Wall clock time and date at job start Tue Mar 31 2020 08:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46927 * 2 1 4 4 C 1.50693 * 109.47173 * 239.99495 * 2 1 3 5 5 O 1.21284 * 120.00288 * 335.32933 * 4 2 1 6 6 N 1.34784 * 120.00243 * 155.32249 * 4 2 1 7 7 C 1.46928 * 120.62702 * 355.27920 * 6 4 2 8 8 C 1.53194 * 108.77517 * 126.40899 * 7 6 4 9 9 C 1.53037 * 109.31125 * 54.63598 * 8 7 6 10 10 C 1.53044 * 109.53694 * 298.63419 * 9 8 7 11 11 H 1.09003 * 109.49692 * 301.37816 * 10 9 8 12 12 C 1.50704 * 109.49874 * 181.31862 * 10 9 8 13 13 H 1.07996 * 119.99927 * 240.00093 * 12 10 9 14 14 C 1.37879 * 119.99748 * 59.72066 * 12 10 9 15 15 N 1.31509 * 120.00132 * 0.27849 * 14 12 10 16 16 Si 1.86797 * 119.99834 * 180.27735 * 14 12 10 17 17 H 1.48502 * 109.47339 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47392 * 120.00241 * 16 14 12 19 19 H 1.48505 * 109.47278 * 240.00272 * 16 14 12 20 20 C 1.46926 * 120.63171 * 175.29412 * 6 4 2 21 21 C 1.50702 * 109.47266 * 119.99535 * 2 1 3 22 22 C 1.38420 * 122.54000 * 240.00325 * 21 2 1 23 23 C 1.33387 * 114.92073 * 179.97438 * 22 21 2 24 24 S 1.75879 * 109.59554 * 359.97438 * 23 22 21 25 25 C 1.33392 * 122.53888 * 59.70862 * 21 2 1 26 26 H 1.08996 * 109.47205 * 184.97485 * 1 2 3 27 27 H 1.09006 * 109.47202 * 304.96894 * 1 2 3 28 28 H 1.08997 * 109.47449 * 64.97347 * 1 2 3 29 29 H 1.08996 * 109.58499 * 6.62190 * 7 6 4 30 30 H 1.08999 * 109.58482 * 246.19795 * 7 6 4 31 31 H 1.08991 * 109.49494 * 294.68238 * 8 7 6 32 32 H 1.09001 * 109.52167 * 174.59787 * 8 7 6 33 33 H 1.08994 * 109.46319 * 178.61212 * 9 8 7 34 34 H 1.09003 * 109.46556 * 58.65432 * 9 8 7 35 35 H 0.97003 * 119.99889 * 179.97438 * 15 14 12 36 36 H 1.09011 * 109.58143 * 113.80316 * 20 6 4 37 37 H 1.08993 * 109.58434 * 353.38247 * 20 6 4 38 38 H 1.08001 * 122.54080 * 359.94924 * 22 21 2 39 39 H 1.08001 * 125.20094 * 180.02562 * 23 22 21 40 40 H 1.08003 * 125.19751 * 0.02906 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 1.3346 -1.5352 -1.7818 6 7 3.2569 -0.4294 -1.7181 7 6 4.0721 0.6390 -1.1242 8 6 5.4432 0.0650 -0.7537 9 6 6.0679 -0.5900 -1.9877 10 6 5.1760 -1.7389 -2.4641 11 1 5.0610 -2.4672 -1.6613 12 6 5.8081 -2.4039 -3.6597 13 1 5.2824 -2.4320 -4.6026 14 6 7.0600 -2.9713 -3.5511 15 7 7.7002 -2.9370 -2.4029 16 14 7.8468 -3.7888 -5.0351 17 1 6.9281 -3.6933 -6.1979 18 1 9.1249 -3.1050 -5.3573 19 1 8.1130 -5.2176 -4.7300 20 6 3.8019 -1.1854 -2.8540 21 6 2.0324 -0.7103 1.2305 22 6 2.8306 -0.0888 2.1753 23 6 3.1875 -0.8592 3.2040 24 16 2.4972 -2.4646 3.0061 25 6 1.7368 -1.9840 1.4947 26 1 -0.3633 -1.0237 0.0891 27 1 -0.3634 0.5890 0.8422 28 1 -0.3634 0.4347 -0.9311 29 1 3.5806 1.0185 -0.2284 30 1 4.1969 1.4470 -1.8451 31 1 5.3251 -0.6799 0.0331 32 1 6.0909 0.8676 -0.4008 33 1 7.0543 -0.9777 -1.7330 34 1 6.1630 0.1496 -2.7827 35 1 8.5808 -3.3365 -2.3265 36 1 3.9047 -0.5261 -3.7161 37 1 3.1322 -2.0095 -3.0995 38 1 3.1412 0.9417 2.0860 39 1 3.8052 -0.5448 4.0323 40 1 1.1254 -2.6227 0.8744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:51 Heat of formation + Delta-G solvation = -12.563219 kcal Electronic energy + Delta-G solvation = -22060.160606 eV Core-core repulsion = 18966.068161 eV Total energy + Delta-G solvation = -3094.092445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.13625 -37.92757 -36.71868 -33.53196 -32.78060 -31.27574 -30.16917 -28.73720 -25.78439 -24.97693 -24.44289 -22.40961 -21.65130 -19.88281 -18.85088 -17.98789 -17.66859 -16.95613 -16.19468 -15.36199 -15.11074 -14.57116 -14.23010 -13.75018 -13.51880 -13.39842 -13.02003 -12.79140 -12.71785 -12.65219 -12.32985 -12.16538 -12.01264 -11.80450 -11.55164 -11.30195 -10.99324 -10.80945 -10.70376 -10.62183 -10.25218 -9.94022 -9.80289 -9.48639 -9.29112 -8.82244 -8.70730 -8.38489 -8.28372 -7.86793 -6.01546 -4.08650 1.07048 1.71501 2.03534 2.65853 3.12339 3.28646 3.36855 3.40983 3.59534 4.42783 4.79183 4.85234 5.06676 5.11493 5.23704 5.28942 5.36711 5.50824 5.65347 5.66546 5.77267 5.84676 5.84914 6.08521 6.12087 6.20194 6.35186 6.38334 6.44913 6.49201 6.51641 6.67727 6.83338 6.99115 7.18959 7.34920 7.69880 7.93007 8.04022 8.08632 8.38147 8.66648 8.95348 9.56243 11.03844 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.004874 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.914210 B = 5743.151985 C = 6252.507123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.053 4.053 3 H 0.097 0.903 4 C 0.518 3.482 5 O -0.550 6.550 6 N -0.599 5.599 7 C 0.108 3.892 8 C -0.132 4.132 9 C -0.112 4.112 10 C 0.041 3.959 11 H 0.028 0.972 12 C -0.513 4.513 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.117 3.883 21 C -0.093 4.093 22 C -0.124 4.124 23 C -0.213 4.213 24 S 0.096 5.904 25 C -0.192 4.192 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.035 0.965 35 H 0.259 0.741 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.398 8.474 11.104 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.077 4.077 3 H 0.115 0.885 4 C 0.305 3.695 5 O -0.429 6.429 6 N -0.330 5.330 7 C -0.015 4.015 8 C -0.171 4.171 9 C -0.150 4.150 10 C 0.022 3.978 11 H 0.047 0.953 12 C -0.552 4.552 13 H 0.075 0.925 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.004 4.004 21 C -0.106 4.106 22 C -0.155 4.155 23 C -0.348 4.348 24 S 0.359 5.641 25 C -0.327 4.327 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.158 0.842 39 H 0.181 0.819 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.530 6.623 11.743 16.510 hybrid contribution 0.754 0.885 -1.533 1.924 sum -8.776 7.508 10.210 15.416 Atomic orbital electron populations 1.21629 0.91990 1.03084 1.01749 1.20047 0.97683 0.99488 0.90437 0.88492 1.20317 0.81458 0.82993 0.84776 1.90641 1.56218 1.35219 1.60803 1.48268 1.15383 1.35545 1.33790 1.21796 0.92872 0.89508 0.97365 1.21968 0.94525 0.99780 1.00787 1.21624 1.02951 0.96975 0.93463 1.18962 0.88563 0.93410 0.96890 0.95340 1.21120 1.01777 1.35805 0.96457 0.92461 1.24934 0.97132 0.95893 0.95855 1.69885 1.13923 1.45037 1.23882 0.86536 0.79217 0.79188 0.83076 1.19727 1.21041 1.21032 1.21994 0.97548 0.94837 0.85978 1.18459 1.01084 0.94116 0.96943 1.20011 1.00044 1.01339 0.94082 1.25513 1.08136 0.96752 1.04438 1.84237 1.47170 1.13158 1.19485 1.25523 1.06944 0.99362 1.00899 0.91553 0.92115 0.92046 0.91039 0.92042 0.92336 0.92642 0.88643 0.94668 0.93060 0.92776 0.90442 0.84243 0.81898 0.81674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.53 37.16 0.32 -1.21 16 2 C -0.05 -0.71 2.16 -92.93 -0.20 -0.91 16 3 H 0.10 1.10 6.18 -51.93 -0.32 0.78 16 4 C 0.52 9.36 6.51 -10.99 -0.07 9.29 16 5 O -0.55 -11.72 15.62 5.55 0.09 -11.64 16 6 N -0.60 -11.19 2.97 -172.77 -0.51 -11.70 16 7 C 0.11 1.68 6.27 -3.71 -0.02 1.66 16 8 C -0.13 -2.37 6.08 -26.61 -0.16 -2.53 16 9 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 10 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 11 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.51 -13.98 8.57 -34.44 -0.30 -14.27 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -25.05 11.30 55.43 0.63 -24.42 16 16 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 C 0.12 2.58 5.64 -3.71 -0.02 2.56 16 21 C -0.09 -1.27 4.56 -106.25 -0.48 -1.75 16 22 C -0.12 -1.47 9.39 -41.21 -0.39 -1.86 16 23 C -0.21 -2.42 11.23 29.04 0.33 -2.09 16 24 S 0.10 1.19 23.34 -107.50 -2.51 -1.32 16 25 C -0.19 -2.72 10.06 29.04 0.29 -2.43 16 26 H 0.07 0.86 7.44 -51.93 -0.39 0.48 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.90 4.77 -51.93 -0.25 0.66 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 2.44 6.03 -51.93 -0.31 2.13 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 37 H 0.08 1.83 7.03 -51.93 -0.37 1.47 16 38 H 0.14 1.33 7.95 -52.49 -0.42 0.92 16 39 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.17 2.43 7.88 -52.48 -0.41 2.02 16 LS Contribution 332.13 15.07 5.01 5.01 Total: -1.00 -30.25 332.13 -9.28 -39.53 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.81 Total: 2.15 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -1.14 Total: -13.78 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.11 Total: -36.12 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.51 Total: -1.32 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.25 -9.28 -39.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.969 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds