Wall clock time and date at job start Tue Mar 31 2020 06:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46772 * 2 1 4 4 H 1.09003 * 109.47067 * 56.09725 * 3 2 1 5 5 C 1.50699 * 109.46954 * 176.09419 * 3 2 1 6 6 H 1.08005 * 120.00100 * 115.70731 * 5 3 2 7 7 C 1.37878 * 120.00005 * 295.71065 * 5 3 2 8 8 N 1.31515 * 120.00152 * 346.90455 * 7 5 3 9 9 Si 1.86804 * 119.99801 * 166.91498 * 7 5 3 10 10 H 1.48496 * 109.47552 * 89.99816 * 9 7 5 11 11 H 1.48506 * 109.46662 * 209.99597 * 9 7 5 12 12 H 1.48499 * 109.47080 * 329.99395 * 9 7 5 13 13 N 1.46497 * 109.47164 * 296.09457 * 3 2 1 14 14 C 1.39705 * 119.99645 * 97.62768 * 13 3 2 15 15 C 1.39023 * 120.00748 * 8.11972 * 14 13 3 16 16 C 1.38203 * 120.22148 * 179.76489 * 15 14 13 17 17 C 1.38033 * 120.22722 * 0.51370 * 16 15 14 18 18 N 1.48019 * 119.99957 * 179.72225 * 17 16 15 19 19 O 1.21800 * 120.00026 * 353.60156 * 18 17 16 20 20 O 1.21792 * 119.99877 * 173.60774 * 18 17 16 21 21 C 1.39581 * 120.00222 * 359.74503 * 17 16 15 22 22 C 1.47860 * 120.10610 * 179.97438 * 21 17 16 23 23 N 1.34782 * 119.99563 * 119.89484 * 22 21 17 24 24 O 1.21546 * 120.00418 * 299.89696 * 22 21 17 25 25 C 1.38638 * 120.00209 * 188.39746 * 14 13 3 26 26 H 1.09000 * 109.46961 * 185.20562 * 1 2 3 27 27 H 1.09001 * 109.47333 * 305.20300 * 1 2 3 28 28 H 1.09002 * 109.47250 * 65.20555 * 1 2 3 29 29 H 1.08995 * 109.47420 * 240.00255 * 2 1 3 30 30 H 1.09004 * 109.47191 * 119.99688 * 2 1 3 31 31 H 0.96996 * 120.00005 * 359.83538 * 8 7 5 32 32 H 0.96997 * 120.00116 * 277.62605 * 13 3 2 33 33 H 1.07992 * 119.89026 * 0.02562 * 15 14 13 34 34 H 1.07995 * 119.89102 * 180.23588 * 16 15 14 35 35 H 0.96997 * 119.99950 * 359.97438 * 23 22 21 36 36 H 0.96998 * 119.99722 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.11635 * 359.95826 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6205 1.9762 0.8530 5 6 3.5438 1.4437 0.0968 6 1 4.1371 1.8306 -0.7186 7 6 4.1623 0.9508 1.2262 8 7 3.4593 0.7207 2.3136 9 14 5.9989 0.6100 1.2118 10 1 6.7317 1.8272 1.6439 11 1 6.3024 -0.5069 2.1423 12 1 6.4227 0.2387 -0.1621 13 7 1.6299 2.1055 -1.2404 14 6 0.4916 2.9154 -1.2562 15 6 -0.1548 3.2294 -0.0662 16 6 -1.2784 4.0341 -0.0762 17 6 -1.7724 4.5229 -1.2688 18 7 -2.9796 5.3794 -1.2743 19 8 -3.6044 5.5579 -0.2441 20 8 -3.3483 5.9055 -2.3090 21 6 -1.1339 4.2092 -2.4697 22 6 -1.6615 4.7310 -3.7486 23 7 -0.8913 5.5206 -4.5232 24 8 -2.7897 4.4481 -4.1014 25 6 0.0032 3.4013 -2.4593 26 1 -0.3633 -1.0234 0.0932 27 1 -0.3634 0.5924 0.8397 28 1 -0.3634 0.4310 -0.9329 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.5061 0.9001 2.3218 32 1 2.1486 1.9821 -2.0506 33 1 0.2246 2.8466 0.8696 34 1 -1.7741 4.2778 0.8518 35 1 0.0089 5.7467 -4.2415 36 1 -1.2375 5.8632 -5.3620 37 1 0.5017 3.1555 -3.3854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596197916.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:43 Heat of formation + Delta-G solvation = -26.012957 kcal Electronic energy + Delta-G solvation = -23523.965959 eV Core-core repulsion = 19882.997076 eV Total energy + Delta-G solvation = -3640.968884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.86857 -40.06768 -38.88307 -36.58184 -36.12103 -33.81023 -33.55658 -31.79581 -31.23619 -29.96412 -27.06716 -25.23154 -24.37081 -23.34576 -22.25940 -21.11954 -20.16028 -18.98257 -18.43636 -17.79764 -17.66778 -17.24654 -16.89836 -16.24013 -15.75117 -14.85733 -14.45794 -14.23471 -14.01376 -13.88049 -13.74792 -13.43039 -12.90230 -12.85155 -12.38082 -12.03055 -11.65617 -11.18012 -11.08134 -11.01498 -10.85263 -10.78705 -10.77161 -10.44726 -10.33586 -10.25334 -10.02063 -9.77668 -9.36083 -9.09333 -8.60553 -7.47308 -6.78068 -4.52837 0.17253 0.91787 1.71592 1.81846 2.56223 3.20565 3.22155 3.25156 3.39730 3.44851 3.69070 4.22925 4.45340 4.58258 4.91293 4.95494 4.99490 5.14181 5.52505 5.57795 5.69682 5.72671 5.84056 5.94846 6.03314 6.25754 6.30100 6.43055 6.56600 6.62896 6.68257 6.78431 7.02350 7.11059 7.35113 7.48681 7.97286 8.02722 8.06685 8.11690 8.39837 9.16483 10.59081 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.024080 B = 0.003951 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.489533 B = 7084.985478 C = 7487.804864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.134 4.134 3 C 0.251 3.749 4 H 0.045 0.955 5 C -0.625 4.625 6 H 0.058 0.942 7 C 0.034 3.966 8 N -0.893 5.893 9 Si 1.069 2.931 10 H -0.286 1.286 11 H -0.281 1.281 12 H -0.287 1.287 13 N -0.685 5.685 14 C 0.283 3.717 15 C -0.188 4.188 16 C -0.003 4.003 17 C -0.100 4.100 18 N 0.045 4.955 19 O -0.192 6.192 20 O -0.164 6.164 21 C -0.015 4.015 22 C 0.569 3.431 23 N -0.845 5.845 24 O -0.508 6.508 25 C -0.187 4.187 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.272 0.728 32 H 0.401 0.599 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.403 0.597 36 H 0.407 0.593 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 4.752 -8.281 9.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C 0.149 3.851 4 H 0.062 0.938 5 C -0.663 4.663 6 H 0.076 0.924 7 C -0.173 4.173 8 N -0.526 5.526 9 Si 0.897 3.103 10 H -0.213 1.213 11 H -0.206 1.206 12 H -0.213 1.213 13 N -0.302 5.302 14 C 0.166 3.834 15 C -0.212 4.212 16 C -0.023 4.023 17 C -0.188 4.188 18 N 0.558 4.442 19 O -0.400 6.400 20 O -0.379 6.379 21 C -0.021 4.021 22 C 0.352 3.648 23 N -0.409 5.409 24 O -0.382 6.382 25 C -0.212 4.212 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.236 0.764 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.231 0.769 36 H 0.238 0.762 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.557 3.349 -7.171 8.066 hybrid contribution -0.991 0.917 -1.430 1.967 sum -2.548 4.267 -8.601 9.934 Atomic orbital electron populations 1.21887 0.97933 1.00444 1.00674 1.22072 0.93083 0.99765 1.02399 1.19186 0.95996 0.88476 0.81485 0.93761 1.21969 0.89759 1.47907 1.06635 0.92350 1.25791 1.07027 0.93115 0.91364 1.70828 1.09796 1.44503 1.27499 0.83529 0.73755 0.77270 0.75793 1.21254 1.20604 1.21266 1.45769 1.23391 1.45922 1.15080 1.18188 0.86194 0.86109 0.92890 1.20985 0.97783 1.03758 0.98650 1.20643 0.93648 0.91631 0.96401 1.20485 0.93584 1.09099 0.95614 1.43408 1.01403 0.99385 1.00034 1.94478 1.55461 1.67350 1.22669 1.94554 1.72315 1.49719 1.21280 1.19287 0.94038 0.96793 0.91946 1.17930 0.84967 0.78586 0.83349 1.43649 1.18784 1.53167 1.25315 1.90875 1.17582 1.57435 1.72340 1.20561 0.97650 1.05092 0.97850 0.93862 0.93297 0.93859 0.93020 0.90457 0.91670 0.76433 0.83010 0.83108 0.76902 0.76166 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.81 37.16 0.33 -2.14 16 2 C -0.13 -2.53 5.35 -26.73 -0.14 -2.67 16 3 C 0.25 4.90 1.81 -69.08 -0.13 4.77 16 4 H 0.04 0.93 4.85 -51.93 -0.25 0.68 16 5 C -0.62 -14.30 8.69 -34.44 -0.30 -14.60 16 6 H 0.06 1.34 7.85 -52.48 -0.41 0.92 16 7 C 0.03 0.83 5.10 -17.82 -0.09 0.74 16 8 N -0.89 -22.92 12.94 55.43 0.72 -22.20 16 9 Si 1.07 21.81 29.92 -169.99 -5.09 16.72 16 10 H -0.29 -5.74 7.11 56.52 0.40 -5.33 16 11 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 12 H -0.29 -5.58 7.11 56.52 0.40 -5.18 16 13 N -0.69 -10.83 4.85 -53.32 -0.26 -11.09 16 14 C 0.28 4.11 5.46 -83.83 -0.46 3.65 16 15 C -0.19 -2.78 8.30 -39.30 -0.33 -3.11 16 16 C 0.00 -0.04 9.54 -39.67 -0.38 -0.42 16 17 C -0.10 -1.59 6.87 -79.52 -0.55 -2.14 16 18 N 0.04 0.81 4.45 34.17 0.15 0.96 16 19 O -0.19 -3.49 18.46 -29.46 -0.54 -4.03 16 20 O -0.16 -3.14 15.21 -36.88 -0.56 -3.70 16 21 C -0.01 -0.21 5.63 -104.99 -0.59 -0.81 16 22 C 0.57 8.22 5.88 -12.32 -0.07 8.14 16 23 N -0.84 -7.99 8.87 30.53 0.27 -7.71 16 24 O -0.51 -9.38 16.01 -18.10 -0.29 -9.67 16 25 C -0.19 -2.40 9.64 -38.97 -0.38 -2.78 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.78 7.60 -51.93 -0.39 0.38 16 28 H 0.04 0.68 7.09 -51.93 -0.37 0.31 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.65 6.57 -51.93 -0.34 1.31 16 31 H 0.27 6.84 6.38 -40.82 -0.26 6.58 16 32 H 0.40 5.74 8.74 -40.82 -0.36 5.38 16 33 H 0.15 2.32 5.64 -52.49 -0.30 2.02 16 34 H 0.15 1.95 7.61 -52.49 -0.40 1.55 16 35 H 0.40 2.75 8.82 -40.82 -0.36 2.39 16 36 H 0.41 3.15 8.93 -40.82 -0.36 2.78 16 37 H 0.14 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 317.54 15.07 4.79 4.79 Total: -1.00 -29.36 317.54 -7.76 -37.12 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -3.87 Total: 10.18 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -3.08 Total: -11.35 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.88 Total: -40.05 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.39 Total: -17.41 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.09 Total: 16.72 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.36 -7.76 -37.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596197916.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.108 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds