Wall clock time and date at job start Tue Mar 31 2020 08:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47102 * 120.00237 * 2 1 3 5 5 C 1.50699 * 109.46866 * 295.00087 * 4 2 1 6 6 O 1.21282 * 120.00040 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00033 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00165 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47324 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99822 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00355 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99771 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47174 * 89.99890 * 13 11 9 15 15 H 1.48501 * 109.47062 * 209.99841 * 13 11 9 16 16 H 1.48499 * 109.46981 * 329.99994 * 13 11 9 17 17 C 1.50698 * 109.47395 * 240.00137 * 2 1 3 18 18 O 1.21258 * 119.99809 * 269.99929 * 17 2 1 19 19 C 1.47170 * 120.00214 * 90.00038 * 17 2 1 20 20 C 1.39868 * 120.16296 * 180.02562 * 19 17 2 21 21 C 1.37877 * 119.88107 * 179.97438 * 20 19 17 22 22 C 1.38386 * 120.19541 * 359.97438 * 21 20 19 23 23 C 1.38595 * 120.32735 * 0.02562 * 22 21 20 24 24 F 1.35101 * 119.93913 * 179.97438 * 23 22 21 25 25 C 1.38136 * 120.12096 * 359.73777 * 23 22 21 26 26 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 27 27 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 29 29 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 30 30 H 1.09000 * 109.47050 * 175.00134 * 4 2 1 31 31 H 0.96996 * 119.99850 * 359.97438 * 7 5 4 32 32 H 1.08996 * 109.47197 * 300.00087 * 8 7 5 33 33 H 1.09004 * 109.46923 * 59.99390 * 8 7 5 34 34 H 0.96991 * 119.99886 * 180.02562 * 12 11 9 35 35 H 1.08005 * 120.06061 * 359.97438 * 20 19 17 36 36 H 1.07999 * 119.90099 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.83141 * 180.02562 * 22 21 20 38 38 H 1.07996 * 120.10560 * 180.26000 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0569 2.4766 6 8 1.0116 1.0873 2.3633 7 7 1.9852 -0.3915 3.7002 8 6 1.5981 0.3654 4.8933 9 6 2.1003 -0.3451 6.1237 10 1 2.6522 -1.2683 6.0267 11 6 1.8552 0.1835 7.3733 12 7 2.2930 -0.4368 8.4472 13 14 0.8999 1.7800 7.5411 14 1 -0.5498 1.4796 7.6569 15 1 1.3540 2.5032 8.7560 16 1 1.1360 2.6262 6.3439 17 6 2.0324 -0.7104 -1.2304 18 8 2.2345 -1.9056 -1.2004 19 6 2.2777 0.0465 -2.4685 20 6 2.7435 -0.6095 -3.6127 21 6 2.9709 0.1052 -4.7696 22 6 2.7391 1.4692 -4.8020 23 6 2.2776 2.1276 -3.6732 24 9 2.0544 3.4595 -3.7135 25 6 2.0406 1.4238 -2.5084 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6054 -1.7198 1.2951 30 1 3.1263 -0.7995 1.2056 31 1 2.4891 -1.2153 3.7908 32 1 2.0327 1.3639 4.8470 33 1 0.5118 0.4437 4.9372 34 1 2.1202 -0.0651 9.3262 35 1 2.9247 -1.6740 -3.5899 36 1 3.3309 -0.4009 -5.6531 37 1 2.9188 2.0232 -5.7116 38 1 1.6770 1.9365 -1.6302 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427632455.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:45 Heat of formation + Delta-G solvation = -125.521285 kcal Electronic energy + Delta-G solvation = -22265.947436 eV Core-core repulsion = 18600.743586 eV Total energy + Delta-G solvation = -3665.203850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.95161 -41.53673 -40.44070 -39.11273 -36.33663 -35.26633 -34.41078 -32.54932 -31.50395 -30.55033 -28.42107 -26.45052 -24.54439 -23.89169 -22.99344 -21.50018 -20.44342 -19.32393 -18.74749 -17.81304 -17.35745 -17.23991 -16.96246 -16.76758 -16.65374 -16.34955 -15.92623 -15.84306 -15.54068 -15.10364 -14.68305 -14.62569 -14.29012 -14.08190 -13.94794 -13.67019 -13.21347 -13.09179 -12.96741 -12.84405 -12.65164 -12.53676 -12.19919 -12.01697 -11.92645 -11.66141 -10.94456 -10.91670 -10.58256 -10.20321 -9.90110 -9.84826 -8.40125 -6.47432 -0.55388 0.10898 1.22928 1.33146 1.35199 1.47573 1.72159 2.27748 2.34099 2.57764 2.87876 2.95305 3.19666 3.52603 3.66725 3.88503 3.94941 4.01446 4.05500 4.21179 4.26600 4.45484 4.60075 4.64835 4.67459 4.78043 4.87331 4.89176 5.00431 5.03955 5.07310 5.15328 5.25488 5.27769 5.31577 5.55251 5.75513 6.08234 6.34066 6.54018 6.83941 7.15145 7.40035 8.74791 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.027417 B = 0.002885 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.014122 B = 9702.646546 C =10346.699818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 H 0.107 0.893 4 C -0.121 4.121 5 C 0.504 3.496 6 O -0.583 6.583 7 N -0.708 5.708 8 C 0.232 3.768 9 C -0.548 4.548 10 H 0.057 0.943 11 C 0.024 3.976 12 N -0.933 5.933 13 Si 0.940 3.060 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.258 1.258 17 C 0.415 3.585 18 O -0.466 6.466 19 C -0.153 4.153 20 C -0.076 4.076 21 C -0.094 4.094 22 C -0.115 4.115 23 C 0.069 3.931 24 F -0.145 7.145 25 C -0.112 4.112 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.408 0.592 32 H 0.015 0.985 33 H 0.013 0.987 34 H 0.272 0.728 35 H 0.146 0.854 36 H 0.174 0.826 37 H 0.165 0.835 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.678 1.734 -29.675 29.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 H 0.125 0.875 4 C -0.161 4.161 5 C 0.291 3.709 6 O -0.465 6.465 7 N -0.358 5.358 8 C 0.108 3.892 9 C -0.586 4.586 10 H 0.075 0.925 11 C -0.176 4.176 12 N -0.572 5.572 13 Si 0.763 3.237 14 H -0.190 1.190 15 H -0.199 1.199 16 H -0.182 1.182 17 C 0.294 3.706 18 O -0.342 6.342 19 C -0.154 4.154 20 C -0.094 4.094 21 C -0.112 4.112 22 C -0.134 4.134 23 C 0.050 3.950 24 F -0.124 7.124 25 C -0.131 4.131 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.243 0.757 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.081 0.919 35 H 0.164 0.836 36 H 0.191 0.809 37 H 0.183 0.817 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.343 1.879 -29.507 29.569 hybrid contribution -0.163 0.561 0.995 1.153 sum 0.180 2.440 -28.512 28.617 Atomic orbital electron populations 1.21788 0.91533 1.02706 1.03887 1.21363 0.99035 1.01529 0.91754 0.87492 1.21542 1.04134 1.00371 0.90061 1.21100 0.78909 0.85569 0.85280 1.90599 1.42231 1.26415 1.87237 1.46091 1.56282 1.27722 1.05692 1.19095 0.94803 0.92090 0.83195 1.21321 1.36898 1.09927 0.90466 0.92492 1.25643 0.96056 1.00694 0.95204 1.69988 1.46998 1.41320 0.98851 0.85819 0.79491 0.79822 0.78522 1.18980 1.19942 1.18206 1.22462 0.71957 0.87837 0.88384 1.90518 1.40726 1.17282 1.85698 1.20265 1.05299 0.93726 0.96115 1.21740 0.94585 1.01571 0.91532 1.21390 0.98119 0.92757 0.98939 1.21789 0.97667 0.95976 0.97959 1.17814 1.03488 0.77732 0.95926 1.91518 1.92693 1.31104 1.97092 1.21611 0.99300 0.93835 0.98366 0.90695 0.92182 0.91197 0.87042 0.87137 0.75699 0.96754 0.96903 0.91864 0.83594 0.80859 0.81712 0.83446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.92 71.98 0.64 -2.66 16 2 C -0.12 -2.71 1.80 -11.54 -0.02 -2.73 16 3 H 0.11 2.44 6.29 -2.39 -0.02 2.42 16 4 C -0.12 -3.11 4.68 29.85 0.14 -2.97 16 5 C 0.50 17.82 7.55 87.66 0.66 18.49 16 6 O -0.58 -24.03 13.97 -3.04 -0.04 -24.07 16 7 N -0.71 -27.95 5.55 -466.79 -2.59 -30.54 16 8 C 0.23 11.26 4.50 85.63 0.38 11.65 16 9 C -0.55 -30.35 9.83 25.60 0.25 -30.10 16 10 H 0.06 3.33 7.84 -2.91 -0.02 3.31 16 11 C 0.02 1.37 5.47 84.65 0.46 1.83 16 12 N -0.93 -56.00 13.96 21.45 0.30 -55.70 16 13 Si 0.94 43.95 27.47 68.60 1.88 45.83 16 14 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.26 -11.85 6.54 99.48 0.65 -11.20 16 17 C 0.42 8.90 6.17 28.03 0.17 9.08 16 18 O -0.47 -11.85 16.27 -2.96 -0.05 -11.90 16 19 C -0.15 -2.74 5.87 -20.16 -0.12 -2.86 16 20 C -0.08 -1.07 9.60 22.58 0.22 -0.85 16 21 C -0.09 -0.87 10.03 22.22 0.22 -0.64 16 22 C -0.12 -1.24 10.02 22.39 0.22 -1.02 16 23 C 0.07 1.12 7.29 22.33 0.16 1.29 16 24 F -0.15 -2.74 17.26 44.97 0.78 -1.97 16 25 C -0.11 -1.95 9.34 22.63 0.21 -1.74 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.33 8.14 -2.38 -0.02 1.32 16 28 H 0.07 2.02 5.95 -2.39 -0.01 2.01 16 29 H 0.11 2.67 8.02 -2.39 -0.02 2.65 16 30 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.41 14.33 8.32 -92.71 -0.77 13.56 16 32 H 0.01 0.74 7.20 -2.39 -0.02 0.72 16 33 H 0.01 0.65 7.57 -2.39 -0.02 0.64 16 34 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.15 1.89 7.65 -2.91 -0.02 1.87 16 36 H 0.17 0.42 8.06 -2.91 -0.02 0.39 16 37 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 38 H 0.15 2.52 6.36 -2.91 -0.02 2.50 16 Total: -1.00 -69.28 330.34 4.16 -65.12 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.27 Total: 16.47 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 3.61 Total: -3.25 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -2.29 Total: -86.24 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.09 Total: -35.97 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Total: -69.28 4.16 -65.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427632455.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.404 kcal (2) G-P(sol) polarization free energy of solvation -69.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds