Wall clock time and date at job start Tue Mar 31 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99700 * 2 1 4 4 N 1.46506 * 109.47106 * 125.00371 * 3 2 1 5 5 C 1.46499 * 119.99537 * 270.00004 * 4 3 2 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 3 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00096 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46927 * 59.99717 * 10 8 6 12 12 H 1.48496 * 109.47287 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47040 * 299.99940 * 10 8 6 14 14 C 1.34777 * 120.00264 * 89.99354 * 4 3 2 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 3 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 4 18 18 C 1.38264 * 119.93461 * 269.72057 * 17 16 14 19 19 C 1.38179 * 120.09375 * 179.77027 * 18 17 16 20 20 C 1.38655 * 119.96828 * 0.50833 * 19 18 17 21 21 O 1.35961 * 120.06527 * 179.72648 * 20 19 18 22 22 C 1.38908 * 119.87626 * 359.74529 * 20 19 18 23 23 F 1.35102 * 120.04855 * 179.97438 * 22 20 19 24 24 C 1.38250 * 119.93793 * 90.00078 * 17 16 14 25 25 H 1.07992 * 119.99585 * 180.02562 * 1 2 3 26 26 H 1.07995 * 119.99516 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00412 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47456 * 5.00330 * 3 2 1 29 29 H 1.09001 * 109.47250 * 244.99774 * 3 2 1 30 30 H 1.09001 * 109.47567 * 29.99407 * 5 4 3 31 31 H 1.09005 * 109.47076 * 149.99913 * 5 4 3 32 32 H 0.96991 * 119.99957 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 4 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 4 35 35 H 1.08002 * 119.95263 * 0.02562 * 18 17 16 36 36 H 1.07997 * 120.01636 * 180.25143 * 19 18 17 37 37 H 0.96703 * 113.99576 * 270.02356 * 21 20 19 38 38 H 1.08005 * 119.98588 * 359.95352 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3034 3.8371 1.6365 8 6 2.5194 4.0665 3.6086 9 7 1.9608 3.4656 4.6365 10 14 2.8725 5.8996 3.6772 11 1 2.1358 6.5867 2.5862 12 1 2.4317 6.4399 4.9883 13 1 4.3302 6.1294 3.5114 14 6 4.2498 0.8662 0.9824 15 8 5.0197 0.8880 1.9192 16 6 4.6991 0.3236 -0.3498 17 6 6.1352 -0.1226 -0.2520 18 6 7.1549 0.7667 -0.5366 19 6 8.4729 0.3624 -0.4433 20 6 8.7735 -0.9398 -0.0740 21 8 10.0695 -1.3413 0.0131 22 6 7.7479 -1.8337 0.2066 23 9 8.0367 -3.1035 0.5663 24 6 6.4303 -1.4220 0.1166 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 1.4888 1.6967 2.5459 31 1 3.0990 1.3603 3.2260 32 1 1.7319 3.9742 5.4300 33 1 4.0730 -0.5248 -0.6265 34 1 4.6113 1.1022 -1.1075 35 1 6.9210 1.7799 -0.8282 36 1 9.2685 1.0592 -0.6619 37 1 10.4256 -1.7021 -0.8105 38 1 5.6319 -2.1158 0.3347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451964748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:42 Heat of formation + Delta-G solvation = -101.055488 kcal Electronic energy + Delta-G solvation = -22879.619454 eV Core-core repulsion = 19215.476520 eV Total energy + Delta-G solvation = -3664.142934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.94993 -41.13426 -40.15561 -37.98880 -37.10274 -35.12156 -33.63107 -33.05443 -31.65757 -29.87303 -27.90889 -26.79809 -24.82527 -23.99668 -22.81849 -21.11710 -19.92448 -19.62233 -18.61794 -18.07757 -17.82630 -17.79890 -17.13101 -16.98540 -16.31351 -16.12080 -16.08146 -15.48496 -15.11446 -14.93801 -14.53774 -14.40411 -14.31568 -14.09580 -13.52460 -13.32227 -12.99841 -12.90155 -12.80770 -12.69757 -12.61636 -12.48054 -12.19889 -12.14100 -11.66865 -11.62087 -10.65089 -10.62706 -10.27497 -9.93081 -9.52128 -9.42778 -8.20444 -6.35187 0.00221 0.14801 1.36294 1.38268 1.42057 1.49159 1.87358 2.27430 2.39841 2.70220 2.95534 3.09585 3.30039 3.59437 3.77102 3.86841 4.13683 4.19853 4.22361 4.31844 4.38417 4.53363 4.59754 4.80323 4.90669 4.94592 5.01202 5.05474 5.09947 5.16064 5.25986 5.45683 5.54698 5.74748 5.75563 5.79217 5.99715 6.08515 6.71239 6.72372 6.81894 7.30792 7.51882 8.86580 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.004270 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.339615 B = 6555.386128 C = 7737.695642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.183 4.183 3 C 0.131 3.869 4 N -0.598 5.598 5 C 0.265 3.735 6 C -0.540 4.540 7 H 0.058 0.942 8 C 0.007 3.993 9 N -0.931 5.931 10 Si 0.966 3.034 11 H -0.258 1.258 12 H -0.282 1.282 13 H -0.277 1.277 14 C 0.498 3.502 15 O -0.592 6.592 16 C -0.091 4.091 17 C -0.050 4.050 18 C -0.102 4.102 19 C -0.115 4.115 20 C 0.066 3.934 21 O -0.500 6.500 22 C 0.049 3.951 23 F -0.145 7.145 24 C -0.134 4.134 25 H 0.114 0.886 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.019 0.981 31 H -0.008 1.008 32 H 0.266 0.734 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.151 0.849 36 H 0.163 0.837 37 H 0.411 0.589 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.914 -8.091 -18.618 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.202 4.202 3 C 0.009 3.991 4 N -0.329 5.329 5 C 0.143 3.857 6 C -0.579 4.579 7 H 0.076 0.924 8 C -0.192 4.192 9 N -0.570 5.570 10 Si 0.791 3.209 11 H -0.182 1.182 12 H -0.207 1.207 13 H -0.203 1.203 14 C 0.288 3.712 15 O -0.473 6.473 16 C -0.130 4.130 17 C -0.050 4.050 18 C -0.120 4.120 19 C -0.133 4.133 20 C 0.020 3.980 21 O -0.313 6.313 22 C 0.030 3.970 23 F -0.124 7.124 24 C -0.153 4.153 25 H 0.132 0.868 26 H 0.115 0.885 27 H 0.135 0.865 28 H 0.093 0.907 29 H 0.134 0.866 30 H 0.037 0.963 31 H 0.011 0.989 32 H 0.075 0.925 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.168 0.832 36 H 0.180 0.820 37 H 0.270 0.730 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.193 -7.906 -17.369 20.064 hybrid contribution 0.101 0.294 0.555 0.636 sum 6.293 -7.612 -16.814 19.501 Atomic orbital electron populations 1.24041 0.95770 1.02707 0.98694 1.23381 0.96726 0.98540 1.01522 1.20885 0.92801 0.96133 0.89264 1.48207 1.11783 1.59856 1.13010 1.18655 0.93657 0.92719 0.80654 1.21705 1.40424 0.94384 1.01395 0.92395 1.25870 0.94721 1.03727 0.94906 1.70056 1.42994 1.38188 1.05799 0.85488 0.78521 0.79103 0.77836 1.18219 1.20700 1.20284 1.21214 0.81399 0.77693 0.90926 1.90688 1.54016 1.58129 1.44443 1.20805 0.93003 1.04579 0.94580 1.19389 0.95506 0.92567 0.97573 1.21299 0.91677 1.00241 0.98774 1.21517 0.97915 0.94745 0.99171 1.18544 0.83508 0.92763 1.03188 1.84838 1.22065 1.83498 1.40866 1.18266 0.94183 0.79652 1.04946 1.91448 1.94337 1.36865 1.89707 1.21071 0.94771 0.97808 1.01635 0.86805 0.88499 0.86453 0.90666 0.86639 0.96331 0.98940 0.92535 0.85110 0.84505 0.83169 0.81981 0.72976 0.83865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 14.32 67.77 0.97 -2.95 16 2 C -0.18 -4.44 9.76 25.64 0.25 -4.19 16 3 C 0.13 3.71 5.66 85.63 0.48 4.19 16 4 N -0.60 -24.07 2.44 -830.49 -2.03 -26.10 16 5 C 0.26 14.15 5.16 85.63 0.44 14.59 16 6 C -0.54 -30.69 9.39 25.60 0.24 -30.45 16 7 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 8 C 0.01 0.38 5.46 84.66 0.46 0.84 16 9 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 10 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 11 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 C 0.50 19.44 7.66 87.66 0.67 20.11 16 15 O -0.59 -30.13 15.61 -3.04 -0.05 -30.18 16 16 C -0.09 -2.18 4.38 29.10 0.13 -2.05 16 17 C -0.05 -1.30 4.37 -19.86 -0.09 -1.39 16 18 C -0.10 -2.43 9.69 22.26 0.22 -2.21 16 19 C -0.12 -2.58 9.98 22.36 0.22 -2.36 16 20 C 0.07 1.65 6.71 22.53 0.15 1.80 16 21 O -0.50 -10.96 13.37 -93.11 -1.24 -12.20 16 22 C 0.05 1.38 7.31 22.45 0.16 1.55 16 23 F -0.14 -4.26 17.11 44.97 0.77 -3.49 16 24 C -0.13 -3.64 9.67 22.29 0.22 -3.42 16 25 H 0.11 2.11 8.06 -2.91 -0.02 2.08 16 26 H 0.10 2.21 7.84 -2.91 -0.02 2.19 16 27 H 0.12 2.54 7.85 -2.91 -0.02 2.52 16 28 H 0.07 2.32 7.72 -2.39 -0.02 2.30 16 29 H 0.12 2.29 6.43 -2.39 -0.02 2.28 16 30 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 31 H -0.01 -0.47 7.42 -2.38 -0.02 -0.49 16 32 H 0.27 15.24 8.31 -92.72 -0.77 14.47 16 33 H 0.13 2.34 7.76 -2.38 -0.02 2.32 16 34 H 0.14 2.37 7.34 -2.39 -0.02 2.35 16 35 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 37 H 0.41 4.32 9.06 -74.06 -0.67 3.65 16 38 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -79.73 340.07 4.70 -75.02 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.41 Total: 12.68 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 4.53 Total: -5.95 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -1.74 Total: -82.44 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -1.29 Total: -42.38 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.77 Total: -3.49 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -79.73 4.70 -75.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451964748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.034 kcal (2) G-P(sol) polarization free energy of solvation -79.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds