Wall clock time and date at job start Tue Mar 31 2020 07:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 120.00024 * 2 1 4 4 O 1.42904 * 109.47324 * 135.00362 * 3 2 1 5 5 C 1.42893 * 114.00326 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46931 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00254 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99793 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00230 * 4.74382 * 8 6 5 10 10 C 1.50702 * 109.47016 * 270.00036 * 9 8 6 11 11 H 1.08007 * 119.99720 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99915 * 179.97438 * 10 9 8 13 13 N 1.31506 * 120.00262 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99764 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47334 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47050 * 120.00421 * 14 12 10 17 17 H 1.48503 * 109.47312 * 240.00004 * 14 12 10 18 18 C 1.40032 * 120.00268 * 184.74048 * 8 6 5 19 19 C 1.38852 * 120.04251 * 67.63927 * 18 8 6 20 20 C 1.38112 * 119.95014 * 179.72617 * 19 18 8 21 21 C 1.38478 * 120.04551 * 0.55174 * 20 19 18 22 22 F 1.35103 * 119.94991 * 179.70308 * 21 20 19 23 23 C 1.38472 * 120.08922 * 359.72412 * 21 20 19 24 24 C 1.38111 * 120.04516 * 0.02562 * 23 21 20 25 25 H 1.08000 * 120.00155 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00475 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00155 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47253 * 15.00497 * 3 2 1 29 29 H 1.08999 * 109.47631 * 255.00267 * 3 2 1 30 30 H 1.08997 * 109.47169 * 59.99737 * 5 4 3 31 31 H 1.09002 * 109.47067 * 299.99821 * 5 4 3 32 32 H 1.09004 * 109.46786 * 29.99480 * 9 8 6 33 33 H 1.08996 * 109.47292 * 149.99871 * 9 8 6 34 34 H 0.97001 * 120.00144 * 180.02562 * 13 12 10 35 35 H 1.07994 * 120.02241 * 0.02562 * 19 18 8 36 36 H 1.08001 * 119.97634 * 180.25442 * 20 19 18 37 37 H 1.08007 * 119.97327 * 179.97438 * 23 21 20 38 38 H 1.08004 * 120.01806 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4352 1.0328 6 6 4.9933 2.2570 2.0628 7 8 5.0885 1.2107 2.6688 8 7 5.8585 3.2603 2.3104 9 6 5.6813 4.5588 1.6555 10 6 6.4337 4.5697 0.3498 11 1 6.9887 3.6968 0.0391 12 6 6.4135 5.6939 -0.4481 13 7 5.7381 6.7569 -0.0695 14 14 7.3467 5.7076 -2.0662 15 1 8.0220 4.3993 -2.2593 16 1 6.3973 5.9450 -3.1832 17 1 8.3633 6.7900 -2.0422 18 6 6.9267 3.0618 3.1938 19 6 7.9558 2.1929 2.8560 20 6 9.0113 2.0028 3.7262 21 6 9.0381 2.6693 4.9397 22 9 10.0686 2.4773 5.7921 23 6 8.0100 3.5319 5.2808 24 6 6.9552 3.7287 4.4112 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3855 2.1161 0.2661 29 1 2.4754 1.4868 -0.9926 30 1 3.2678 3.2693 1.3205 31 1 4.3580 2.6408 0.0617 32 1 4.6214 4.7282 1.4655 33 1 6.0650 5.3475 2.3026 34 1 5.7236 7.5477 -0.6311 35 1 7.9331 1.6698 1.9114 36 1 9.8139 1.3301 3.4621 37 1 8.0326 4.0505 6.2280 38 1 6.1533 4.4013 4.6779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558138184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:06 Heat of formation + Delta-G solvation = -87.282706 kcal Electronic energy + Delta-G solvation = -22889.267140 eV Core-core repulsion = 19225.721439 eV Total energy + Delta-G solvation = -3663.545701 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.88354 -41.52600 -39.62877 -38.54400 -36.74104 -34.76864 -34.58904 -32.18203 -31.27686 -29.41068 -28.52295 -26.45635 -25.11350 -23.97318 -23.54300 -21.11105 -20.48023 -18.85189 -18.71912 -18.46987 -17.75926 -17.42676 -17.26588 -17.06124 -16.55957 -16.45668 -15.93264 -15.64047 -15.36081 -14.83774 -14.55944 -14.40057 -14.25397 -14.01902 -13.83505 -13.52487 -13.26534 -13.17919 -13.10258 -12.86083 -12.65405 -12.18306 -12.14911 -11.87614 -11.73962 -11.01187 -10.90204 -10.59520 -10.26090 -10.15668 -10.11715 -9.27533 -8.23745 -6.37745 0.05629 0.23612 1.20556 1.39955 1.44020 1.50152 1.55562 1.87691 2.38534 2.55523 2.98586 3.08052 3.24016 3.68029 3.77355 3.89519 4.10022 4.17399 4.19035 4.22759 4.33010 4.39124 4.43664 4.48914 4.62255 4.88433 4.92493 4.98896 5.06884 5.10817 5.11932 5.40514 5.58215 5.65815 5.69036 5.71351 5.93384 5.98684 6.13524 6.34775 6.72465 7.15588 7.34693 8.82329 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.009209 B = 0.005712 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.905137 B = 4900.831132 C = 7265.183702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.173 4.173 3 C 0.079 3.921 4 O -0.390 6.390 5 C 0.060 3.940 6 C 0.519 3.481 7 O -0.567 6.567 8 N -0.558 5.558 9 C 0.250 3.750 10 C -0.548 4.548 11 H 0.054 0.946 12 C 0.029 3.971 13 N -0.916 5.916 14 Si 0.952 3.048 15 H -0.272 1.272 16 H -0.274 1.274 17 H -0.281 1.281 18 C 0.132 3.868 19 C -0.096 4.096 20 C -0.139 4.139 21 C 0.081 3.919 22 F -0.140 7.140 23 C -0.134 4.134 24 C -0.102 4.102 25 H 0.109 0.891 26 H 0.122 0.878 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.043 0.957 33 H 0.029 0.971 34 H 0.269 0.731 35 H 0.121 0.879 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.173 -6.010 3.047 7.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.192 4.192 3 C 0.003 3.997 4 O -0.309 6.309 5 C -0.019 4.019 6 C 0.309 3.691 7 O -0.447 6.447 8 N -0.287 5.287 9 C 0.131 3.869 10 C -0.586 4.586 11 H 0.072 0.928 12 C -0.173 4.173 13 N -0.554 5.554 14 Si 0.778 3.222 15 H -0.196 1.196 16 H -0.200 1.200 17 H -0.207 1.207 18 C 0.041 3.959 19 C -0.116 4.116 20 C -0.158 4.158 21 C 0.061 3.939 22 F -0.119 7.119 23 C -0.153 4.153 24 C -0.122 4.122 25 H 0.128 0.872 26 H 0.140 0.860 27 H 0.129 0.871 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.176 0.824 37 H 0.184 0.816 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.142 -6.525 3.424 8.011 hybrid contribution 0.688 0.545 -1.067 1.381 sum -2.454 -5.980 2.357 6.880 Atomic orbital electron populations 1.24064 0.94718 1.03634 0.97560 1.22732 0.96385 0.97473 1.02569 1.21830 0.88332 0.97222 0.92292 1.87927 1.45396 1.35928 1.61690 1.22126 0.92474 0.88568 0.98776 1.20643 0.82818 0.82628 0.82993 1.90633 1.74243 1.28327 1.51464 1.45799 1.25168 1.14684 1.43037 1.19355 0.97750 0.77983 0.91823 1.21622 1.32096 1.00039 1.04853 0.92759 1.25543 0.95867 0.94804 1.01038 1.69985 1.41875 1.04295 1.39285 0.85587 0.78688 0.78084 0.79846 1.19641 1.19979 1.20678 1.17965 0.89116 0.98234 0.90576 1.21141 0.92599 0.98210 0.99661 1.21141 0.99975 1.01756 0.92934 1.17720 0.86864 0.99998 0.89288 1.91477 1.56760 1.94187 1.69447 1.21196 0.92883 0.99342 1.01844 1.21240 0.99297 1.00082 0.91567 0.87237 0.85975 0.87143 0.91281 0.91426 0.88811 0.88839 0.93917 0.95252 0.92145 0.86062 0.82390 0.81553 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 14.31 67.79 0.97 -1.98 16 2 C -0.17 -4.11 9.89 25.65 0.25 -3.86 16 3 C 0.08 2.14 6.35 71.23 0.45 2.59 16 4 O -0.39 -14.15 9.86 -129.94 -1.28 -15.43 16 5 C 0.06 2.20 5.08 71.24 0.36 2.56 16 6 C 0.52 22.11 7.60 87.66 0.67 22.78 16 7 O -0.57 -27.09 16.25 15.99 0.26 -26.83 16 8 N -0.56 -23.38 2.51 -635.23 -1.59 -24.97 16 9 C 0.25 11.29 4.88 85.63 0.42 11.71 16 10 C -0.55 -27.00 9.16 25.60 0.23 -26.77 16 11 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 12 C 0.03 1.43 5.46 84.65 0.46 1.89 16 13 N -0.92 -47.71 13.29 21.44 0.28 -47.42 16 14 Si 0.95 40.05 29.54 68.60 2.03 42.07 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 18 C 0.13 5.16 4.76 38.12 0.18 5.34 16 19 C -0.10 -3.54 9.53 22.39 0.21 -3.33 16 20 C -0.14 -4.26 10.02 22.30 0.22 -4.04 16 21 C 0.08 2.38 7.30 22.38 0.16 2.54 16 22 F -0.14 -3.90 17.27 44.97 0.78 -3.12 16 23 C -0.13 -3.79 10.02 22.30 0.22 -3.56 16 24 C -0.10 -3.41 9.69 22.39 0.22 -3.20 16 25 H 0.11 1.71 7.90 -2.91 -0.02 1.69 16 26 H 0.12 1.71 8.06 -2.91 -0.02 1.69 16 27 H 0.11 2.68 8.06 -2.91 -0.02 2.66 16 28 H 0.07 1.64 7.86 -2.39 -0.02 1.62 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 3.14 7.26 -2.39 -0.02 3.12 16 31 H 0.09 3.47 7.91 -2.39 -0.02 3.45 16 32 H 0.04 1.92 6.47 -2.38 -0.02 1.91 16 33 H 0.03 1.40 7.86 -2.39 -0.02 1.38 16 34 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 35 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 36 H 0.16 3.93 8.06 -2.91 -0.02 3.90 16 37 H 0.17 3.57 8.06 -2.91 -0.02 3.54 16 38 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -61.00 341.95 6.57 -54.43 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 1.06 Total: 18.60 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 5.04 Total: 2.68 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -1.31 Total: -72.40 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -1.02 Total: -42.26 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.78 Total: -3.12 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.07 kcal Total: -61.00 6.57 -54.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558138184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.852 kcal (2) G-P(sol) polarization free energy of solvation -60.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds