Wall clock time and date at job start Tue Mar 31 2020 08:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47164 * 2 1 4 4 C 1.53006 * 109.47082 * 240.00488 * 2 1 3 5 5 C 1.50699 * 109.46998 * 64.99497 * 4 2 1 6 6 O 1.21278 * 120.00395 * 0.02562 * 5 4 2 7 7 N 1.34782 * 120.00058 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00101 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.46972 * 179.97438 * 8 7 5 10 10 H 1.07996 * 120.00364 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99798 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00092 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99969 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47012 * 89.99955 * 13 11 9 15 15 H 1.48502 * 109.47152 * 209.99870 * 13 11 9 16 16 H 1.48497 * 109.47165 * 330.00077 * 13 11 9 17 17 C 1.50693 * 109.47546 * 120.00267 * 2 1 3 18 18 O 1.21261 * 120.00008 * 94.99860 * 17 2 1 19 19 C 1.47175 * 120.00277 * 275.00085 * 17 2 1 20 20 C 1.39866 * 120.15801 * 179.97438 * 19 17 2 21 21 C 1.37880 * 119.87345 * 179.97438 * 20 19 17 22 22 C 1.38388 * 120.19884 * 0.27869 * 21 20 19 23 23 C 1.38587 * 120.32407 * 359.44691 * 22 21 20 24 24 F 1.35105 * 119.93792 * 180.27843 * 23 22 21 25 25 C 1.38140 * 120.12199 * 0.54948 * 23 22 21 26 26 H 1.08997 * 109.47550 * 59.99886 * 1 2 3 27 27 H 1.09000 * 109.47164 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47177 * 299.99303 * 1 2 3 29 29 H 1.09000 * 109.47393 * 184.99470 * 4 2 1 30 30 H 1.08998 * 109.47159 * 305.00031 * 4 2 1 31 31 H 0.97001 * 119.99523 * 0.02562 * 7 5 4 32 32 H 1.09000 * 109.47053 * 300.00418 * 8 7 5 33 33 H 1.09008 * 109.47054 * 60.00109 * 8 7 5 34 34 H 0.97006 * 120.00148 * 179.97438 * 12 11 9 35 35 H 1.07999 * 120.06827 * 359.95569 * 20 19 17 36 36 H 1.08002 * 119.89648 * 179.97438 * 21 20 19 37 37 H 1.07996 * 119.83478 * 179.71739 * 22 21 20 38 38 H 1.08006 * 120.10314 * 179.75180 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6412 0.0572 -2.4766 6 8 1.0115 1.0875 -2.3632 7 7 1.9851 -0.3911 -3.7002 8 6 1.5970 0.3652 -4.8933 9 6 2.1005 -0.3443 -6.1237 10 1 2.6539 -1.2667 -6.0268 11 6 1.8547 0.1840 -7.3733 12 7 1.1812 1.3074 -7.4914 13 14 2.4782 -0.6959 -8.8986 14 1 1.4474 -1.6535 -9.3737 15 1 2.7581 0.2993 -9.9646 16 1 3.7246 -1.4331 -8.5700 17 6 2.0324 -0.7104 1.2303 18 8 2.3208 -1.8870 1.1758 19 6 2.1730 0.0237 2.4982 20 6 2.6385 -0.6326 3.6422 21 6 2.7685 0.0609 4.8268 22 6 2.4343 1.4025 4.8882 23 6 1.9776 2.0623 3.7583 24 9 1.6590 3.3735 3.8258 25 6 1.8423 1.3804 2.5646 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 3.1263 -0.7993 -1.2058 30 1 1.6054 -1.7197 -1.2954 31 1 2.4891 -1.2150 -3.7909 32 1 0.5106 0.4426 -4.9370 33 1 2.0308 1.3642 -4.8473 34 1 1.0086 1.6794 -8.3705 35 1 2.8954 -1.6807 3.5980 36 1 3.1275 -0.4456 5.7105 37 1 2.5341 1.9389 5.8203 38 1 1.4826 1.8940 1.6851 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427632456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:49 Heat of formation + Delta-G solvation = -129.381553 kcal Electronic energy + Delta-G solvation = -22201.337785 eV Core-core repulsion = 18535.966541 eV Total energy + Delta-G solvation = -3665.371244 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.95040 -41.52832 -40.39830 -39.10474 -36.30814 -35.26981 -34.35066 -32.53410 -31.50181 -30.12970 -28.22359 -26.44419 -24.83195 -24.01801 -23.05981 -21.40997 -20.44243 -19.21845 -18.57050 -17.76462 -17.26117 -17.21031 -16.98839 -16.75936 -16.64743 -16.30820 -15.99609 -15.83403 -15.56813 -15.04174 -14.55152 -14.44672 -14.12861 -14.02287 -13.83286 -13.64171 -13.20757 -13.02528 -12.89555 -12.82429 -12.68395 -12.53111 -12.25378 -12.17131 -12.04196 -11.48526 -10.90419 -10.80400 -10.55824 -10.19883 -9.84600 -9.79785 -8.29706 -6.45897 -0.55152 0.11090 1.23120 1.42750 1.44817 1.56071 1.76797 2.28978 2.46697 2.57971 2.91298 3.05233 3.20353 3.52750 3.67530 3.89135 3.94932 4.03215 4.06810 4.21559 4.27530 4.45363 4.60416 4.65044 4.67684 4.84644 4.89069 5.00816 5.05796 5.12686 5.15814 5.25349 5.27569 5.31762 5.50505 5.70600 5.75837 5.85488 6.33545 6.65297 6.90879 7.23308 7.49114 8.82369 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.031437 B = 0.002667 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.461088 B =10494.701596 C =11031.630791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 H 0.105 0.895 4 C -0.118 4.118 5 C 0.498 3.502 6 O -0.589 6.589 7 N -0.710 5.710 8 C 0.266 3.734 9 C -0.557 4.557 10 H 0.082 0.918 11 C 0.004 3.996 12 N -0.930 5.930 13 Si 0.983 3.017 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.257 1.257 17 C 0.416 3.584 18 O -0.465 6.465 19 C -0.153 4.153 20 C -0.075 4.075 21 C -0.094 4.094 22 C -0.115 4.115 23 C 0.069 3.931 24 F -0.146 7.146 25 C -0.113 4.113 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.407 0.593 32 H -0.011 1.011 33 H -0.011 1.011 34 H 0.269 0.731 35 H 0.148 0.852 36 H 0.175 0.825 37 H 0.166 0.834 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.135 -4.620 26.409 27.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 H 0.123 0.877 4 C -0.158 4.158 5 C 0.286 3.714 6 O -0.471 6.471 7 N -0.360 5.360 8 C 0.144 3.856 9 C -0.595 4.595 10 H 0.100 0.900 11 C -0.196 4.196 12 N -0.569 5.569 13 Si 0.806 3.194 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.180 1.180 17 C 0.295 3.705 18 O -0.341 6.341 19 C -0.154 4.154 20 C -0.093 4.093 21 C -0.111 4.111 22 C -0.133 4.133 23 C 0.050 3.950 24 F -0.125 7.125 25 C -0.132 4.132 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.243 0.757 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.078 0.922 35 H 0.165 0.835 36 H 0.193 0.807 37 H 0.183 0.817 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.765 -4.340 26.308 26.928 hybrid contribution 0.050 0.212 -1.304 1.322 sum 3.815 -4.128 25.004 25.628 Atomic orbital electron populations 1.21782 0.91638 1.02730 1.03737 1.21347 0.98958 1.01471 0.91930 0.87738 1.21527 1.04094 1.00254 0.89920 1.21210 0.79011 0.85612 0.85576 1.90605 1.42393 1.26758 1.87314 1.46252 1.56094 1.27657 1.05993 1.18537 0.93579 0.91011 0.82509 1.21631 1.36897 1.09885 0.91063 0.90006 1.26045 0.94815 0.95592 1.03102 1.70131 1.40497 1.20906 1.25360 0.85180 0.79101 0.77917 0.77173 1.19612 1.20898 1.18034 1.22427 0.72081 0.87307 0.88706 1.90511 1.39038 1.17756 1.86800 1.20249 1.05213 0.94060 0.95833 1.21741 0.94756 1.01360 0.91469 1.21399 0.98001 0.92974 0.98773 1.21788 0.97451 0.95973 0.98135 1.17821 1.02991 0.78569 0.95606 1.91518 1.90791 1.33092 1.97055 1.21605 0.99336 0.94157 0.98124 0.91628 0.92000 0.90638 0.87085 0.86952 0.75731 0.99296 0.99289 0.92244 0.83471 0.80749 0.81668 0.83698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.92 71.98 0.64 -2.96 16 2 C -0.12 -2.94 1.66 -11.54 -0.02 -2.96 16 3 H 0.10 2.65 6.55 -2.39 -0.02 2.64 16 4 C -0.12 -3.24 4.62 29.85 0.14 -3.10 16 5 C 0.50 19.32 7.55 87.66 0.66 19.98 16 6 O -0.59 -27.25 13.97 -3.02 -0.04 -27.29 16 7 N -0.71 -29.95 5.55 -466.78 -2.59 -32.54 16 8 C 0.27 14.59 5.43 85.63 0.46 15.05 16 9 C -0.56 -30.42 9.28 25.60 0.24 -30.18 16 10 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 11 C 0.00 0.23 5.46 84.65 0.46 0.69 16 12 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 13 Si 0.98 42.50 29.54 68.60 2.03 44.53 16 14 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 16 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 17 C 0.42 9.36 6.23 28.03 0.17 9.54 16 18 O -0.47 -12.06 16.19 -2.97 -0.05 -12.10 16 19 C -0.15 -2.87 5.87 -20.16 -0.12 -2.99 16 20 C -0.08 -1.09 9.60 22.58 0.22 -0.87 16 21 C -0.09 -0.90 10.03 22.22 0.22 -0.68 16 22 C -0.11 -1.31 10.02 22.39 0.22 -1.08 16 23 C 0.07 1.19 7.29 22.33 0.16 1.35 16 24 F -0.15 -2.92 17.26 44.97 0.78 -2.14 16 25 C -0.11 -2.11 9.34 22.63 0.21 -1.90 16 26 H 0.06 2.11 5.95 -2.39 -0.01 2.10 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.11 2.63 8.14 -2.39 -0.02 2.62 16 30 H 0.11 2.82 8.03 -2.39 -0.02 2.80 16 31 H 0.41 14.41 8.32 -92.71 -0.77 13.64 16 32 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 33 H -0.01 -0.67 8.14 -2.38 -0.02 -0.68 16 34 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 35 H 0.15 1.94 7.65 -2.91 -0.02 1.92 16 36 H 0.18 0.46 8.06 -2.91 -0.02 0.43 16 37 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 38 H 0.15 2.75 6.47 -2.91 -0.02 2.73 16 Total: -1.00 -71.75 334.10 4.41 -67.34 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.32 Total: 18.22 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 3.68 Total: -0.13 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -2.30 Total: -88.42 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.09 Total: -39.39 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -71.75 4.41 -67.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427632456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.040 kcal (2) G-P(sol) polarization free energy of solvation -71.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds