Wall clock time and date at job start Tue Mar 31 2020 08:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46927 * 2 1 4 4 C 1.50693 * 109.47173 * 239.99495 * 2 1 3 5 5 O 1.21284 * 120.00288 * 335.32933 * 4 2 1 6 6 N 1.34784 * 120.00243 * 155.32249 * 4 2 1 7 7 C 1.46928 * 120.62702 * 355.27920 * 6 4 2 8 8 C 1.53194 * 108.77517 * 126.40899 * 7 6 4 9 9 C 1.53037 * 109.31125 * 54.63598 * 8 7 6 10 10 C 1.53044 * 109.53694 * 298.63419 * 9 8 7 11 11 H 1.09003 * 109.49692 * 301.37816 * 10 9 8 12 12 C 1.50704 * 109.49874 * 181.31862 * 10 9 8 13 13 H 1.07996 * 119.99927 * 240.00093 * 12 10 9 14 14 C 1.37879 * 119.99748 * 59.72066 * 12 10 9 15 15 N 1.31509 * 120.00132 * 0.27849 * 14 12 10 16 16 Si 1.86797 * 119.99834 * 180.27735 * 14 12 10 17 17 H 1.48502 * 109.47339 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47392 * 120.00241 * 16 14 12 19 19 H 1.48505 * 109.47278 * 240.00272 * 16 14 12 20 20 C 1.46926 * 120.63171 * 175.29412 * 6 4 2 21 21 C 1.50702 * 109.47266 * 119.99535 * 2 1 3 22 22 C 1.38420 * 122.54000 * 240.00325 * 21 2 1 23 23 C 1.33387 * 114.92073 * 179.97438 * 22 21 2 24 24 S 1.75879 * 109.59554 * 359.97438 * 23 22 21 25 25 C 1.33392 * 122.53888 * 59.70862 * 21 2 1 26 26 H 1.08996 * 109.47205 * 184.97485 * 1 2 3 27 27 H 1.09006 * 109.47202 * 304.96894 * 1 2 3 28 28 H 1.08997 * 109.47449 * 64.97347 * 1 2 3 29 29 H 1.08996 * 109.58499 * 6.62190 * 7 6 4 30 30 H 1.08999 * 109.58482 * 246.19795 * 7 6 4 31 31 H 1.08991 * 109.49494 * 294.68238 * 8 7 6 32 32 H 1.09001 * 109.52167 * 174.59787 * 8 7 6 33 33 H 1.08994 * 109.46319 * 178.61212 * 9 8 7 34 34 H 1.09003 * 109.46556 * 58.65432 * 9 8 7 35 35 H 0.97003 * 119.99889 * 179.97438 * 15 14 12 36 36 H 1.09011 * 109.58143 * 113.80316 * 20 6 4 37 37 H 1.08993 * 109.58434 * 353.38247 * 20 6 4 38 38 H 1.08001 * 122.54080 * 359.94924 * 22 21 2 39 39 H 1.08001 * 125.20094 * 180.02562 * 23 22 21 40 40 H 1.08003 * 125.19751 * 0.02906 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 1.3346 -1.5352 -1.7818 6 7 3.2569 -0.4294 -1.7181 7 6 4.0721 0.6390 -1.1242 8 6 5.4432 0.0650 -0.7537 9 6 6.0679 -0.5900 -1.9877 10 6 5.1760 -1.7389 -2.4641 11 1 5.0610 -2.4672 -1.6613 12 6 5.8081 -2.4039 -3.6597 13 1 5.2824 -2.4320 -4.6026 14 6 7.0600 -2.9713 -3.5511 15 7 7.7002 -2.9370 -2.4029 16 14 7.8468 -3.7888 -5.0351 17 1 6.9281 -3.6933 -6.1979 18 1 9.1249 -3.1050 -5.3573 19 1 8.1130 -5.2176 -4.7300 20 6 3.8019 -1.1854 -2.8540 21 6 2.0324 -0.7103 1.2305 22 6 2.8306 -0.0888 2.1753 23 6 3.1875 -0.8592 3.2040 24 16 2.4972 -2.4646 3.0061 25 6 1.7368 -1.9840 1.4947 26 1 -0.3633 -1.0237 0.0891 27 1 -0.3634 0.5890 0.8422 28 1 -0.3634 0.4347 -0.9311 29 1 3.5806 1.0185 -0.2284 30 1 4.1969 1.4470 -1.8451 31 1 5.3251 -0.6799 0.0331 32 1 6.0909 0.8676 -0.4008 33 1 7.0543 -0.9777 -1.7330 34 1 6.1630 0.1496 -2.7827 35 1 8.5808 -3.3365 -2.3265 36 1 3.9047 -0.5261 -3.7161 37 1 3.1322 -2.0095 -3.0995 38 1 3.1412 0.9417 2.0860 39 1 3.8052 -0.5448 4.0323 40 1 1.1254 -2.6227 0.8744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:51 Heat of formation + Delta-G solvation = -29.274377 kcal Electronic energy + Delta-G solvation = -22060.885256 eV Core-core repulsion = 18966.068161 eV Total energy + Delta-G solvation = -3094.817095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.49484 -39.12891 -38.25689 -35.37215 -33.95863 -32.94104 -31.91096 -29.72044 -27.37348 -26.60302 -25.73242 -23.68307 -23.25349 -21.38765 -20.18235 -19.22187 -18.74036 -18.53020 -17.97142 -16.79950 -16.64329 -16.22050 -15.50953 -15.13039 -15.03929 -14.76524 -14.52442 -14.19878 -14.04712 -13.81205 -13.65122 -13.50779 -13.27315 -13.01060 -12.88949 -12.77769 -12.56729 -12.53241 -12.30260 -11.87699 -11.81537 -11.62918 -11.56878 -11.27306 -10.87116 -10.67259 -10.42952 -9.69123 -9.46959 -9.30090 -8.11559 -6.26902 0.09279 0.73833 1.09310 1.38365 1.40572 1.51494 1.55135 1.86279 2.17835 2.43196 3.14725 3.59978 3.82628 4.00292 4.03994 4.19745 4.27889 4.35556 4.37518 4.52781 4.54987 4.64605 4.72095 4.82215 4.86838 4.90605 4.92380 4.99105 5.12162 5.16116 5.25839 5.30386 5.44578 5.51108 5.54081 5.58581 5.61172 5.93146 6.13905 6.34088 6.58806 6.82803 7.23082 7.41291 8.92091 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.004874 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.914210 B = 5743.151985 C = 6252.507123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.043 4.043 3 H 0.133 0.867 4 C 0.510 3.490 5 O -0.592 6.592 6 N -0.604 5.604 7 C 0.108 3.892 8 C -0.123 4.123 9 C -0.106 4.106 10 C 0.044 3.956 11 H -0.018 1.018 12 C -0.538 4.538 13 H 0.051 0.949 14 C 0.018 3.982 15 N -0.912 5.912 16 Si 0.954 3.046 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.283 1.283 20 C 0.130 3.870 21 C -0.094 4.094 22 C -0.131 4.131 23 C -0.204 4.204 24 S 0.087 5.913 25 C -0.224 4.224 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.261 0.739 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.174 0.826 39 H 0.193 0.807 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.107 11.257 12.229 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.067 4.067 3 H 0.151 0.849 4 C 0.300 3.700 5 O -0.473 6.473 6 N -0.335 5.335 7 C -0.014 4.014 8 C -0.161 4.161 9 C -0.144 4.144 10 C 0.025 3.975 11 H 0.000 1.000 12 C -0.576 4.576 13 H 0.069 0.931 14 C -0.182 4.182 15 N -0.551 5.551 16 Si 0.780 3.220 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.209 1.209 20 C 0.008 3.992 21 C -0.107 4.107 22 C -0.161 4.161 23 C -0.339 4.339 24 S 0.351 5.649 25 C -0.360 4.360 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.131 0.869 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.191 0.809 39 H 0.210 0.790 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.240 9.427 12.888 18.449 hybrid contribution 0.663 -0.050 -1.858 1.973 sum -8.577 9.377 11.030 16.827 Atomic orbital electron populations 1.21633 0.90994 1.02499 1.03041 1.20101 0.98503 1.00382 0.87683 0.84940 1.21240 0.80752 0.82480 0.85572 1.90619 1.57394 1.37087 1.62240 1.48351 1.16101 1.35949 1.33071 1.22055 0.91172 0.88654 0.99516 1.21853 0.96383 1.00094 0.97756 1.21420 1.00997 0.96212 0.95759 1.18844 0.90669 0.93386 0.94639 0.99972 1.21467 1.02321 1.36733 0.97091 0.93106 1.25677 0.97593 0.96391 0.98491 1.70017 1.14155 1.45473 1.25504 0.85564 0.78482 0.78086 0.79874 1.19368 1.20005 1.20912 1.21532 0.95420 0.94588 0.87709 1.18650 1.01107 0.93805 0.97161 1.20289 0.99511 1.02867 0.93389 1.25930 1.07497 0.95370 1.05132 1.84252 1.47280 1.14828 1.18560 1.25545 1.08237 1.00141 1.02032 0.93541 0.89032 0.92080 0.86943 0.89820 0.94075 0.89144 0.91975 0.94379 0.92945 0.92101 0.93317 0.80876 0.78981 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 8.53 71.98 0.61 -2.14 16 2 C -0.04 -1.06 2.16 -12.29 -0.03 -1.09 16 3 H 0.13 2.30 6.18 -2.39 -0.01 2.29 16 4 C 0.51 18.19 6.51 87.65 0.57 18.76 16 5 O -0.59 -26.09 15.62 -3.04 -0.05 -26.14 16 6 N -0.60 -22.04 2.97 -818.91 -2.43 -24.47 16 7 C 0.11 2.97 6.27 86.36 0.54 3.51 16 8 C -0.12 -4.12 6.08 30.67 0.19 -3.93 16 9 C -0.11 -4.77 4.96 30.62 0.15 -4.62 16 10 C 0.04 2.25 2.25 -11.46 -0.03 2.22 16 11 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 12 C -0.54 -30.26 8.57 25.60 0.22 -30.04 16 13 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 14 C 0.02 0.98 5.30 84.66 0.45 1.43 16 15 N -0.91 -52.66 11.30 21.45 0.24 -52.41 16 16 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 C 0.13 5.86 5.64 86.36 0.49 6.35 16 21 C -0.09 -2.35 4.56 -20.92 -0.10 -2.44 16 22 C -0.13 -2.58 9.39 21.21 0.20 -2.38 16 23 C -0.20 -3.99 11.23 66.72 0.75 -3.24 16 24 S 0.09 2.10 23.34 -56.49 -1.32 0.78 16 25 C -0.22 -6.40 10.06 66.72 0.67 -5.73 16 26 H 0.05 1.21 7.44 -2.39 -0.02 1.19 16 27 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.11 2.22 4.77 -2.39 -0.01 2.20 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.06 3.23 6.03 -2.39 -0.01 3.22 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 36 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 37 H 0.05 2.43 7.03 -2.39 -0.02 2.42 16 38 H 0.17 2.22 7.95 -2.91 -0.02 2.20 16 39 H 0.19 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.15 4.63 7.88 -2.91 -0.02 4.60 16 Total: -1.00 -70.00 332.13 4.19 -65.82 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.03 Total: 13.66 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 4.69 Total: -23.33 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -2.19 Total: -76.88 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.05 Total: -26.14 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.32 Total: 0.78 kcal Total: -70.00 4.19 -65.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.541 kcal (2) G-P(sol) polarization free energy of solvation -70.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds