Wall clock time and date at job start Tue Mar 31 2020 06:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46791 * 2 1 4 4 N 1.46506 * 109.46863 * 180.02562 * 3 2 1 5 5 C 1.46493 * 120.00104 * 90.00210 * 4 3 2 6 6 C 1.52997 * 109.47327 * 74.89217 * 5 4 3 7 7 C 1.34779 * 119.99899 * 269.99865 * 4 3 2 8 8 O 1.21556 * 119.99832 * 3.55497 * 7 4 3 9 9 C 1.47856 * 120.00114 * 183.55238 * 7 4 3 10 10 C 1.39676 * 120.09964 * 22.97469 * 9 7 4 11 11 C 1.38044 * 120.03592 * 179.74256 * 10 9 7 12 12 C 1.38172 * 120.24385 * 0.55333 * 11 10 9 13 13 C 1.39179 * 120.20369 * 359.70017 * 12 11 10 14 14 S 1.76198 * 120.01920 * 179.97438 * 13 12 11 15 15 C 1.76207 * 99.99933 * 265.08588 * 14 13 12 16 16 H 1.07994 * 119.99660 * 5.01772 * 15 14 13 17 17 C 1.38728 * 119.99674 * 185.01587 * 15 14 13 18 18 N 1.31626 * 120.00336 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99793 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47044 * 89.99743 * 19 17 15 21 21 H 1.48498 * 109.47068 * 210.00304 * 19 17 15 22 22 H 1.48508 * 109.46812 * 330.00003 * 19 17 15 23 23 C 1.38874 * 119.95970 * 0.02562 * 13 12 11 24 24 H 1.09002 * 109.46820 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47113 * 299.99728 * 1 2 3 26 26 H 1.08996 * 109.47403 * 60.00333 * 1 2 3 27 27 H 1.08997 * 109.47113 * 240.00272 * 2 1 3 28 28 H 1.08996 * 109.46998 * 120.00023 * 2 1 3 29 29 H 1.08996 * 109.47368 * 299.99796 * 3 2 1 30 30 H 1.08997 * 109.47070 * 60.00246 * 3 2 1 31 31 H 1.09003 * 109.47402 * 194.88917 * 5 4 3 32 32 H 1.09003 * 109.46897 * 314.88856 * 5 4 3 33 33 H 1.09005 * 109.46965 * 299.99472 * 6 5 4 34 34 H 1.08995 * 109.47258 * 59.99683 * 6 5 4 35 35 H 1.09003 * 109.47215 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.97997 * 359.97438 * 10 9 7 37 37 H 1.08003 * 119.87616 * 180.25408 * 11 10 9 38 38 H 1.08003 * 119.89890 * 179.71739 * 12 11 10 39 39 H 0.97005 * 119.99914 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.12561 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2369 1.4428 -1.2696 6 6 4.1661 2.8355 -1.8990 7 6 4.1793 1.4424 1.1663 8 8 3.5737 1.3770 2.2182 9 6 5.6558 1.5218 1.1670 10 6 6.3286 2.0647 0.0700 11 6 7.7068 2.1430 0.0743 12 6 8.4271 1.6753 1.1566 13 6 7.7673 1.1275 2.2528 14 16 8.6907 0.5318 3.6301 15 6 8.8073 -1.1744 3.2055 16 1 8.4277 -1.5216 2.2560 17 6 9.3867 -2.0715 4.0910 18 7 9.8489 -1.6483 5.2485 19 14 9.5110 -3.8801 3.6405 20 1 10.7950 -4.1279 2.9369 21 1 9.4564 -4.7027 4.8756 22 1 8.3800 -4.2474 2.7508 23 6 6.3807 1.0497 2.2599 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 5.2788 1.1787 -1.0882 32 1 3.7902 0.7148 -1.9468 33 1 3.1242 3.0996 -2.0805 34 1 4.6127 3.5634 -1.2218 35 1 4.7111 2.8358 -2.8430 36 1 5.7700 2.4269 -0.7804 37 1 8.2242 2.5671 -0.7736 38 1 9.5054 1.7351 1.1521 39 1 10.2544 -2.2755 5.8674 40 1 5.8660 0.6255 3.1093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429956590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:36 Heat of formation + Delta-G solvation = -13.064328 kcal Electronic energy + Delta-G solvation = -20936.258787 eV Core-core repulsion = 17842.144612 eV Total energy + Delta-G solvation = -3094.114174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.72200 -39.27330 -37.64509 -35.04080 -34.66740 -32.17895 -32.07002 -31.22770 -27.77342 -27.52441 -24.89334 -23.89920 -23.77955 -22.53406 -20.70226 -19.81029 -18.50178 -18.05799 -17.25598 -16.94763 -16.66837 -16.31641 -15.83860 -15.51263 -15.25802 -15.06819 -14.76071 -14.45781 -14.27195 -13.83793 -13.56768 -13.22540 -13.16154 -12.97572 -12.95858 -12.86739 -12.70246 -12.43534 -12.33559 -12.23347 -12.03120 -11.65269 -11.60543 -11.24266 -10.95210 -10.75663 -10.05943 -9.72669 -9.62039 -8.82301 -8.40331 -6.21072 -0.17429 0.22314 1.28224 1.36520 1.45059 1.63381 1.68474 1.94177 2.22911 2.72642 2.92503 3.39483 3.40581 3.83635 3.92605 3.99044 4.02399 4.11585 4.28305 4.33879 4.35363 4.42571 4.52050 4.55855 4.65129 4.70123 4.87060 4.89379 4.91283 4.97385 5.12429 5.17269 5.22666 5.26528 5.32380 5.36316 5.41082 5.48646 5.57683 5.85765 6.14221 6.25703 6.99521 7.03278 8.66764 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.004189 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.978574 B = 6683.295711 C = 7530.835626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.114 3.886 4 N -0.599 5.599 5 C 0.059 3.941 6 C -0.177 4.177 7 C 0.555 3.445 8 O -0.584 6.584 9 C -0.157 4.157 10 C -0.099 4.099 11 C -0.121 4.121 12 C -0.064 4.064 13 C -0.127 4.127 14 S -0.097 6.097 15 C -0.537 4.537 16 H 0.068 0.932 17 C 0.020 3.980 18 N -0.906 5.906 19 Si 0.993 3.007 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.269 1.269 23 C -0.049 4.049 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.029 0.971 29 H 0.116 0.884 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.200 0.800 37 H 0.179 0.821 38 H 0.137 0.863 39 H 0.274 0.726 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.073 7.721 -20.986 25.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C -0.008 4.008 4 N -0.330 5.330 5 C -0.062 4.062 6 C -0.235 4.235 7 C 0.345 3.655 8 O -0.465 6.465 9 C -0.162 4.162 10 C -0.116 4.116 11 C -0.140 4.140 12 C -0.085 4.085 13 C -0.238 4.238 14 S 0.138 5.862 15 C -0.684 4.684 16 H 0.086 0.914 17 C -0.185 4.185 18 N -0.543 5.543 19 Si 0.815 3.185 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.193 1.193 23 C -0.070 4.070 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.048 0.952 29 H 0.134 0.866 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.216 0.784 37 H 0.196 0.804 38 H 0.154 0.846 39 H 0.083 0.917 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.878 8.186 -19.321 24.620 hybrid contribution -0.280 -1.855 -0.066 1.877 sum -13.158 6.330 -19.387 24.271 Atomic orbital electron populations 1.21656 0.93423 1.02422 1.02603 1.21851 0.97623 0.96825 1.01400 1.21673 0.77837 0.97413 1.03835 1.47949 1.07371 1.71974 1.05710 1.22802 0.99432 1.00173 0.83816 1.22298 1.04217 0.94889 1.02053 1.18590 0.87365 0.75658 0.83906 1.90733 1.70647 1.52023 1.33084 1.19956 0.92636 1.06531 0.97094 1.22912 0.95520 0.95928 0.97265 1.21640 0.93803 0.99781 0.98797 1.22093 1.01015 0.93765 0.91601 1.22480 0.95893 1.04139 1.01320 1.83509 1.67358 1.08510 1.26855 1.23064 1.46277 0.92805 1.06242 0.91411 1.26022 0.93933 1.04523 0.94053 1.70116 1.37937 1.37367 1.08854 0.85034 0.79224 0.76092 0.78179 1.18489 1.19735 1.19329 1.21579 0.93246 0.95492 0.96731 0.92214 0.93212 0.90340 0.90663 0.95221 0.86630 0.91998 0.87494 0.88414 0.90705 0.92226 0.88018 0.78409 0.80373 0.84559 0.91673 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.14 -2.73 6.26 30.59 0.19 -2.54 16 3 C 0.11 2.23 5.33 86.38 0.46 2.69 16 4 N -0.60 -13.93 2.51 -825.21 -2.07 -16.00 16 5 C 0.06 0.84 5.59 86.38 0.48 1.33 16 6 C -0.18 -1.52 9.05 71.98 0.65 -0.87 16 7 C 0.55 19.09 7.52 86.79 0.65 19.74 16 8 O -0.58 -25.34 16.19 -3.89 -0.06 -25.40 16 9 C -0.16 -5.50 5.60 -20.11 -0.11 -5.61 16 10 C -0.10 -2.45 7.51 22.57 0.17 -2.28 16 11 C -0.12 -3.01 10.02 22.21 0.22 -2.78 16 12 C -0.06 -2.26 9.79 22.48 0.22 -2.04 16 13 C -0.13 -5.78 5.45 22.65 0.12 -5.66 16 14 S -0.10 -5.42 21.41 -56.49 -1.21 -6.63 16 15 C -0.54 -31.90 9.46 67.94 0.64 -31.25 16 16 H 0.07 3.97 7.79 -2.91 -0.02 3.95 16 17 C 0.02 1.15 5.49 84.84 0.47 1.62 16 18 N -0.91 -55.26 13.22 21.64 0.29 -54.97 16 19 Si 0.99 44.85 29.55 68.60 2.03 46.87 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 C -0.05 -2.16 9.34 22.70 0.21 -1.95 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 28 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.12 1.33 7.31 -2.39 -0.02 1.32 16 30 H 0.06 1.50 7.47 -2.39 -0.02 1.48 16 31 H 0.11 1.76 4.02 -2.92 -0.01 1.75 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 0.54 7.42 -2.38 -0.02 0.52 16 34 H 0.06 0.65 7.03 -2.39 -0.02 0.63 16 35 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.20 3.15 2.33 -2.91 -0.01 3.15 16 37 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 39 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 40 H 0.10 4.95 7.82 -2.91 -0.02 4.92 16 Total: -1.00 -79.53 343.13 5.10 -74.44 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.03 Total: 12.74 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 5.10 Total: -31.04 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -1.79 Total: -70.98 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.06 Total: -25.40 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: -5.42 SS G_CDS: -1.21 Total: -6.63 kcal Total: -79.53 5.10 -74.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429956590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.371 kcal (2) G-P(sol) polarization free energy of solvation -79.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds