Wall clock time and date at job start Tue Mar 31 2020 08:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81403 * 103.00310 * 2 1 4 4 H 1.09001 * 109.46516 * 55.00145 * 3 2 1 5 5 C 1.52997 * 109.47019 * 294.99937 * 3 2 1 6 6 C 1.52994 * 109.47170 * 174.99838 * 3 2 1 7 7 C 1.53008 * 109.47276 * 294.99985 * 6 3 2 8 8 C 1.50695 * 109.46865 * 179.97438 * 7 6 3 9 9 O 1.21284 * 120.00335 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99528 * 180.27620 * 8 7 6 11 11 C 1.39942 * 119.99813 * 174.61945 * 10 8 7 12 12 C 1.39296 * 119.94759 * 145.78507 * 11 10 8 13 13 C 1.38478 * 120.42889 * 180.02562 * 12 11 10 14 14 C 1.37681 * 120.32398 * 359.97251 * 13 12 11 15 15 C 1.40745 * 119.88497 * 0.02562 * 14 13 12 16 16 C 1.41413 * 120.21066 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99947 * 205.18320 * 16 15 14 18 18 C 1.39928 * 120.00187 * 25.18381 * 16 15 14 19 19 N 1.30831 * 119.99560 * 16.78670 * 18 16 15 20 20 Si 1.86790 * 120.00238 * 196.79113 * 18 16 15 21 21 H 1.48499 * 109.47152 * 59.99862 * 20 18 16 22 22 H 1.48502 * 109.47196 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46972 * 299.99628 * 20 18 16 24 24 C 1.38242 * 119.94652 * 325.50862 * 11 10 8 25 25 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46932 * 300.00370 * 1 2 3 27 27 H 1.09005 * 109.46763 * 59.99403 * 1 2 3 28 28 H 1.09004 * 109.46954 * 60.00013 * 5 3 2 29 29 H 1.08998 * 109.47184 * 179.97438 * 5 3 2 30 30 H 1.08996 * 109.47409 * 299.99934 * 5 3 2 31 31 H 1.08993 * 109.47310 * 175.00062 * 6 3 2 32 32 H 1.09002 * 109.47063 * 54.99973 * 6 3 2 33 33 H 1.09000 * 109.46748 * 60.00192 * 7 6 3 34 34 H 1.08993 * 109.47221 * 300.00158 * 7 6 3 35 35 H 0.97001 * 120.00390 * 354.61486 * 10 8 7 36 36 H 1.07998 * 119.78561 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.84134 * 179.97438 * 13 12 11 38 38 H 1.08003 * 120.06030 * 179.97438 * 14 13 12 39 39 H 0.97001 * 119.99969 * 179.97438 * 19 18 16 40 40 H 1.07993 * 120.16336 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8419 5 6 1.7429 2.4016 -1.3073 6 6 3.7370 1.9411 0.1258 7 6 4.1989 1.4190 1.4878 8 6 5.6911 1.5895 1.6113 9 8 6.3229 2.0806 0.7000 10 7 6.3242 1.1915 2.7326 11 6 7.7207 1.2451 2.8041 12 6 8.3442 1.5412 4.0141 13 6 9.7255 1.5973 4.0960 14 6 10.4981 1.3603 2.9814 15 6 9.8822 1.0600 1.7520 16 6 10.6692 0.8159 0.6027 17 1 10.2563 0.9863 -0.3806 18 6 11.9827 0.3535 0.7394 19 7 12.3798 -0.1623 1.8744 20 14 13.1693 0.4727 -0.6982 21 1 13.3290 1.8957 -1.0915 22 1 14.4881 -0.0810 -0.2988 23 1 12.6343 -0.3014 -1.8470 24 6 8.4795 0.9985 1.6752 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 0.6636 2.2779 -1.3969 29 1 1.9877 3.4637 -1.3072 30 1 2.2355 1.9150 -2.1491 31 1 3.9903 2.9975 0.0367 32 1 4.2339 1.3803 -0.6659 33 1 3.9456 0.3626 1.5769 34 1 3.7020 1.9798 2.2794 35 1 5.8118 0.8680 3.4901 36 1 7.7465 1.7290 4.8937 37 1 10.1989 1.8282 5.0388 38 1 11.5750 1.4057 3.0500 39 1 13.2903 -0.4832 1.9691 40 1 7.9972 0.7649 0.7376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456753201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:19 Heat of formation + Delta-G solvation = -54.339568 kcal Electronic energy + Delta-G solvation = -20361.265870 eV Core-core repulsion = 17265.361866 eV Total energy + Delta-G solvation = -3095.904003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24108 -39.06724 -36.61539 -36.08890 -34.82169 -32.05606 -31.75954 -29.98145 -29.31577 -27.27547 -25.86420 -23.28706 -22.74060 -22.23840 -21.02431 -19.51221 -18.09510 -17.63809 -17.36116 -16.87871 -16.56888 -16.40258 -15.75495 -15.39494 -15.09819 -14.93065 -14.66264 -14.43912 -14.09892 -13.89306 -13.60033 -13.51092 -13.40863 -13.02351 -12.92839 -12.77458 -12.58836 -12.36703 -12.19422 -12.07833 -11.98084 -11.93897 -11.53236 -11.15855 -10.87439 -10.65940 -10.61725 -9.40695 -8.75775 -8.64470 -8.60795 -6.38310 0.77919 0.87259 0.99814 1.35020 1.46413 1.49821 1.70994 1.84225 2.19824 2.28016 2.72863 3.60537 3.70671 3.73221 4.03016 4.13587 4.34744 4.37066 4.40804 4.46022 4.49169 4.62869 4.66042 4.78847 4.80692 4.96538 5.02285 5.05277 5.08753 5.11986 5.18725 5.25727 5.27626 5.32732 5.76248 5.86452 6.07025 6.10373 6.34348 6.66251 6.68347 6.92740 7.00404 7.36666 8.32354 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021077 B = 0.003129 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.164250 B = 8947.694852 C = 9737.316823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.317 6.317 3 C -0.039 4.039 4 H 0.110 0.890 5 C -0.147 4.147 6 C -0.083 4.083 7 C -0.124 4.124 8 C 0.498 3.502 9 O -0.571 6.571 10 N -0.661 5.661 11 C 0.158 3.842 12 C -0.252 4.252 13 C -0.091 4.091 14 C -0.200 4.200 15 C 0.089 3.911 16 C -0.505 4.505 17 H 0.062 0.938 18 C 0.038 3.962 19 N -0.822 5.822 20 Si 0.982 3.018 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.263 1.263 24 C -0.238 4.238 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.422 0.578 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.290 0.710 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.545 2.199 0.660 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.092 6.092 3 C -0.167 4.167 4 H 0.128 0.872 5 C -0.206 4.206 6 C -0.122 4.122 7 C -0.163 4.163 8 C 0.288 3.712 9 O -0.449 6.449 10 N -0.307 5.307 11 C 0.064 3.936 12 C -0.273 4.273 13 C -0.110 4.110 14 C -0.220 4.220 15 C 0.086 3.914 16 C -0.534 4.534 17 H 0.080 0.920 18 C -0.177 4.177 19 N -0.448 5.448 20 Si 0.802 3.198 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.187 1.187 24 C -0.260 4.260 25 H 0.124 0.876 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.130 0.870 34 H 0.147 0.853 35 H 0.260 0.740 36 H 0.151 0.849 37 H 0.142 0.858 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.302 1.528 0.130 20.360 hybrid contribution -0.113 0.628 -0.400 0.753 sum -20.415 2.157 -0.270 20.530 Atomic orbital electron populations 1.23433 0.91340 1.07168 1.05901 1.87336 1.10606 1.13229 1.98006 1.23142 0.98154 0.92638 1.02804 0.87188 1.22067 1.01824 1.01362 0.95323 1.21134 0.92661 1.02291 0.96107 1.21745 0.88171 1.05627 1.00800 1.21710 0.91904 0.76358 0.81249 1.90736 1.69536 1.44411 1.40256 1.43463 1.04691 1.64309 1.18226 1.17558 0.82453 0.98922 0.94633 1.20493 0.94530 1.15740 0.96525 1.20849 0.93624 0.98921 0.97602 1.21313 0.99351 1.07690 0.93614 1.17834 0.91321 0.88272 0.93948 1.19718 0.98233 1.41762 0.93723 0.91998 1.26702 0.99666 0.91299 1.00039 1.69853 1.19516 1.27928 1.27467 0.85273 0.76890 0.79752 0.77880 1.18674 1.18283 1.18738 1.20926 0.93710 1.13946 0.97432 0.87602 0.89210 0.89605 0.90903 0.90727 0.92572 0.90086 0.92980 0.87000 0.85252 0.74030 0.84932 0.85835 0.87752 0.89950 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.45 113.37 1.19 0.01 16 2 S -0.32 -5.91 20.60 -56.49 -1.16 -7.07 16 3 C -0.04 -0.63 2.82 30.59 0.09 -0.55 16 4 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 5 C -0.15 -2.10 9.10 71.98 0.66 -1.44 16 6 C -0.08 -1.90 3.97 30.60 0.12 -1.77 16 7 C -0.12 -2.78 5.53 29.85 0.17 -2.61 16 8 C 0.50 17.52 7.56 87.66 0.66 18.18 16 9 O -0.57 -26.48 13.74 -3.04 -0.04 -26.52 16 10 N -0.66 -23.04 5.34 -303.65 -1.62 -24.66 16 11 C 0.16 7.27 6.25 38.10 0.24 7.50 16 12 C -0.25 -10.78 9.97 22.58 0.23 -10.55 16 13 C -0.09 -4.25 10.01 22.20 0.22 -4.03 16 14 C -0.20 -11.01 8.69 22.75 0.20 -10.82 16 15 C 0.09 5.26 5.57 -21.30 -0.12 5.15 16 16 C -0.50 -30.05 9.05 23.46 0.21 -29.84 16 17 H 0.06 3.70 7.90 -2.91 -0.02 3.68 16 18 C 0.04 2.04 5.16 85.25 0.44 2.48 16 19 N -0.82 -44.72 10.94 21.82 0.24 -44.48 16 20 Si 0.98 40.88 29.59 68.60 2.03 42.91 16 21 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 22 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 24 C -0.24 -13.27 8.39 22.85 0.19 -13.08 16 25 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 0.76 7.14 -2.39 -0.02 0.74 16 28 H 0.07 0.78 6.92 -2.39 -0.02 0.77 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.92 8.10 -2.39 -0.02 1.90 16 32 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 33 H 0.11 2.38 7.13 -2.39 -0.02 2.36 16 34 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.42 10.53 8.82 -92.71 -0.82 9.71 16 36 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 38 H 0.10 5.94 6.17 -2.91 -0.02 5.92 16 39 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 40 H 0.08 4.80 6.48 -2.91 -0.02 4.78 16 Total: -1.00 -73.78 344.07 4.15 -69.63 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.22 Total: 31.55 kcal Atomic # 6 Polarization: -45.85 SS G_CDS: 4.48 Total: -41.37 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.38 Total: -69.14 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.04 Total: -26.52 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 16 Polarization: -5.91 SS G_CDS: -1.16 Total: -7.07 kcal Total: -73.78 4.15 -69.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456753201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.290 kcal (2) G-P(sol) polarization free energy of solvation -73.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds