * 269.99929 * 17 2 1 19 19 C 1.47170 * 120.00214 * 90.00038 * 17 2 1 20 20 C 1.39868 * 120.16296 * 180.02562 * 19 17 2 21 21 C 1.37877 * 119.88107 * 179.97438 * 20 19 17 22 22 C 1.38386 * 120.19541 * 359.97438 * 21 20 19 23 23 C 1.38595 * 120.32735 * 0.02562 * 22 21 20 24 24 F 1.35101 * 119.93913 * 179.97438 * 23 22 21 25 25 C 1.38136 * 120.12096 * 359.73777 * 23 22 21 26 26 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 27 27 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 29 29 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 30 30 H 1.09000 * 109.47050 * 175.00134 * 4 2 1 31 31 H 0.96996 * 119.99850 * 359.97438 * 7 5 4 32 32 H 1.08996 * 109.47197 * 300.00087 * 8 7 5 33 33 H 1.09004 * 109.46923 * 59.99390 * 8 7 5 34 34 H 0.96991 * 119.99886 * 180.02562 * 12 11 9 35 35 H 1.08005 * 120.06061 * 359.97438 * 20 19 17 36 36 H 1.07999 * 119.90099 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.83141 * 180.02562 * 22 21 20 38 38 H 1.07996 * 120.10560 * 180.26000 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0569 2.4766 6 8 1.0116 1.0873 2.3633 7 7 1.9852 -0.3915 3.7002 8 6 1.5981 0.3654 4.8933 9 6 2.1003 -0.3451 6.1237 10 1 2.6522 -1.2683 6.0267 11 6 1.8552 0.1835 7.3733 12 7 2.2930 -0.4368 8.4472 13 14 0.8999 1.7800 7.5411 14 1 -0.5498 1.4796 7.6569 15 1 1.3540 2.5032 8.7560 16 1 1.1360 2.6262 6.3439 17 6 2.0324 -0.7104 -1.2304 18 8 2.2345 -1.9056 -1.2004 19 6 2.2777 0.0465 -2.4685 20 6 2.7435 -0.6095 -3.6127 21 6 2.9709 0.1052 -4.7696 22 6 2.7391 1.4692 -4.8020 23 6 2.2776 2.1276 -3.6732 24 9 2.0544 3.4595 -3.7135 25 6 2.0406 1.4238 -2.5084 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6054 -1.7198 1.2951 30 1 3.1263 -0.7995 1.2056 31 1 2.4891 -1.2153 3.7908 32 1 2.0327 1.3639 4.8470 33 1 0.5118 0.4437 4.9372 34 1 2.1202 -0.0651 9.3262 35 1 2.9247 -1.6740 -3.5899 36 1 3.3309 -0.4009 -5.6531 37 1 2.9188 2.0232 -5.7116 38 1 1.6770 1.9365 -1.6302 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427632455.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:46 Heat of formation + Delta-G solvation = -105.270536 kcal Electronic energy + Delta-G solvation = -22265.069297 eV Core-core repulsion = 18600.743586 eV Total energy + Delta-G solvation = -3664.325712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.25901 -40.61004 -39.12546 -38.30649 -34.76145 -33.97910 -32.39043 -31.84463 -30.88550 -28.91374 -26.95393 -25.61178 -23.57661 -22.68528 -21.75025 -20.08287 -19.44241 -18.23676 -17.22769 -16.78915 -16.58431 -16.16658 -15.99554 -15.64578 -15.34910 -15.21064 -14.78403 -14.56174 -14.40149 -13.95817 -13.49730 -13.48163 -12.89058 -12.72617 -12.58457 -12.43696 -12.28569 -12.25676 -11.92624 -11.68277 -11.24990 -11.04334 -10.96947 -10.77558 -9.98889 -9.88743 -9.59773 -9.51027 -9.21382 -9.18322 -8.79276 -8.17387 -6.22638 -4.25113 0.13181 0.71704 2.00379 3.17596 3.21505 3.25777 3.32118 3.39986 3.45210 3.79369 4.10745 4.24418 4.32074 4.44950 4.59622 4.64853 4.79746 4.93261 4.99259 5.12543 5.25169 5.32763 5.49105 5.51533 5.56856 5.64018 5.69361 5.72410 5.83864 5.90135 6.03452 6.33760 6.34602 6.78093 7.04890 7.19753 7.21191 7.37547 8.10877 8.49378 8.73418 8.89452 9.37227 10.89367 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.027417 B = 0.002885 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.014122 B = 9702.646546 C =10346.699818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 H 0.105 0.895 4 C -0.131 4.131 5 C 0.502 3.498 6 O -0.558 6.558 7 N -0.704 5.704 8 C 0.220 3.780 9 C -0.545 4.545 10 H 0.080 0.920 11 C 0.077 3.923 12 N -0.892 5.892 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.261 1.261 17 C 0.404 3.596 18 O -0.443 6.443 19 C -0.136 4.136 20 C -0.074 4.074 21 C -0.104 4.104 22 C -0.126 4.126 23 C 0.088 3.912 24 F -0.135 7.135 25 C -0.107 4.107 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.398 0.602 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.268 0.732 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 1.308 -27.066 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 H 0.123 0.877 4 C -0.172 4.172 5 C 0.287 3.713 6 O -0.438 6.438 7 N -0.352 5.352 8 C 0.098 3.902 9 C -0.582 4.582 10 H 0.098 0.902 11 C -0.127 4.127 12 N -0.529 5.529 13 Si 0.704 3.296 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.185 1.185 17 C 0.281 3.719 18 O -0.317 6.317 19 C -0.138 4.138 20 C -0.092 4.092 21 C -0.122 4.122 22 C -0.145 4.145 23 C 0.069 3.931 24 F -0.114 7.114 25 C -0.125 4.125 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.231 0.769 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.270 1.462 -26.872 26.913 hybrid contribution -0.181 0.730 0.276 0.801 sum 0.089 2.193 -26.596 26.686 Atomic orbital electron populations 1.21866 0.91489 1.02649 1.04301 1.21351 0.98996 1.01402 0.91847 0.87696 1.21565 1.02910 1.00659 0.92020 1.20389 0.80129 0.85832 0.84909 1.90606 1.41300 1.25048 1.86850 1.46207 1.55510 1.27399 1.06107 1.19496 0.95628 0.92507 0.82583 1.21101 1.37529 1.10555 0.89056 0.90242 1.24807 0.95060 0.97339 0.95459 1.69879 1.45434 1.39457 0.98172 0.86807 0.80629 0.83862 0.78321 1.19852 1.20911 1.18507 1.22561 0.72885 0.88279 0.88216 1.90522 1.39330 1.16489 1.85339 1.20419 1.03382 0.93691 0.96262 1.21535 0.95153 1.01117 0.91415 1.21027 0.99524 0.93079 0.98569 1.21440 0.99577 0.95601 0.97864 1.17589 1.02365 0.77995 0.95177 1.91543 1.92452 1.30369 1.97016 1.21620 0.99018 0.93872 0.98029 0.92504 0.92499 0.88623 0.88149 0.88968 0.76874 0.95681 0.96131 0.92246 0.84089 0.84263 0.84252 0.83166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.92 37.16 0.33 -1.42 16 2 C -0.12 -1.40 1.80 -91.77 -0.17 -1.57 16 3 H 0.11 1.23 6.29 -51.93 -0.33 0.90 16 4 C -0.13 -1.76 4.68 -27.88 -0.13 -1.89 16 5 C 0.50 9.00 7.55 -10.99 -0.08 8.92 16 6 O -0.56 -11.52 13.97 5.56 0.08 -11.45 16 7 N -0.70 -13.94 5.55 -61.47 -0.34 -14.28 16 8 C 0.22 5.33 4.50 -5.20 -0.02 5.31 16 9 C -0.54 -14.86 9.83 -34.44 -0.34 -15.20 16 10 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 11 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 12 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 13 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 17 C 0.40 4.59 6.17 -30.68 -0.19 4.40 16 18 O -0.44 -5.92 16.27 5.58 0.09 -5.83 16 19 C -0.14 -1.33 5.87 -105.07 -0.62 -1.94 16 20 C -0.07 -0.61 9.60 -39.10 -0.38 -0.98 16 21 C -0.10 -0.66 10.03 -39.66 -0.40 -1.06 16 22 C -0.13 -0.87 10.02 -39.40 -0.39 -1.27 16 23 C 0.09 0.78 7.29 -39.49 -0.29 0.50 16 24 F -0.14 -1.35 17.26 2.25 0.04 -1.31 16 25 C -0.11 -0.99 9.34 -39.03 -0.36 -1.35 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.10 1.39 5.95 -51.93 -0.31 1.08 16 29 H 0.10 1.27 8.02 -51.93 -0.42 0.86 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.40 7.01 8.32 -40.82 -0.34 6.67 16 32 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 33 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.14 1.08 7.65 -52.48 -0.40 0.68 16 36 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.15 1.31 6.36 -52.49 -0.33 0.98 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -32.16 330.34 -6.77 -38.93 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.59 Total: 3.49 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -3.13 Total: -5.48 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.43 Total: -39.96 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.17 Total: -17.28 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.16 -6.77 -38.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427632455.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.338 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds