Wall clock time and date at job start Tue Mar 31 2020 08:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47280 * 2 1 4 4 C 1.50701 * 109.47211 * 240.00194 * 2 1 3 5 5 O 1.21286 * 119.99988 * 258.58101 * 4 2 1 6 6 N 1.34775 * 120.00057 * 78.57578 * 4 2 1 7 7 C 1.46928 * 120.62881 * 5.00734 * 6 4 2 8 8 C 1.53197 * 108.77182 * 126.37152 * 7 6 4 9 9 C 1.53038 * 109.31669 * 54.63301 * 8 7 6 10 10 C 1.53039 * 109.53730 * 298.63381 * 9 8 7 11 11 H 1.08997 * 109.49841 * 301.38103 * 10 9 8 12 12 C 1.50700 * 109.49937 * 181.31613 * 10 9 8 13 13 H 1.08003 * 120.00007 * 240.00497 * 12 10 9 14 14 C 1.37878 * 119.99776 * 59.99567 * 12 10 9 15 15 N 1.31508 * 120.00028 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99790 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47059 * 90.00479 * 16 14 12 18 18 H 1.48503 * 109.46809 * 210.00571 * 16 14 12 19 19 H 1.48497 * 109.47159 * 330.00178 * 16 14 12 20 20 C 1.46927 * 120.63275 * 184.73022 * 6 4 2 21 21 C 1.50694 * 109.47217 * 120.00466 * 2 1 3 22 22 C 1.33396 * 125.20200 * 240.00179 * 21 2 1 23 23 C 1.38420 * 114.92233 * 179.75334 * 22 21 2 24 24 C 1.33394 * 114.92088 * 0.24194 * 23 22 21 25 25 S 1.75883 * 109.59327 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47267 * 293.78650 * 1 2 3 27 27 H 1.09005 * 109.47062 * 53.78695 * 1 2 3 28 28 H 1.08996 * 109.47392 * 173.78754 * 1 2 3 29 29 H 1.09008 * 109.58327 * 246.14952 * 7 6 4 30 30 H 1.08994 * 109.58982 * 6.43699 * 7 6 4 31 31 H 1.08999 * 109.49594 * 174.58907 * 8 7 6 32 32 H 1.09003 * 109.49693 * 294.67841 * 8 7 6 33 33 H 1.09001 * 109.46140 * 58.65370 * 9 8 7 34 34 H 1.08994 * 109.46053 * 178.62600 * 9 8 7 35 35 H 0.97002 * 120.00030 * 179.97438 * 15 14 12 36 36 H 1.09007 * 109.58393 * 353.41372 * 20 6 4 37 37 H 1.08995 * 109.59187 * 113.83945 * 20 6 4 38 38 H 1.08005 * 122.53695 * 0.02562 * 22 21 2 39 39 H 1.07996 * 122.54253 * 180.22522 * 23 22 21 40 40 H 1.07995 * 125.20628 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4305 -1.8532 -1.1508 6 7 2.0390 -0.0758 -2.4195 7 6 1.6635 1.3416 -2.5136 8 6 2.7867 2.1030 -3.2246 9 6 3.0746 1.4382 -4.5726 10 6 3.5371 -0.0026 -4.3442 11 1 4.4299 -0.0033 -3.7190 12 6 3.8512 -0.6462 -5.6702 13 1 3.3126 -1.5284 -5.9834 14 6 4.8261 -0.1087 -6.4836 15 7 5.4822 0.9653 -6.1022 16 14 5.2150 -0.9061 -8.1275 17 1 4.3564 -0.3099 -9.1823 18 1 6.6432 -0.6765 -8.4634 19 1 4.9547 -2.3656 -8.0437 20 6 2.4277 -0.7865 -3.6452 21 6 2.0323 -0.7105 1.2303 22 6 2.8024 -0.1647 2.1729 23 6 3.1356 -1.0111 3.2163 24 6 2.6402 -2.2458 3.1186 25 16 1.6961 -2.3873 1.6414 26 1 -0.3633 0.4145 0.9403 27 1 -0.3633 0.6072 -0.8292 28 1 -0.3634 -1.0216 -0.1112 29 1 0.7393 1.4377 -3.0836 30 1 1.5196 1.7488 -1.5128 31 1 2.4799 3.1363 -3.3866 32 1 3.6863 2.0825 -2.6093 33 1 2.1680 1.4369 -5.1778 34 1 3.8566 1.9926 -5.0913 35 1 6.1684 1.3432 -6.6743 36 1 2.7906 -1.7824 -3.3907 37 1 1.5672 -0.8675 -4.3092 38 1 3.1369 0.8613 2.1277 39 1 3.7503 -0.6959 4.0464 40 1 2.7958 -3.0377 3.8362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597909795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:41 Heat of formation + Delta-G solvation = -10.907339 kcal Electronic energy + Delta-G solvation = -21579.323714 eV Core-core repulsion = 18485.303074 eV Total energy + Delta-G solvation = -3094.020640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.94986 -37.78090 -36.72812 -34.10684 -33.20356 -31.31813 -30.18694 -28.53236 -25.45788 -25.06701 -24.21537 -22.62690 -21.70272 -19.90994 -19.28821 -18.44861 -16.93983 -16.76723 -16.23330 -15.44938 -15.01100 -14.90658 -14.48417 -13.71051 -13.64093 -13.32793 -13.16175 -12.79748 -12.74513 -12.59373 -12.27510 -12.22075 -12.01137 -11.93451 -11.61887 -11.41786 -10.98348 -10.84987 -10.74673 -10.52971 -10.29913 -9.96932 -9.82337 -9.48856 -9.32083 -8.84915 -8.55290 -8.39718 -8.21559 -7.91726 -6.02817 -4.09984 1.08176 1.78333 2.19279 2.78373 3.01474 3.29017 3.36004 3.39504 3.53527 4.41880 4.54592 4.74698 5.03076 5.05628 5.11608 5.26980 5.37716 5.52014 5.56989 5.60292 5.63493 5.67702 5.76574 5.97314 6.09550 6.16017 6.30686 6.34717 6.38648 6.46458 6.54046 6.64288 6.79254 6.95831 7.14671 7.31550 7.68000 7.89890 7.98787 8.06556 8.36091 8.60601 8.93669 9.55028 11.02722 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.025285 B = 0.003891 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.105311 B = 7194.837534 C = 7552.512352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.045 4.045 3 H 0.109 0.891 4 C 0.511 3.489 5 O -0.537 6.537 6 N -0.599 5.599 7 C 0.107 3.893 8 C -0.136 4.136 9 C -0.112 4.112 10 C 0.039 3.961 11 H 0.029 0.971 12 C -0.514 4.514 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.118 3.882 21 C -0.156 4.156 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.235 4.235 25 S 0.154 5.846 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.096 0.904 35 H 0.260 0.740 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.632 1.629 15.519 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 H 0.126 0.874 4 C 0.297 3.703 5 O -0.415 6.415 6 N -0.331 5.331 7 C -0.016 4.016 8 C -0.174 4.174 9 C -0.150 4.150 10 C 0.020 3.980 11 H 0.047 0.953 12 C -0.553 4.553 13 H 0.075 0.925 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.003 4.003 21 C -0.275 4.275 22 C -0.176 4.176 23 C -0.168 4.168 24 C -0.372 4.372 25 S 0.420 5.580 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.102 -0.062 14.807 17.925 hybrid contribution 1.261 0.950 -0.267 1.601 sum -8.842 0.887 14.540 17.040 Atomic orbital electron populations 1.21790 0.91735 1.03160 1.03023 1.19874 0.97599 0.99827 0.89485 0.87353 1.20249 0.78783 0.87027 0.84221 1.90693 1.47487 1.18242 1.85038 1.48246 1.65787 1.11298 1.07799 1.21825 0.98400 0.81007 1.00401 1.22013 0.97425 0.98092 0.99858 1.21627 1.00973 0.99247 0.93166 1.18891 0.92437 0.91513 0.95122 0.95310 1.21072 1.19733 1.11996 1.02470 0.92493 1.24930 0.95715 0.94951 0.98174 1.69869 1.24183 1.21361 1.37349 0.86581 0.77497 0.79888 0.83980 1.20686 1.21233 1.19846 1.21917 0.98713 0.96943 0.82730 1.24020 1.05590 0.97804 1.00043 1.20048 1.00945 1.01572 0.94990 1.20026 1.03166 0.93262 1.00364 1.25753 1.07410 1.01399 1.02595 1.84376 1.49773 1.09456 1.14424 0.91135 0.91150 0.91886 0.91810 0.91069 0.92396 0.92372 0.94571 0.88617 0.92978 0.90265 0.92685 0.84617 0.84765 0.82337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.96 37.16 0.33 -1.17 16 2 C -0.04 -0.60 2.25 -92.93 -0.21 -0.81 16 3 H 0.11 1.27 6.35 -51.93 -0.33 0.94 16 4 C 0.51 9.15 6.85 -10.99 -0.08 9.07 16 5 O -0.54 -11.48 14.42 5.55 0.08 -11.40 16 6 N -0.60 -10.89 2.98 -173.02 -0.52 -11.40 16 7 C 0.11 1.59 5.69 -3.71 -0.02 1.57 16 8 C -0.14 -2.35 6.08 -26.61 -0.16 -2.52 16 9 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 10 C 0.04 0.97 2.24 -91.87 -0.21 0.76 16 11 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.51 -13.91 8.56 -34.44 -0.29 -14.21 16 13 H 0.06 1.52 7.75 -52.48 -0.41 1.12 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -24.93 11.31 55.43 0.63 -24.30 16 16 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 C 0.12 2.53 5.64 -3.93 -0.02 2.51 16 21 C -0.16 -2.19 4.80 -36.00 -0.17 -2.36 16 22 C -0.14 -1.84 10.01 -41.21 -0.41 -2.25 16 23 C -0.14 -1.61 10.18 -41.21 -0.42 -2.03 16 24 C -0.24 -2.79 11.23 29.04 0.33 -2.46 16 25 S 0.15 2.13 21.89 -107.50 -2.35 -0.22 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.68 7.35 -51.93 -0.38 0.30 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.07 0.83 5.27 -51.93 -0.27 0.56 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.08 1.85 7.00 -51.93 -0.36 1.49 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 331.58 15.07 5.00 5.00 Total: -1.00 -30.46 331.58 -9.60 -40.07 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.85 Total: 1.03 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -1.56 Total: -14.86 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.11 Total: -35.70 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.35 Total: -0.22 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.46 -9.60 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.158 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds