Wall clock time and date at job start Tue Mar 31 2020 06:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46791 * 2 1 4 4 N 1.46506 * 109.46863 * 180.02562 * 3 2 1 5 5 C 1.46493 * 120.00104 * 90.00210 * 4 3 2 6 6 C 1.52997 * 109.47327 * 74.89217 * 5 4 3 7 7 C 1.34779 * 119.99899 * 269.99865 * 4 3 2 8 8 O 1.21556 * 119.99832 * 3.55497 * 7 4 3 9 9 C 1.47856 * 120.00114 * 183.55238 * 7 4 3 10 10 C 1.39676 * 120.09964 * 22.97469 * 9 7 4 11 11 C 1.38044 * 120.03592 * 179.74256 * 10 9 7 12 12 C 1.38172 * 120.24385 * 0.55333 * 11 10 9 13 13 C 1.39179 * 120.20369 * 359.70017 * 12 11 10 14 14 S 1.76198 * 120.01920 * 179.97438 * 13 12 11 15 15 C 1.76207 * 99.99933 * 265.08588 * 14 13 12 16 16 H 1.07994 * 119.99660 * 5.01772 * 15 14 13 17 17 C 1.38728 * 119.99674 * 185.01587 * 15 14 13 18 18 N 1.31626 * 120.00336 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99793 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47044 * 89.99743 * 19 17 15 21 21 H 1.48498 * 109.47068 * 210.00304 * 19 17 15 22 22 H 1.48508 * 109.46812 * 330.00003 * 19 17 15 23 23 C 1.38874 * 119.95970 * 0.02562 * 13 12 11 24 24 H 1.09002 * 109.46820 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47113 * 299.99728 * 1 2 3 26 26 H 1.08996 * 109.47403 * 60.00333 * 1 2 3 27 27 H 1.08997 * 109.47113 * 240.00272 * 2 1 3 28 28 H 1.08996 * 109.46998 * 120.00023 * 2 1 3 29 29 H 1.08996 * 109.47368 * 299.99796 * 3 2 1 30 30 H 1.08997 * 109.47070 * 60.00246 * 3 2 1 31 31 H 1.09003 * 109.47402 * 194.88917 * 5 4 3 32 32 H 1.09003 * 109.46897 * 314.88856 * 5 4 3 33 33 H 1.09005 * 109.46965 * 299.99472 * 6 5 4 34 34 H 1.08995 * 109.47258 * 59.99683 * 6 5 4 35 35 H 1.09003 * 109.47215 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.97997 * 359.97438 * 10 9 7 37 37 H 1.08003 * 119.87616 * 180.25408 * 11 10 9 38 38 H 1.08003 * 119.89890 * 179.71739 * 12 11 10 39 39 H 0.97005 * 119.99914 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.12561 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2369 1.4428 -1.2696 6 6 4.1661 2.8355 -1.8990 7 6 4.1793 1.4424 1.1663 8 8 3.5737 1.3770 2.2182 9 6 5.6558 1.5218 1.1670 10 6 6.3286 2.0647 0.0700 11 6 7.7068 2.1430 0.0743 12 6 8.4271 1.6753 1.1566 13 6 7.7673 1.1275 2.2528 14 16 8.6907 0.5318 3.6301 15 6 8.8073 -1.1744 3.2055 16 1 8.4277 -1.5216 2.2560 17 6 9.3867 -2.0715 4.0910 18 7 9.8489 -1.6483 5.2485 19 14 9.5110 -3.8801 3.6405 20 1 10.7950 -4.1279 2.9369 21 1 9.4564 -4.7027 4.8756 22 1 8.3800 -4.2474 2.7508 23 6 6.3807 1.0497 2.2599 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 5.2788 1.1787 -1.0882 32 1 3.7902 0.7148 -1.9468 33 1 3.1242 3.0996 -2.0805 34 1 4.6127 3.5634 -1.2218 35 1 4.7111 2.8358 -2.8430 36 1 5.7700 2.4269 -0.7804 37 1 8.2242 2.5671 -0.7736 38 1 9.5054 1.7351 1.1521 39 1 10.2544 -2.2755 5.8674 40 1 5.8660 0.6255 3.1093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429956590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:37 Heat of formation + Delta-G solvation = 6.126059 kcal Electronic energy + Delta-G solvation = -20935.426629 eV Core-core repulsion = 17842.144612 eV Total energy + Delta-G solvation = -3093.282017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.50160 -37.92690 -36.50455 -34.17218 -32.50793 -30.97211 -30.80045 -30.16269 -26.59053 -25.57151 -23.88420 -22.89713 -22.42573 -21.53035 -19.47884 -17.97998 -17.09359 -16.86431 -16.08613 -15.33508 -15.13439 -14.85353 -14.83716 -14.22294 -13.99303 -13.69878 -13.52802 -13.33927 -12.82773 -12.72775 -12.50133 -12.29443 -12.15448 -11.86533 -11.58086 -11.46384 -11.17633 -11.13294 -11.09097 -10.96494 -10.81453 -10.60804 -9.95420 -9.60273 -9.16319 -8.97779 -8.80471 -8.53307 -7.97395 -6.70556 -6.28495 -4.02391 1.21495 1.67130 2.90239 3.03558 3.19240 3.21917 3.27550 3.47110 4.06258 4.24588 4.51329 4.64407 4.78518 4.87733 4.98258 5.07672 5.09245 5.15109 5.17736 5.27175 5.32176 5.44500 5.48099 5.52797 5.57082 5.61637 5.74433 5.83951 5.86997 5.93385 5.95973 6.04510 6.12064 6.27934 6.49360 6.61714 6.66273 6.94745 7.21455 7.38039 7.57069 8.27687 8.32336 9.17051 10.78178 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.004189 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.978574 B = 6683.295711 C = 7530.835626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.118 3.882 4 N -0.611 5.611 5 C 0.069 3.931 6 C -0.179 4.179 7 C 0.564 3.436 8 O -0.533 6.533 9 C -0.153 4.153 10 C -0.127 4.127 11 C -0.143 4.143 12 C -0.057 4.057 13 C -0.106 4.106 14 S -0.035 6.035 15 C -0.520 4.520 16 H 0.075 0.925 17 C 0.074 3.926 18 N -0.870 5.870 19 Si 0.920 3.080 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.271 1.271 23 C -0.021 4.021 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.155 0.845 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.270 0.730 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.221 7.145 -16.084 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C -0.005 4.005 4 N -0.344 5.344 5 C -0.054 4.054 6 C -0.237 4.237 7 C 0.354 3.646 8 O -0.410 6.410 9 C -0.157 4.157 10 C -0.145 4.145 11 C -0.163 4.163 12 C -0.078 4.078 13 C -0.216 4.216 14 S 0.199 5.801 15 C -0.667 4.667 16 H 0.093 0.907 17 C -0.135 4.135 18 N -0.505 5.505 19 Si 0.746 3.254 20 H -0.201 1.201 21 H -0.206 1.206 22 H -0.196 1.196 23 C -0.043 4.043 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.135 0.865 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.171 0.829 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.079 0.921 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.019 7.592 -14.365 20.211 hybrid contribution -0.425 -1.782 -1.429 2.323 sum -12.444 5.810 -15.795 20.931 Atomic orbital electron populations 1.21681 0.95222 1.01891 1.01758 1.21889 0.96036 0.97343 1.02745 1.21468 0.79122 0.97041 1.02865 1.47827 1.06408 1.74293 1.05909 1.22511 1.00266 0.97473 0.85116 1.22295 1.02788 0.97395 1.01253 1.18523 0.87462 0.75496 0.83135 1.90761 1.69930 1.49404 1.30950 1.19835 0.92055 1.06677 0.97174 1.22341 0.95301 0.99010 0.97828 1.21112 0.93861 1.02259 0.99037 1.21959 1.00354 0.93896 0.91632 1.22826 0.96154 1.01195 1.01469 1.83620 1.65778 1.08411 1.22276 1.22835 1.46033 0.91622 1.06253 0.90664 1.24998 0.94675 0.99558 0.94313 1.69990 1.37170 1.35589 1.07760 0.86129 0.78744 0.82348 0.78141 1.20138 1.20635 1.19616 1.21911 0.93256 0.93101 0.95998 0.92522 0.92450 0.92829 0.92035 0.91228 0.90791 0.89917 0.86463 0.91012 0.91925 0.91439 0.90993 0.82858 0.85892 0.85169 0.92051 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.87 16 2 C -0.14 -1.48 6.26 -26.73 -0.17 -1.65 16 3 C 0.12 1.27 5.33 -4.04 -0.02 1.24 16 4 N -0.61 -7.71 2.51 -174.80 -0.44 -8.15 16 5 C 0.07 0.65 5.59 -4.05 -0.02 0.63 16 6 C -0.18 -1.30 9.05 37.16 0.34 -0.96 16 7 C 0.56 9.56 7.52 -12.32 -0.09 9.46 16 8 O -0.53 -10.84 16.19 5.32 0.09 -10.76 16 9 C -0.15 -2.66 5.60 -105.00 -0.59 -3.25 16 10 C -0.13 -1.78 7.51 -39.12 -0.29 -2.07 16 11 C -0.14 -2.06 10.02 -39.68 -0.40 -2.45 16 12 C -0.06 -1.03 9.79 -39.26 -0.38 -1.42 16 13 C -0.11 -2.29 5.45 -39.00 -0.21 -2.50 16 14 S -0.04 -0.92 21.41 -107.50 -2.30 -3.22 16 15 C -0.52 -14.72 9.46 30.91 0.29 -14.43 16 16 H 0.08 2.10 7.79 -52.49 -0.41 1.70 16 17 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 18 N -0.87 -25.53 13.22 55.49 0.73 -24.80 16 19 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C -0.02 -0.44 9.34 -38.92 -0.36 -0.80 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.60 7.31 -51.93 -0.38 0.22 16 30 H 0.08 1.01 7.47 -51.93 -0.39 0.62 16 31 H 0.12 1.24 4.02 -52.50 -0.21 1.02 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.42 7.42 -51.93 -0.39 0.03 16 34 H 0.07 0.56 7.03 -51.93 -0.36 0.19 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.15 1.63 2.33 -52.49 -0.12 1.51 16 37 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 38 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.14 3.06 7.82 -52.49 -0.41 2.65 16 LS Contribution 343.13 15.07 5.17 5.17 Total: -1.00 -32.61 343.13 -9.03 -41.64 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.61 Total: 0.80 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -1.64 Total: -17.10 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.29 Total: -32.95 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.61 -9.03 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429956590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.767 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds