Wall clock time and date at job start Tue Mar 31 2020 07:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 120.00024 * 2 1 4 4 O 1.42904 * 109.47324 * 135.00362 * 3 2 1 5 5 C 1.42893 * 114.00326 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46931 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00254 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99793 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00230 * 4.74382 * 8 6 5 10 10 C 1.50702 * 109.47016 * 270.00036 * 9 8 6 11 11 H 1.08007 * 119.99720 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99915 * 179.97438 * 10 9 8 13 13 N 1.31506 * 120.00262 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99764 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47334 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47050 * 120.00421 * 14 12 10 17 17 H 1.48503 * 109.47312 * 240.00004 * 14 12 10 18 18 C 1.40032 * 120.00268 * 184.74048 * 8 6 5 19 19 C 1.38852 * 120.04251 * 67.63927 * 18 8 6 20 20 C 1.38112 * 119.95014 * 179.72617 * 19 18 8 21 21 C 1.38478 * 120.04551 * 0.55174 * 20 19 18 22 22 F 1.35103 * 119.94991 * 179.70308 * 21 20 19 23 23 C 1.38472 * 120.08922 * 359.72412 * 21 20 19 24 24 C 1.38111 * 120.04516 * 0.02562 * 23 21 20 25 25 H 1.08000 * 120.00155 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00475 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00155 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47253 * 15.00497 * 3 2 1 29 29 H 1.08999 * 109.47631 * 255.00267 * 3 2 1 30 30 H 1.08997 * 109.47169 * 59.99737 * 5 4 3 31 31 H 1.09002 * 109.47067 * 299.99821 * 5 4 3 32 32 H 1.09004 * 109.46786 * 29.99480 * 9 8 6 33 33 H 1.08996 * 109.47292 * 149.99871 * 9 8 6 34 34 H 0.97001 * 120.00144 * 180.02562 * 13 12 10 35 35 H 1.07994 * 120.02241 * 0.02562 * 19 18 8 36 36 H 1.08001 * 119.97634 * 180.25442 * 20 19 18 37 37 H 1.08007 * 119.97327 * 179.97438 * 23 21 20 38 38 H 1.08004 * 120.01806 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4352 1.0328 6 6 4.9933 2.2570 2.0628 7 8 5.0885 1.2107 2.6688 8 7 5.8585 3.2603 2.3104 9 6 5.6813 4.5588 1.6555 10 6 6.4337 4.5697 0.3498 11 1 6.9887 3.6968 0.0391 12 6 6.4135 5.6939 -0.4481 13 7 5.7381 6.7569 -0.0695 14 14 7.3467 5.7076 -2.0662 15 1 8.0220 4.3993 -2.2593 16 1 6.3973 5.9450 -3.1832 17 1 8.3633 6.7900 -2.0422 18 6 6.9267 3.0618 3.1938 19 6 7.9558 2.1929 2.8560 20 6 9.0113 2.0028 3.7262 21 6 9.0381 2.6693 4.9397 22 9 10.0686 2.4773 5.7921 23 6 8.0100 3.5319 5.2808 24 6 6.9552 3.7287 4.4112 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3855 2.1161 0.2661 29 1 2.4754 1.4868 -0.9926 30 1 3.2678 3.2693 1.3205 31 1 4.3580 2.6408 0.0617 32 1 4.6214 4.7282 1.4655 33 1 6.0650 5.3475 2.3026 34 1 5.7236 7.5477 -0.6311 35 1 7.9331 1.6698 1.9114 36 1 9.8139 1.3301 3.4621 37 1 8.0326 4.0505 6.2280 38 1 6.1533 4.4013 4.6779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558138184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:07 Heat of formation + Delta-G solvation = -73.475773 kcal Electronic energy + Delta-G solvation = -22888.668427 eV Core-core repulsion = 19225.721439 eV Total energy + Delta-G solvation = -3662.946987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.64163 -39.99324 -38.27151 -37.19619 -35.06518 -33.77512 -32.73784 -30.88241 -29.83763 -27.81268 -26.98472 -25.31317 -23.37608 -22.56971 -22.15387 -20.08416 -19.09391 -17.45382 -17.06752 -16.96493 -16.15955 -16.01021 -15.95274 -15.74747 -15.31754 -14.95138 -14.42539 -14.27512 -14.03484 -13.48428 -13.29428 -13.09264 -12.82129 -12.53665 -12.36563 -12.02525 -11.92823 -11.81772 -11.59287 -11.14642 -10.95405 -10.89548 -10.82781 -10.32661 -9.94528 -9.81199 -9.28990 -9.20191 -8.82475 -8.69940 -8.62074 -7.76068 -6.32341 -4.40686 1.40828 1.53591 2.11713 3.10726 3.13765 3.23527 3.26710 3.32340 3.89264 4.20077 4.30625 4.52552 4.98317 5.01823 5.03427 5.09440 5.12167 5.29745 5.45140 5.53092 5.54283 5.62388 5.66793 5.81328 5.83237 5.88610 6.15396 6.36836 6.44189 6.51436 6.60524 6.61037 6.73178 6.95129 7.05866 7.24860 7.52524 7.62698 7.86180 8.00278 8.62461 8.80108 9.28010 10.74544 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.009209 B = 0.005712 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.905137 B = 4900.831132 C = 7265.183702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.142 4.142 3 C 0.085 3.915 4 O -0.367 6.367 5 C 0.051 3.949 6 C 0.525 3.475 7 O -0.538 6.538 8 N -0.562 5.562 9 C 0.236 3.764 10 C -0.543 4.543 11 H 0.064 0.936 12 C 0.068 3.932 13 N -0.889 5.889 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.169 3.831 19 C -0.079 4.079 20 C -0.144 4.144 21 C 0.080 3.920 22 F -0.147 7.147 23 C -0.144 4.144 24 C -0.095 4.095 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.267 0.733 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 -6.010 2.910 7.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.160 4.160 3 C 0.009 3.991 4 O -0.286 6.286 5 C -0.028 4.028 6 C 0.313 3.687 7 O -0.414 6.414 8 N -0.292 5.292 9 C 0.118 3.882 10 C -0.581 4.581 11 H 0.082 0.918 12 C -0.136 4.136 13 N -0.527 5.527 14 Si 0.724 3.276 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.207 1.207 18 C 0.078 3.922 19 C -0.098 4.098 20 C -0.163 4.163 21 C 0.061 3.939 22 F -0.125 7.125 23 C -0.163 4.163 24 C -0.115 4.115 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.134 0.866 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.052 -6.525 3.286 7.918 hybrid contribution 0.671 0.581 -1.091 1.406 sum -2.382 -5.944 2.196 6.769 Atomic orbital electron populations 1.23788 0.95534 1.02074 1.01140 1.22769 0.95575 0.98378 0.99259 1.21572 0.89005 0.95678 0.92848 1.87948 1.44319 1.36038 1.60277 1.22240 0.92808 0.87809 0.99928 1.20166 0.82492 0.83096 0.82911 1.90668 1.73338 1.27318 1.50110 1.45888 1.24816 1.15434 1.43012 1.19651 0.98254 0.77519 0.92800 1.21475 1.32227 1.00411 1.04010 0.91772 1.24922 0.95175 0.95076 0.98414 1.69914 1.40787 1.03806 1.38156 0.86445 0.79780 0.78423 0.82932 1.19538 1.20713 1.20691 1.17561 0.88758 0.96401 0.89491 1.21118 0.91742 0.97747 0.99227 1.20928 1.00225 1.01828 0.93319 1.17628 0.86691 1.00239 0.89378 1.91455 1.57070 1.94267 1.69748 1.20884 0.94150 1.00133 1.01181 1.21075 0.98275 1.00131 0.92034 0.88444 0.87994 0.86593 0.92648 0.91971 0.90179 0.88525 0.93919 0.93907 0.92357 0.85106 0.84875 0.84807 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 14.31 29.02 0.42 -1.49 16 2 C -0.14 -1.73 9.89 -36.03 -0.36 -2.09 16 3 C 0.09 1.17 6.35 36.00 0.23 1.40 16 4 O -0.37 -6.58 9.86 -55.14 -0.54 -7.13 16 5 C 0.05 0.93 5.08 36.01 0.18 1.11 16 6 C 0.52 10.92 7.60 -10.98 -0.08 10.84 16 7 O -0.54 -12.51 16.25 -14.36 -0.23 -12.74 16 8 N -0.56 -11.54 2.51 -114.71 -0.29 -11.83 16 9 C 0.24 5.25 4.88 -5.19 -0.03 5.23 16 10 C -0.54 -13.27 9.16 -34.44 -0.32 -13.59 16 11 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 12 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -23.23 13.29 55.43 0.74 -22.49 16 14 Si 0.90 19.65 29.54 -169.99 -5.02 14.63 16 15 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 C 0.17 3.28 4.76 -83.66 -0.40 2.88 16 19 C -0.08 -1.43 9.53 -39.40 -0.38 -1.81 16 20 C -0.14 -2.28 10.02 -39.54 -0.40 -2.68 16 21 C 0.08 1.26 7.30 -39.41 -0.29 0.97 16 22 F -0.15 -2.23 17.27 2.25 0.04 -2.19 16 23 C -0.14 -2.19 10.02 -39.54 -0.40 -2.58 16 24 C -0.10 -1.62 9.69 -39.40 -0.38 -2.00 16 25 H 0.10 0.89 7.90 -52.49 -0.41 0.48 16 26 H 0.10 0.86 8.06 -52.49 -0.42 0.43 16 27 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.06 0.69 7.86 -51.93 -0.41 0.28 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.34 7.26 -51.93 -0.38 0.96 16 31 H 0.10 1.75 7.91 -51.93 -0.41 1.34 16 32 H 0.04 0.95 6.47 -51.93 -0.34 0.61 16 33 H 0.04 1.01 7.86 -51.93 -0.41 0.60 16 34 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 35 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 36 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 38 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -28.80 341.95 -7.30 -36.10 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -4.86 Total: 2.70 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.29 Total: -2.21 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.45 Total: -34.32 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.78 Total: -19.87 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.80 -7.30 -36.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558138184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.375 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds