Wall clock time and date at job start Tue Mar 31 2020 08:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47164 * 2 1 4 4 C 1.53006 * 109.47082 * 240.00488 * 2 1 3 5 5 C 1.50699 * 109.46998 * 64.99497 * 4 2 1 6 6 O 1.21278 * 120.00395 * 0.02562 * 5 4 2 7 7 N 1.34782 * 120.00058 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00101 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.46972 * 179.97438 * 8 7 5 10 10 H 1.07996 * 120.00364 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99798 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00092 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99969 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47012 * 89.99955 * 13 11 9 15 15 H 1.48502 * 109.47152 * 209.99870 * 13 11 9 16 16 H 1.48497 * 109.47165 * 330.00077 * 13 11 9 17 17 C 1.50693 * 109.47546 * 120.00267 * 2 1 3 18 18 O 1.21261 * 120.00008 * 94.99860 * 17 2 1 19 19 C 1.47175 * 120.00277 * 275.00085 * 17 2 1 20 20 C 1.39866 * 120.15801 * 179.97438 * 19 17 2 21 21 C 1.37880 * 119.87345 * 179.97438 * 20 19 17 22 22 C 1.38388 * 120.19884 * 0.27869 * 21 20 19 23 23 C 1.38587 * 120.32407 * 359.44691 * 22 21 20 24 24 F 1.35105 * 119.93792 * 180.27843 * 23 22 21 25 25 C 1.38140 * 120.12199 * 0.54948 * 23 22 21 26 26 H 1.08997 * 109.47550 * 59.99886 * 1 2 3 27 27 H 1.09000 * 109.47164 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47177 * 299.99303 * 1 2 3 29 29 H 1.09000 * 109.47393 * 184.99470 * 4 2 1 30 30 H 1.08998 * 109.47159 * 305.00031 * 4 2 1 31 31 H 0.97001 * 119.99523 * 0.02562 * 7 5 4 32 32 H 1.09000 * 109.47053 * 300.00418 * 8 7 5 33 33 H 1.09008 * 109.47054 * 60.00109 * 8 7 5 34 34 H 0.97006 * 120.00148 * 179.97438 * 12 11 9 35 35 H 1.07999 * 120.06827 * 359.95569 * 20 19 17 36 36 H 1.08002 * 119.89648 * 179.97438 * 21 20 19 37 37 H 1.07996 * 119.83478 * 179.71739 * 22 21 20 38 38 H 1.08006 * 120.10314 * 179.75180 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6412 0.0572 -2.4766 6 8 1.0115 1.0875 -2.3632 7 7 1.9851 -0.3911 -3.7002 8 6 1.5970 0.3652 -4.8933 9 6 2.1005 -0.3443 -6.1237 10 1 2.6539 -1.2667 -6.0268 11 6 1.8547 0.1840 -7.3733 12 7 1.1812 1.3074 -7.4914 13 14 2.4782 -0.6959 -8.8986 14 1 1.4474 -1.6535 -9.3737 15 1 2.7581 0.2993 -9.9646 16 1 3.7246 -1.4331 -8.5700 17 6 2.0324 -0.7104 1.2303 18 8 2.3208 -1.8870 1.1758 19 6 2.1730 0.0237 2.4982 20 6 2.6385 -0.6326 3.6422 21 6 2.7685 0.0609 4.8268 22 6 2.4343 1.4025 4.8882 23 6 1.9776 2.0623 3.7583 24 9 1.6590 3.3735 3.8258 25 6 1.8423 1.3804 2.5646 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 3.1263 -0.7993 -1.2058 30 1 1.6054 -1.7197 -1.2954 31 1 2.4891 -1.2150 -3.7909 32 1 0.5106 0.4426 -4.9370 33 1 2.0308 1.3642 -4.8473 34 1 1.0086 1.6794 -8.3705 35 1 2.8954 -1.6807 3.5980 36 1 3.1275 -0.4456 5.7105 37 1 2.5341 1.9389 5.8203 38 1 1.4826 1.8940 1.6851 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427632456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:50 Heat of formation + Delta-G solvation = -109.353327 kcal Electronic energy + Delta-G solvation = -22200.469296 eV Core-core repulsion = 18535.966541 eV Total energy + Delta-G solvation = -3664.502755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.22080 -40.55802 -38.99349 -38.23691 -34.65183 -33.88243 -32.35477 -31.78942 -30.85012 -28.52624 -26.56751 -25.54686 -23.54759 -22.83067 -21.96314 -19.95315 -19.33059 -18.15516 -17.08216 -16.71898 -16.54691 -15.99559 -15.92750 -15.55928 -15.22366 -15.09506 -14.72611 -14.46760 -14.39987 -14.05220 -13.47545 -13.35090 -12.70109 -12.65364 -12.46231 -12.30336 -12.15413 -11.94034 -11.86588 -11.51161 -11.16671 -10.99057 -10.93803 -10.86092 -10.31530 -9.82717 -9.55970 -9.40582 -9.17821 -9.01216 -8.74099 -7.89255 -6.17669 -4.24485 0.17000 0.75189 2.04637 3.23899 3.25285 3.30105 3.32491 3.34105 3.51443 3.84093 4.17543 4.27327 4.40098 4.49818 4.65769 4.69025 4.83622 4.99921 5.06126 5.18619 5.29760 5.40334 5.53280 5.60166 5.62334 5.70669 5.75784 5.77410 5.89112 5.96377 6.10142 6.37703 6.43065 7.24630 7.29633 7.42612 7.50341 7.65566 7.96081 8.61176 8.76430 9.07895 9.42257 10.92519 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.031437 B = 0.002667 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.461088 B =10494.701596 C =11031.630791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 H 0.106 0.894 4 C -0.131 4.131 5 C 0.500 3.500 6 O -0.556 6.556 7 N -0.712 5.712 8 C 0.249 3.751 9 C -0.544 4.544 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.886 5.886 13 Si 0.904 3.096 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 C 0.404 3.596 18 O -0.444 6.444 19 C -0.136 4.136 20 C -0.074 4.074 21 C -0.104 4.104 22 C -0.126 4.126 23 C 0.088 3.912 24 F -0.135 7.135 25 C -0.106 4.106 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.391 0.609 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.266 0.734 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 -2.777 24.636 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 H 0.124 0.876 4 C -0.172 4.172 5 C 0.285 3.715 6 O -0.436 6.436 7 N -0.359 5.359 8 C 0.129 3.871 9 C -0.582 4.582 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.197 1.197 17 C 0.281 3.719 18 O -0.319 6.319 19 C -0.137 4.137 20 C -0.093 4.093 21 C -0.122 4.122 22 C -0.145 4.145 23 C 0.069 3.931 24 F -0.114 7.114 25 C -0.125 4.125 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.224 0.776 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.298 -2.472 24.498 24.730 hybrid contribution 0.531 -0.425 -0.877 1.110 sum 2.828 -2.898 23.621 23.966 Atomic orbital electron populations 1.21873 0.91491 1.02571 1.04385 1.21342 0.98974 1.01435 0.91802 0.87589 1.21569 1.02741 1.00557 0.92285 1.20343 0.80382 0.85921 0.84901 1.90613 1.41196 1.24988 1.86784 1.46485 1.55370 1.27296 1.06790 1.19108 0.96216 0.91855 0.79964 1.21236 1.36908 1.09284 0.90769 0.91892 1.24953 0.94889 0.94936 0.99247 1.69973 1.39052 1.18984 1.24322 0.86415 0.79170 0.79249 0.82087 1.20446 1.20999 1.19740 1.22593 0.72977 0.87770 0.88592 1.90516 1.37736 1.17091 1.86508 1.20421 1.03206 0.94012 0.96071 1.21529 0.95447 1.00906 0.91388 1.21021 0.99478 0.93368 0.98372 1.21432 0.99443 0.95668 0.97980 1.17590 1.01849 0.78794 0.94883 1.91545 1.90517 1.32324 1.96987 1.21629 0.98930 0.94102 0.97822 0.88498 0.92617 0.92516 0.89167 0.88440 0.77600 0.95510 0.95514 0.92444 0.84129 0.84302 0.84275 0.83117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.92 37.16 0.33 -1.51 16 2 C -0.12 -1.47 1.66 -91.77 -0.15 -1.62 16 3 H 0.11 1.32 6.55 -51.93 -0.34 0.98 16 4 C -0.13 -1.85 4.62 -27.88 -0.13 -1.98 16 5 C 0.50 9.48 7.55 -10.98 -0.08 9.40 16 6 O -0.56 -12.28 13.97 5.56 0.08 -12.20 16 7 N -0.71 -14.73 5.55 -61.47 -0.34 -15.07 16 8 C 0.25 6.53 5.43 -5.20 -0.03 6.50 16 9 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 10 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 13 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 17 C 0.40 4.77 6.23 -30.68 -0.19 4.58 16 18 O -0.44 -6.11 16.19 5.57 0.09 -6.02 16 19 C -0.14 -1.37 5.87 -105.07 -0.62 -1.99 16 20 C -0.07 -0.63 9.60 -39.10 -0.38 -1.01 16 21 C -0.10 -0.69 10.03 -39.66 -0.40 -1.09 16 22 C -0.13 -0.91 10.02 -39.40 -0.39 -1.31 16 23 C 0.09 0.81 7.29 -39.49 -0.29 0.53 16 24 F -0.14 -1.39 17.26 2.25 0.04 -1.35 16 25 C -0.11 -1.02 9.34 -39.03 -0.36 -1.39 16 26 H 0.10 1.49 5.95 -51.93 -0.31 1.18 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.10 1.30 8.03 -51.93 -0.42 0.88 16 31 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.14 1.11 7.65 -52.49 -0.40 0.71 16 36 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.15 1.40 6.47 -52.48 -0.34 1.06 16 LS Contribution 334.10 15.07 5.03 5.03 Total: -1.00 -32.05 334.10 -7.13 -39.18 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.64 Total: 4.14 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -3.11 Total: -4.25 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.40 Total: -40.35 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.17 Total: -18.21 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.05 -7.13 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427632456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.172 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds