Wall clock time and date at job start Tue Mar 31 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99700 * 2 1 4 4 N 1.46506 * 109.47106 * 125.00371 * 3 2 1 5 5 C 1.46499 * 119.99537 * 270.00004 * 4 3 2 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 3 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00096 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46927 * 59.99717 * 10 8 6 12 12 H 1.48496 * 109.47287 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47040 * 299.99940 * 10 8 6 14 14 C 1.34777 * 120.00264 * 89.99354 * 4 3 2 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 3 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 4 18 18 C 1.38264 * 119.93461 * 269.72057 * 17 16 14 19 19 C 1.38179 * 120.09375 * 179.77027 * 18 17 16 20 20 C 1.38655 * 119.96828 * 0.50833 * 19 18 17 21 21 O 1.35961 * 120.06527 * 179.72648 * 20 19 18 22 22 C 1.38908 * 119.87626 * 359.74529 * 20 19 18 23 23 F 1.35102 * 120.04855 * 179.97438 * 22 20 19 24 24 C 1.38250 * 119.93793 * 90.00078 * 17 16 14 25 25 H 1.07992 * 119.99585 * 180.02562 * 1 2 3 26 26 H 1.07995 * 119.99516 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00412 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47456 * 5.00330 * 3 2 1 29 29 H 1.09001 * 109.47250 * 244.99774 * 3 2 1 30 30 H 1.09001 * 109.47567 * 29.99407 * 5 4 3 31 31 H 1.09005 * 109.47076 * 149.99913 * 5 4 3 32 32 H 0.96991 * 119.99957 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 4 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 4 35 35 H 1.08002 * 119.95263 * 0.02562 * 18 17 16 36 36 H 1.07997 * 120.01636 * 180.25143 * 19 18 17 37 37 H 0.96703 * 113.99576 * 270.02356 * 21 20 19 38 38 H 1.08005 * 119.98588 * 359.95352 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3034 3.8371 1.6365 8 6 2.5194 4.0665 3.6086 9 7 1.9608 3.4656 4.6365 10 14 2.8725 5.8996 3.6772 11 1 2.1358 6.5867 2.5862 12 1 2.4317 6.4399 4.9883 13 1 4.3302 6.1294 3.5114 14 6 4.2498 0.8662 0.9824 15 8 5.0197 0.8880 1.9192 16 6 4.6991 0.3236 -0.3498 17 6 6.1352 -0.1226 -0.2520 18 6 7.1549 0.7667 -0.5366 19 6 8.4729 0.3624 -0.4433 20 6 8.7735 -0.9398 -0.0740 21 8 10.0695 -1.3413 0.0131 22 6 7.7479 -1.8337 0.2066 23 9 8.0367 -3.1035 0.5663 24 6 6.4303 -1.4220 0.1166 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 1.4888 1.6967 2.5459 31 1 3.0990 1.3603 3.2260 32 1 1.7319 3.9742 5.4300 33 1 4.0730 -0.5248 -0.6265 34 1 4.6113 1.1022 -1.1075 35 1 6.9210 1.7799 -0.8282 36 1 9.2685 1.0592 -0.6619 37 1 10.4256 -1.7021 -0.8105 38 1 5.6319 -2.1158 0.3347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451964748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:42 Heat of formation + Delta-G solvation = -77.385551 kcal Electronic energy + Delta-G solvation = -22878.593048 eV Core-core repulsion = 19215.476520 eV Total energy + Delta-G solvation = -3663.116528 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.86952 -39.92117 -38.88682 -36.97957 -35.64491 -33.26077 -32.18889 -31.82422 -30.65761 -28.17995 -26.60558 -25.37140 -23.13300 -22.91123 -21.60872 -19.99755 -18.70995 -18.47406 -17.00144 -16.76932 -16.53025 -16.36785 -15.97348 -15.56157 -15.12840 -14.78522 -14.49190 -14.15890 -14.04163 -13.93913 -13.36884 -13.13404 -12.75030 -12.56078 -12.21794 -11.79181 -11.76045 -11.68341 -11.55113 -11.23807 -11.03877 -10.92476 -10.68652 -10.58668 -10.20099 -9.67807 -9.23122 -9.10350 -8.89209 -8.47285 -8.43602 -7.72463 -6.05062 -4.10126 1.00491 1.14451 2.40678 3.30348 3.32688 3.35759 3.37736 3.40487 3.86003 4.05570 4.26474 4.44040 4.61817 4.74305 5.04135 5.15160 5.18662 5.26424 5.30126 5.36334 5.40170 5.51510 5.60435 5.76575 5.91677 5.97656 5.99959 6.11959 6.15458 6.45822 6.67413 6.75114 6.87074 7.06027 7.43379 7.44751 7.51655 7.90820 8.21933 8.36312 8.87879 9.04795 9.54884 11.03067 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.004270 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.339615 B = 6555.386128 C = 7737.695642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.135 3.865 4 N -0.593 5.593 5 C 0.248 3.752 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.506 3.494 15 O -0.530 6.530 16 C -0.108 4.108 17 C -0.032 4.032 18 C -0.098 4.098 19 C -0.114 4.114 20 C 0.064 3.936 21 O -0.489 6.489 22 C 0.074 3.926 23 F -0.136 7.136 24 C -0.127 4.127 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.387 0.613 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.708 -8.852 -16.163 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.189 4.189 3 C 0.011 3.989 4 N -0.325 5.325 5 C 0.129 3.871 6 C -0.566 4.566 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.292 3.708 15 O -0.407 6.407 16 C -0.148 4.148 17 C -0.032 4.032 18 C -0.117 4.117 19 C -0.132 4.132 20 C 0.019 3.981 21 O -0.298 6.298 22 C 0.055 3.945 23 F -0.115 7.115 24 C -0.146 4.146 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.242 0.758 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.005 -8.645 -14.836 18.191 hybrid contribution 0.148 0.590 -0.205 0.642 sum 6.153 -8.055 -15.041 18.138 Atomic orbital electron populations 1.23828 0.95876 1.01792 1.00429 1.23426 0.96421 0.99006 1.00041 1.20604 0.93192 0.95382 0.89710 1.48233 1.10365 1.60222 1.13656 1.19272 0.95375 0.93745 0.78716 1.21382 1.40717 0.93306 1.01243 0.92517 1.24931 0.95038 0.98730 0.95326 1.69922 1.41928 1.36273 1.05159 0.86571 0.78823 0.84923 0.77175 1.20254 1.21172 1.20183 1.20115 0.82502 0.78986 0.89198 1.90721 1.52442 1.55738 1.41764 1.20833 0.92939 1.02735 0.98254 1.19252 0.94975 0.92410 0.96602 1.20988 0.91499 0.99677 0.99499 1.21242 0.97368 0.94815 0.99818 1.18389 0.83212 0.92506 1.04022 1.84908 1.22789 1.83305 1.38790 1.18002 0.93468 0.79547 1.03526 1.91479 1.94263 1.36330 1.89419 1.20901 0.94555 0.97293 1.01803 0.88787 0.88259 0.87811 0.89391 0.90719 0.94974 0.93912 0.92647 0.88273 0.87933 0.84816 0.84445 0.75783 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 14.32 29.01 0.42 -1.80 16 2 C -0.17 -2.24 9.76 -36.03 -0.35 -2.59 16 3 C 0.14 2.03 5.66 -5.19 -0.03 2.00 16 4 N -0.59 -11.97 2.44 -176.43 -0.43 -12.40 16 5 C 0.25 6.38 5.16 -5.20 -0.03 6.36 16 6 C -0.53 -14.72 9.39 -34.44 -0.32 -15.05 16 7 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 10 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.51 9.97 7.66 -10.98 -0.08 9.89 16 15 O -0.53 -13.12 15.61 5.55 0.09 -13.04 16 16 C -0.11 -1.44 4.38 -29.03 -0.13 -1.57 16 17 C -0.03 -0.44 4.37 -104.61 -0.46 -0.90 16 18 C -0.10 -1.28 9.69 -39.59 -0.38 -1.66 16 19 C -0.11 -1.39 9.98 -39.45 -0.39 -1.78 16 20 C 0.06 0.85 6.71 -39.18 -0.26 0.58 16 21 O -0.49 -5.72 13.37 -19.62 -0.26 -5.98 16 22 C 0.07 1.06 7.31 -39.30 -0.29 0.77 16 23 F -0.14 -2.00 17.11 2.25 0.04 -1.96 16 24 C -0.13 -1.76 9.67 -39.54 -0.38 -2.15 16 25 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 26 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 27 H 0.10 1.26 7.85 -52.49 -0.41 0.85 16 28 H 0.09 1.40 7.72 -51.93 -0.40 1.00 16 29 H 0.07 0.88 6.43 -51.93 -0.33 0.55 16 30 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.10 1.07 7.76 -51.93 -0.40 0.66 16 34 H 0.10 1.11 7.34 -51.93 -0.38 0.73 16 35 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.39 2.39 9.06 45.56 0.41 2.80 16 38 H 0.14 1.72 8.06 -52.48 -0.42 1.29 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -35.11 340.07 -6.49 -41.60 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -3.97 Total: 2.01 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.79 Total: -6.23 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.31 Total: -38.19 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.18 Total: -19.02 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.11 -6.49 -41.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451964748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.785 kcal (2) G-P(sol) polarization free energy of solvation -35.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds