Wall clock time and date at job start Tue Mar 31 2020 08:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47506 * 2 1 4 4 C 1.50703 * 109.47093 * 119.99807 * 2 1 3 5 5 O 1.21280 * 120.00077 * 34.67892 * 4 2 1 6 6 N 1.34778 * 120.00057 * 214.68123 * 4 2 1 7 7 C 1.46927 * 120.63022 * 354.59441 * 6 4 2 8 8 C 1.53193 * 108.77292 * 233.58436 * 7 6 4 9 9 C 1.53039 * 109.31375 * 305.36253 * 8 7 6 10 10 C 1.53050 * 109.53631 * 61.36497 * 9 8 7 11 11 H 1.09001 * 109.49627 * 58.62182 * 10 9 8 12 12 C 1.50697 * 109.49230 * 178.68247 * 10 9 8 13 13 H 1.08001 * 119.99597 * 120.00591 * 12 10 9 14 14 C 1.37874 * 120.00486 * 299.99907 * 12 10 9 15 15 N 1.31515 * 119.99982 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00199 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47294 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47573 * 119.99941 * 16 14 12 19 19 H 1.48496 * 109.47028 * 240.00031 * 16 14 12 20 20 C 1.46925 * 120.62916 * 174.30755 * 6 4 2 21 21 C 1.50704 * 109.47425 * 239.99523 * 2 1 3 22 22 C 1.38419 * 122.54003 * 119.99842 * 21 2 1 23 23 C 1.33389 * 114.91964 * 179.97438 * 22 21 2 24 24 S 1.75882 * 109.59490 * 0.02562 * 23 22 21 25 25 C 1.33386 * 122.53471 * 299.71337 * 21 2 1 26 26 H 1.09002 * 109.47047 * 64.98164 * 1 2 3 27 27 H 1.08998 * 109.47171 * 184.98190 * 1 2 3 28 28 H 1.08997 * 109.46927 * 304.98440 * 1 2 3 29 29 H 1.08996 * 109.58651 * 353.37146 * 7 6 4 30 30 H 1.08996 * 109.58794 * 113.79734 * 7 6 4 31 31 H 1.09003 * 109.49659 * 65.31782 * 8 7 6 32 32 H 1.08996 * 109.49584 * 185.37662 * 8 7 6 33 33 H 1.08998 * 109.46065 * 181.38261 * 9 8 7 34 34 H 1.08994 * 109.46046 * 301.34935 * 9 8 7 35 35 H 0.96992 * 120.00316 * 179.97438 * 15 14 12 36 36 H 1.08993 * 109.58746 * 246.20102 * 20 6 4 37 37 H 1.09001 * 109.58877 * 6.63281 * 20 6 4 38 38 H 1.08002 * 122.54041 * 359.96096 * 22 21 2 39 39 H 1.08000 * 125.20246 * 179.97438 * 23 22 21 40 40 H 1.08007 * 125.20983 * 0.02562 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.4201 -1.6577 1.6762 6 7 3.1619 -0.2929 1.8357 7 6 3.9777 0.7756 1.2430 8 6 5.4196 0.2765 1.1057 9 6 5.9177 -0.2127 2.4675 10 6 5.0464 -1.3777 2.9430 11 1 5.0845 -2.1833 2.2097 12 6 5.5576 -1.8796 4.2688 13 1 4.9156 -1.8610 5.1370 14 6 6.8448 -2.3625 4.3733 15 7 7.6267 -2.3847 3.3161 16 14 7.4782 -2.9852 6.0166 17 1 6.4110 -2.8529 7.0408 18 1 7.8676 -4.4125 5.8884 19 1 8.6596 -2.1848 6.4272 20 6 3.5974 -0.8934 3.1040 21 6 2.0324 -0.7105 -1.2304 22 6 2.8307 -0.0891 -2.1752 23 6 3.1885 -0.8600 -3.2033 24 16 2.4990 -2.4658 -3.0045 25 6 1.7460 -1.9874 -1.4886 26 1 -0.3633 0.4346 -0.9313 27 1 -0.3633 -1.0238 0.0892 28 1 -0.3633 0.5892 0.8420 29 1 3.5847 1.0325 0.2593 30 1 3.9549 1.6536 1.8885 31 1 5.4536 -0.5445 0.3894 32 1 6.0546 1.0905 0.7564 33 1 6.9517 -0.5456 2.3778 34 1 5.8600 0.6020 3.1893 35 1 8.5323 -2.7241 3.3897 36 1 3.5443 -0.1487 3.8981 37 1 2.9534 -1.7381 3.3486 38 1 3.1401 0.9418 -2.0868 39 1 3.8064 -0.5459 -4.0315 40 1 1.1422 -2.6289 -0.8637 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:47 Heat of formation + Delta-G solvation = -29.611675 kcal Electronic energy + Delta-G solvation = -21937.511239 eV Core-core repulsion = 18842.679518 eV Total energy + Delta-G solvation = -3094.831721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.48347 -39.15585 -38.20750 -35.37889 -33.96876 -32.94848 -31.88732 -29.72951 -27.37071 -26.59376 -25.73689 -23.68958 -23.25748 -21.40343 -20.18712 -19.21583 -18.75531 -18.49928 -17.95240 -16.78720 -16.68130 -16.21935 -15.46156 -15.10743 -15.04662 -14.77006 -14.51664 -14.22694 -14.06522 -13.80531 -13.67389 -13.51654 -13.30999 -13.00437 -12.88704 -12.78488 -12.56835 -12.53423 -12.29356 -11.88732 -11.81249 -11.62452 -11.55919 -11.26921 -10.87250 -10.66799 -10.43475 -9.69855 -9.47165 -9.30228 -8.11492 -6.27038 0.08858 0.73393 1.08588 1.38557 1.40727 1.51868 1.55684 1.85049 2.17900 2.43268 3.14840 3.59573 3.81199 4.02250 4.04320 4.20242 4.28326 4.35617 4.38031 4.52889 4.55050 4.63976 4.72479 4.81598 4.86481 4.89661 4.90891 4.98526 5.11860 5.15333 5.25124 5.29471 5.44230 5.50887 5.54011 5.58660 5.60993 5.93039 6.13700 6.33893 6.58785 6.83043 7.23616 7.41325 8.92299 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.004512 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.853590 B = 6204.207825 C = 6603.328393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.043 4.043 3 H 0.131 0.869 4 C 0.511 3.489 5 O -0.591 6.591 6 N -0.606 5.606 7 C 0.108 3.892 8 C -0.124 4.124 9 C -0.106 4.106 10 C 0.043 3.957 11 H -0.020 1.020 12 C -0.537 4.537 13 H 0.052 0.948 14 C 0.017 3.983 15 N -0.914 5.914 16 Si 0.955 3.045 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.275 1.275 20 C 0.129 3.871 21 C -0.098 4.098 22 C -0.133 4.133 23 C -0.205 4.205 24 S 0.088 5.912 25 C -0.221 4.221 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.174 0.826 39 H 0.194 0.806 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.305 10.346 -13.914 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.066 4.066 3 H 0.149 0.851 4 C 0.300 3.700 5 O -0.472 6.472 6 N -0.336 5.336 7 C -0.014 4.014 8 C -0.162 4.162 9 C -0.144 4.144 10 C 0.023 3.977 11 H -0.002 1.002 12 C -0.575 4.575 13 H 0.070 0.930 14 C -0.182 4.182 15 N -0.553 5.553 16 Si 0.781 3.219 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.200 1.200 20 C 0.006 3.994 21 C -0.111 4.111 22 C -0.162 4.162 23 C -0.340 4.340 24 S 0.352 5.648 25 C -0.356 4.356 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.130 0.870 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.191 0.809 39 H 0.211 0.789 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.388 8.459 -14.603 19.311 hybrid contribution 0.624 0.070 1.988 2.085 sum -8.765 8.528 -12.614 17.569 Atomic orbital electron populations 1.21663 0.90911 1.02466 1.03420 1.20105 0.98562 1.00285 0.87690 0.85134 1.21244 0.79959 0.83547 0.85264 1.90614 1.59141 1.30047 1.67442 1.48374 1.23496 1.38147 1.23631 1.22043 0.90315 0.89033 0.99965 1.21869 0.96276 1.00566 0.97513 1.21422 1.01570 0.96599 0.94784 1.18933 0.90441 0.93460 0.94829 1.00157 1.21479 0.98348 1.41828 0.95889 0.92982 1.25694 0.97058 0.95652 0.99828 1.70020 1.08068 1.46985 1.30268 0.85552 0.78387 0.77851 0.80149 1.19259 1.20972 1.20001 1.21637 0.96414 0.96827 0.84524 1.18680 1.01302 0.93822 0.97302 1.20303 0.99498 1.02891 0.93514 1.25939 1.07479 0.95481 1.05097 1.84233 1.47668 1.14766 1.18136 1.25576 1.08216 1.00058 1.01791 0.89211 0.93488 0.91515 0.87029 0.89548 0.94376 0.89034 0.92059 0.94155 0.92954 0.91701 0.93202 0.80918 0.78925 0.83550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.71 71.98 0.63 -2.15 16 2 C -0.04 -1.05 2.19 -12.28 -0.03 -1.08 16 3 H 0.13 2.28 6.09 -2.39 -0.01 2.26 16 4 C 0.51 18.20 6.38 87.66 0.56 18.76 16 5 O -0.59 -26.17 15.58 -3.03 -0.05 -26.22 16 6 N -0.61 -22.06 2.97 -818.07 -2.43 -24.49 16 7 C 0.11 2.98 6.15 86.36 0.53 3.51 16 8 C -0.12 -4.21 6.08 30.67 0.19 -4.02 16 9 C -0.11 -4.78 4.96 30.62 0.15 -4.63 16 10 C 0.04 2.20 2.27 -11.31 -0.03 2.17 16 11 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 12 C -0.54 -30.25 8.56 25.60 0.22 -30.03 16 13 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 14 C 0.02 0.93 5.30 84.65 0.45 1.38 16 15 N -0.91 -53.08 11.31 21.45 0.24 -52.84 16 16 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 20 C 0.13 5.76 5.69 86.51 0.49 6.25 16 21 C -0.10 -2.42 4.58 -20.92 -0.10 -2.51 16 22 C -0.13 -2.56 9.48 21.22 0.20 -2.36 16 23 C -0.20 -3.85 11.23 66.72 0.75 -3.10 16 24 S 0.09 2.04 23.34 -56.49 -1.32 0.73 16 25 C -0.22 -6.20 10.20 66.72 0.68 -5.52 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.24 7.53 -2.39 -0.02 1.22 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.11 2.22 5.08 -2.39 -0.01 2.21 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.06 3.20 6.04 -2.39 -0.01 3.19 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 35 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.05 2.48 7.00 -2.39 -0.02 2.46 16 38 H 0.17 2.17 8.02 -2.91 -0.02 2.15 16 39 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.15 4.63 8.05 -2.91 -0.02 4.61 16 Total: -1.00 -70.46 332.88 4.20 -66.26 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.03 Total: 13.73 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 4.70 Total: -23.32 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -2.18 Total: -77.32 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.05 Total: -26.22 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.32 Total: 0.73 kcal Total: -70.46 4.20 -66.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.647 kcal (2) G-P(sol) polarization free energy of solvation -70.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds