Wall clock time and date at job start Tue Mar 31 2020 06:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46772 * 2 1 4 4 H 1.09003 * 109.47067 * 56.09725 * 3 2 1 5 5 C 1.50699 * 109.46954 * 176.09419 * 3 2 1 6 6 H 1.08005 * 120.00100 * 115.70731 * 5 3 2 7 7 C 1.37878 * 120.00005 * 295.71065 * 5 3 2 8 8 N 1.31515 * 120.00152 * 346.90455 * 7 5 3 9 9 Si 1.86804 * 119.99801 * 166.91498 * 7 5 3 10 10 H 1.48496 * 109.47552 * 89.99816 * 9 7 5 11 11 H 1.48506 * 109.46662 * 209.99597 * 9 7 5 12 12 H 1.48499 * 109.47080 * 329.99395 * 9 7 5 13 13 N 1.46497 * 109.47164 * 296.09457 * 3 2 1 14 14 C 1.39705 * 119.99645 * 97.62768 * 13 3 2 15 15 C 1.39023 * 120.00748 * 8.11972 * 14 13 3 16 16 C 1.38203 * 120.22148 * 179.76489 * 15 14 13 17 17 C 1.38033 * 120.22722 * 0.51370 * 16 15 14 18 18 N 1.48019 * 119.99957 * 179.72225 * 17 16 15 19 19 O 1.21800 * 120.00026 * 353.60156 * 18 17 16 20 20 O 1.21792 * 119.99877 * 173.60774 * 18 17 16 21 21 C 1.39581 * 120.00222 * 359.74503 * 17 16 15 22 22 C 1.47860 * 120.10610 * 179.97438 * 21 17 16 23 23 N 1.34782 * 119.99563 * 119.89484 * 22 21 17 24 24 O 1.21546 * 120.00418 * 299.89696 * 22 21 17 25 25 C 1.38638 * 120.00209 * 188.39746 * 14 13 3 26 26 H 1.09000 * 109.46961 * 185.20562 * 1 2 3 27 27 H 1.09001 * 109.47333 * 305.20300 * 1 2 3 28 28 H 1.09002 * 109.47250 * 65.20555 * 1 2 3 29 29 H 1.08995 * 109.47420 * 240.00255 * 2 1 3 30 30 H 1.09004 * 109.47191 * 119.99688 * 2 1 3 31 31 H 0.96996 * 120.00005 * 359.83538 * 8 7 5 32 32 H 0.96997 * 120.00116 * 277.62605 * 13 3 2 33 33 H 1.07992 * 119.89026 * 0.02562 * 15 14 13 34 34 H 1.07995 * 119.89102 * 180.23588 * 16 15 14 35 35 H 0.96997 * 119.99950 * 359.97438 * 23 22 21 36 36 H 0.96998 * 119.99722 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.11635 * 359.95826 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6205 1.9762 0.8530 5 6 3.5438 1.4437 0.0968 6 1 4.1371 1.8306 -0.7186 7 6 4.1623 0.9508 1.2262 8 7 3.4593 0.7207 2.3136 9 14 5.9989 0.6100 1.2118 10 1 6.7317 1.8272 1.6439 11 1 6.3024 -0.5069 2.1423 12 1 6.4227 0.2387 -0.1621 13 7 1.6299 2.1055 -1.2404 14 6 0.4916 2.9154 -1.2562 15 6 -0.1548 3.2294 -0.0662 16 6 -1.2784 4.0341 -0.0762 17 6 -1.7724 4.5229 -1.2688 18 7 -2.9796 5.3794 -1.2743 19 8 -3.6044 5.5579 -0.2441 20 8 -3.3483 5.9055 -2.3090 21 6 -1.1339 4.2092 -2.4697 22 6 -1.6615 4.7310 -3.7486 23 7 -0.8913 5.5206 -4.5232 24 8 -2.7897 4.4481 -4.1014 25 6 0.0032 3.4013 -2.4593 26 1 -0.3633 -1.0234 0.0932 27 1 -0.3634 0.5924 0.8397 28 1 -0.3634 0.4310 -0.9329 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.5061 0.9001 2.3218 32 1 2.1486 1.9821 -2.0506 33 1 0.2246 2.8466 0.8696 34 1 -1.7741 4.2778 0.8518 35 1 0.0089 5.7467 -4.2415 36 1 -1.2375 5.8632 -5.3620 37 1 0.5017 3.1555 -3.3854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596197916.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:43 Heat of formation + Delta-G solvation = -44.822749 kcal Electronic energy + Delta-G solvation = -23524.781613 eV Core-core repulsion = 19882.997076 eV Total energy + Delta-G solvation = -3641.784537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.19780 -41.27116 -40.08125 -37.98983 -37.50229 -35.09444 -34.82410 -33.30246 -32.39201 -31.27611 -28.57745 -26.64544 -25.59394 -24.90307 -23.46144 -22.43659 -21.49906 -20.19351 -19.80581 -19.26390 -18.97125 -18.54156 -17.98598 -17.48592 -17.04902 -16.07055 -15.74631 -15.58593 -15.53838 -15.09400 -14.98136 -14.68227 -14.28564 -14.20912 -13.87935 -13.49653 -12.90598 -12.60135 -12.58104 -12.48477 -12.35290 -12.21532 -12.16163 -11.95252 -11.84928 -11.59138 -11.31380 -10.75030 -10.74888 -10.49209 -10.38953 -8.78660 -8.61692 -6.38400 -1.14049 -0.22064 0.41749 0.53685 1.44931 1.58205 1.63103 1.80014 2.13633 2.25302 2.46243 2.59964 3.13611 3.35331 3.59280 3.77953 3.83113 3.99100 4.27027 4.32836 4.35080 4.45420 4.53483 4.66982 4.83631 4.88053 5.06467 5.08629 5.12146 5.24673 5.42724 5.50320 5.77149 5.80212 5.93147 6.23925 6.33523 6.54027 6.62091 6.71966 7.17892 7.37330 8.73658 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.024080 B = 0.003951 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.489533 B = 7084.985478 C = 7487.804864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.257 3.743 4 H 0.031 0.969 5 C -0.627 4.627 6 H 0.058 0.942 7 C -0.010 4.010 8 N -0.923 5.923 9 Si 1.107 2.893 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.270 1.270 13 N -0.683 5.683 14 C 0.282 3.718 15 C -0.193 4.193 16 C 0.005 3.995 17 C -0.113 4.113 18 N 0.045 4.955 19 O -0.200 6.200 20 O -0.190 6.190 21 C -0.019 4.019 22 C 0.567 3.433 23 N -0.818 5.818 24 O -0.555 6.555 25 C -0.161 4.161 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.265 0.735 32 H 0.411 0.589 33 H 0.146 0.854 34 H 0.163 0.837 35 H 0.418 0.582 36 H 0.418 0.582 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 4.897 -9.776 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.153 3.847 4 H 0.049 0.951 5 C -0.665 4.665 6 H 0.076 0.924 7 C -0.212 4.212 8 N -0.559 5.559 9 Si 0.930 3.070 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.195 1.195 13 N -0.301 5.301 14 C 0.166 3.834 15 C -0.216 4.216 16 C -0.015 4.015 17 C -0.202 4.202 18 N 0.553 4.447 19 O -0.408 6.408 20 O -0.400 6.400 21 C -0.025 4.025 22 C 0.350 3.650 23 N -0.383 5.383 24 O -0.433 6.433 25 C -0.185 4.185 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.247 0.753 33 H 0.163 0.837 34 H 0.181 0.819 35 H 0.250 0.750 36 H 0.252 0.748 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.627 3.562 -8.739 9.458 hybrid contribution -1.239 0.896 -0.980 1.816 sum -1.865 4.458 -9.719 10.854 Atomic orbital electron populations 1.21781 0.95824 1.01320 1.01040 1.21905 0.94867 0.98838 1.00938 1.18873 0.94216 0.89060 0.82582 0.95095 1.22323 0.91731 1.46457 1.05986 0.92390 1.26827 1.09805 0.93113 0.91441 1.70910 1.09613 1.46770 1.28597 0.83030 0.70572 0.76968 0.76381 1.20667 1.21490 1.19493 1.45416 1.24132 1.46336 1.14218 1.18269 0.85751 0.85869 0.93463 1.20956 0.97969 1.04013 0.98712 1.20725 0.93315 0.90935 0.96560 1.20704 0.93137 1.09507 0.96813 1.43684 1.01860 0.99423 0.99698 1.94455 1.56048 1.67610 1.22681 1.94548 1.73133 1.50816 1.21468 1.19436 0.94290 0.97096 0.91704 1.17974 0.84667 0.78933 0.83476 1.43449 1.18953 1.51033 1.24855 1.90861 1.19579 1.59523 1.73334 1.20781 0.96421 1.02866 0.98453 0.92717 0.93302 0.93078 0.92961 0.93361 0.92471 0.75281 0.83683 0.81920 0.75012 0.74842 0.80563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 8.81 71.98 0.63 -3.76 16 2 C -0.13 -4.65 5.35 30.60 0.16 -4.49 16 3 C 0.26 9.76 1.81 44.25 0.08 9.84 16 4 H 0.03 1.29 4.85 -2.39 -0.01 1.28 16 5 C -0.63 -28.09 8.69 25.60 0.22 -27.86 16 6 H 0.06 2.55 7.85 -2.91 -0.02 2.53 16 7 C -0.01 -0.48 5.10 84.65 0.43 -0.05 16 8 N -0.92 -47.90 12.94 21.45 0.28 -47.62 16 9 Si 1.11 43.31 29.92 68.60 2.05 45.36 16 10 H -0.28 -10.64 7.11 99.48 0.71 -9.94 16 11 H -0.29 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 13 N -0.68 -19.99 4.85 -322.61 -1.57 -21.55 16 14 C 0.28 7.48 5.46 38.17 0.21 7.69 16 15 C -0.19 -5.40 8.30 22.45 0.19 -5.21 16 16 C 0.01 0.14 9.54 22.21 0.21 0.35 16 17 C -0.11 -3.47 6.87 36.65 0.25 -3.21 16 18 N 0.05 1.61 4.45 -45.81 -0.20 1.41 16 19 O -0.20 -7.24 18.46 18.89 0.35 -6.89 16 20 O -0.19 -7.26 15.21 25.99 0.40 -6.87 16 21 C -0.02 -0.51 5.63 -20.10 -0.11 -0.63 16 22 C 0.57 15.27 5.88 86.79 0.51 15.78 16 23 N -0.82 -13.19 8.87 -175.59 -1.56 -14.75 16 24 O -0.56 -20.02 16.01 18.54 0.30 -19.72 16 25 C -0.16 -3.60 9.64 22.67 0.22 -3.38 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.50 7.60 -2.39 -0.02 1.48 16 28 H 0.05 1.49 7.09 -2.39 -0.02 1.47 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 2.07 6.57 -2.38 -0.02 2.05 16 31 H 0.26 13.60 6.38 -92.71 -0.59 13.01 16 32 H 0.41 10.51 8.74 -92.71 -0.81 9.69 16 33 H 0.15 4.33 5.64 -2.91 -0.02 4.32 16 34 H 0.16 4.02 7.61 -2.91 -0.02 4.00 16 35 H 0.42 4.24 8.82 -92.71 -0.82 3.43 16 36 H 0.42 5.37 8.93 -92.71 -0.83 4.54 16 37 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -63.47 317.54 1.94 -61.54 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -1.11 Total: 24.04 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 3.01 Total: -14.94 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -3.05 Total: -82.52 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: 1.04 Total: -33.48 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.05 Total: 45.36 kcal Total: -63.47 1.94 -61.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596197916.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.713 kcal (2) G-P(sol) polarization free energy of solvation -63.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds