Wall clock time and date at job start Tue Mar 31 2020 08:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47280 * 2 1 4 4 C 1.50701 * 109.47211 * 240.00194 * 2 1 3 5 5 O 1.21286 * 119.99988 * 258.58101 * 4 2 1 6 6 N 1.34775 * 120.00057 * 78.57578 * 4 2 1 7 7 C 1.46928 * 120.62881 * 5.00734 * 6 4 2 8 8 C 1.53197 * 108.77182 * 126.37152 * 7 6 4 9 9 C 1.53038 * 109.31669 * 54.63301 * 8 7 6 10 10 C 1.53039 * 109.53730 * 298.63381 * 9 8 7 11 11 H 1.08997 * 109.49841 * 301.38103 * 10 9 8 12 12 C 1.50700 * 109.49937 * 181.31613 * 10 9 8 13 13 H 1.08003 * 120.00007 * 240.00497 * 12 10 9 14 14 C 1.37878 * 119.99776 * 59.99567 * 12 10 9 15 15 N 1.31508 * 120.00028 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99790 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47059 * 90.00479 * 16 14 12 18 18 H 1.48503 * 109.46809 * 210.00571 * 16 14 12 19 19 H 1.48497 * 109.47159 * 330.00178 * 16 14 12 20 20 C 1.46927 * 120.63275 * 184.73022 * 6 4 2 21 21 C 1.50694 * 109.47217 * 120.00466 * 2 1 3 22 22 C 1.33396 * 125.20200 * 240.00179 * 21 2 1 23 23 C 1.38420 * 114.92233 * 179.75334 * 22 21 2 24 24 C 1.33394 * 114.92088 * 0.24194 * 23 22 21 25 25 S 1.75883 * 109.59327 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47267 * 293.78650 * 1 2 3 27 27 H 1.09005 * 109.47062 * 53.78695 * 1 2 3 28 28 H 1.08996 * 109.47392 * 173.78754 * 1 2 3 29 29 H 1.09008 * 109.58327 * 246.14952 * 7 6 4 30 30 H 1.08994 * 109.58982 * 6.43699 * 7 6 4 31 31 H 1.08999 * 109.49594 * 174.58907 * 8 7 6 32 32 H 1.09003 * 109.49693 * 294.67841 * 8 7 6 33 33 H 1.09001 * 109.46140 * 58.65370 * 9 8 7 34 34 H 1.08994 * 109.46053 * 178.62600 * 9 8 7 35 35 H 0.97002 * 120.00030 * 179.97438 * 15 14 12 36 36 H 1.09007 * 109.58393 * 353.41372 * 20 6 4 37 37 H 1.08995 * 109.59187 * 113.83945 * 20 6 4 38 38 H 1.08005 * 122.53695 * 0.02562 * 22 21 2 39 39 H 1.07996 * 122.54253 * 180.22522 * 23 22 21 40 40 H 1.07995 * 125.20628 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4305 -1.8532 -1.1508 6 7 2.0390 -0.0758 -2.4195 7 6 1.6635 1.3416 -2.5136 8 6 2.7867 2.1030 -3.2246 9 6 3.0746 1.4382 -4.5726 10 6 3.5371 -0.0026 -4.3442 11 1 4.4299 -0.0033 -3.7190 12 6 3.8512 -0.6462 -5.6702 13 1 3.3126 -1.5284 -5.9834 14 6 4.8261 -0.1087 -6.4836 15 7 5.4822 0.9653 -6.1022 16 14 5.2150 -0.9061 -8.1275 17 1 4.3564 -0.3099 -9.1823 18 1 6.6432 -0.6765 -8.4634 19 1 4.9547 -2.3656 -8.0437 20 6 2.4277 -0.7865 -3.6452 21 6 2.0323 -0.7105 1.2303 22 6 2.8024 -0.1647 2.1729 23 6 3.1356 -1.0111 3.2163 24 6 2.6402 -2.2458 3.1186 25 16 1.6961 -2.3873 1.6414 26 1 -0.3633 0.4145 0.9403 27 1 -0.3633 0.6072 -0.8292 28 1 -0.3634 -1.0216 -0.1112 29 1 0.7393 1.4377 -3.0836 30 1 1.5196 1.7488 -1.5128 31 1 2.4799 3.1363 -3.3866 32 1 3.6863 2.0825 -2.6093 33 1 2.1680 1.4369 -5.1778 34 1 3.8566 1.9926 -5.0913 35 1 6.1684 1.3432 -6.6743 36 1 2.7906 -1.7824 -3.3907 37 1 1.5672 -0.8675 -4.3092 38 1 3.1369 0.8613 2.1277 39 1 3.7503 -0.6959 4.0464 40 1 2.7958 -3.0377 3.8362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597909795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:40 Heat of formation + Delta-G solvation = -27.721913 kcal Electronic energy + Delta-G solvation = -21580.052849 eV Core-core repulsion = 18485.303074 eV Total energy + Delta-G solvation = -3094.749775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.33253 -38.89906 -38.17860 -35.56498 -34.71547 -32.94656 -31.90739 -29.47334 -27.17667 -26.57517 -25.32839 -23.84311 -23.28199 -21.44328 -20.24707 -19.92065 -18.55025 -17.96593 -17.86060 -16.74498 -16.48569 -16.27110 -16.00026 -15.16553 -15.03760 -14.69648 -14.58942 -14.28989 -13.92087 -13.67414 -13.59567 -13.53159 -13.16188 -13.11008 -12.87144 -12.72411 -12.61254 -12.51883 -12.38553 -11.88657 -11.85021 -11.59482 -11.49136 -11.25709 -10.87057 -10.65091 -10.42327 -9.54324 -9.47749 -9.24665 -8.11528 -6.26882 0.11825 0.81592 1.24345 1.39747 1.41163 1.51105 1.63721 1.85135 2.17946 2.43419 3.14950 3.49544 3.64113 3.98474 4.08540 4.25366 4.26731 4.31565 4.36058 4.54928 4.61281 4.67595 4.72715 4.81187 4.84716 4.85295 4.88396 4.98230 5.13264 5.18069 5.25005 5.28750 5.41921 5.48364 5.57017 5.60631 5.64531 5.93108 6.14316 6.33976 6.56425 6.82815 7.21315 7.41417 8.92046 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.025285 B = 0.003891 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.105311 B = 7194.837534 C = 7552.512352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.034 4.034 3 H 0.134 0.866 4 C 0.503 3.497 5 O -0.581 6.581 6 N -0.604 5.604 7 C 0.107 3.893 8 C -0.129 4.129 9 C -0.105 4.105 10 C 0.041 3.959 11 H -0.018 1.018 12 C -0.539 4.539 13 H 0.051 0.949 14 C 0.018 3.982 15 N -0.913 5.913 16 Si 0.954 3.046 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.131 3.869 21 C -0.178 4.178 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.229 4.229 25 S 0.099 5.901 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.261 0.739 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.158 0.842 39 H 0.163 0.837 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.846 3.280 16.833 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.057 4.057 3 H 0.151 0.849 4 C 0.292 3.708 5 O -0.461 6.461 6 N -0.335 5.335 7 C -0.015 4.015 8 C -0.167 4.167 9 C -0.144 4.144 10 C 0.022 3.978 11 H 0.000 1.000 12 C -0.578 4.578 13 H 0.069 0.931 14 C -0.181 4.181 15 N -0.552 5.552 16 Si 0.780 3.220 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.198 1.198 20 C 0.009 3.991 21 C -0.296 4.296 22 C -0.174 4.174 23 C -0.174 4.174 24 C -0.365 4.365 25 S 0.364 5.636 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.133 0.867 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.176 0.824 39 H 0.180 0.820 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.337 1.615 16.134 19.785 hybrid contribution 1.712 0.409 -0.622 1.867 sum -9.625 2.024 15.512 18.367 Atomic orbital electron populations 1.21818 0.89564 1.02811 1.05042 1.19909 0.99224 1.00015 0.86549 0.84852 1.21170 0.77724 0.86765 0.85167 1.90672 1.49224 1.20430 1.85772 1.48307 1.65709 1.12665 1.06804 1.22091 0.97900 0.78471 1.03001 1.21925 0.98053 0.99907 0.96774 1.21416 0.99694 0.97310 0.95950 1.18789 0.91703 0.93768 0.93543 0.99980 1.21444 1.20257 1.12169 1.03882 0.93057 1.25676 0.95558 0.95440 1.01456 1.70007 1.24438 1.22296 1.38445 0.85613 0.77379 0.78902 0.80116 1.19515 1.20927 1.19783 1.21439 0.97810 0.95491 0.84380 1.24170 1.07064 0.97432 1.00916 1.20432 0.99621 1.02713 0.94609 1.20400 1.03121 0.92955 1.00933 1.26054 1.06401 1.02335 1.01662 1.84562 1.51392 1.11060 1.16602 0.88745 0.89440 0.93483 0.89523 0.86733 0.88966 0.93914 0.94256 0.92042 0.92939 0.93211 0.91915 0.82441 0.81982 0.80025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.96 71.98 0.64 -1.86 16 2 C -0.03 -0.84 2.25 -12.29 -0.03 -0.87 16 3 H 0.13 2.55 6.35 -2.39 -0.02 2.53 16 4 C 0.50 17.76 6.85 87.66 0.60 18.36 16 5 O -0.58 -25.59 14.42 -3.05 -0.04 -25.64 16 6 N -0.60 -21.45 2.98 -819.70 -2.44 -23.89 16 7 C 0.11 2.83 5.69 86.36 0.49 3.32 16 8 C -0.13 -4.21 6.08 30.67 0.19 -4.03 16 9 C -0.11 -4.70 4.96 30.62 0.15 -4.55 16 10 C 0.04 2.10 2.24 -11.60 -0.03 2.07 16 11 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 12 C -0.54 -30.21 8.56 25.60 0.22 -29.99 16 13 H 0.05 2.85 7.75 -2.91 -0.02 2.82 16 14 C 0.02 1.00 5.30 84.66 0.45 1.44 16 15 N -0.91 -52.56 11.31 21.45 0.24 -52.32 16 16 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 C 0.13 5.82 5.64 86.22 0.49 6.30 16 21 C -0.18 -4.69 4.80 24.59 0.12 -4.57 16 22 C -0.14 -3.24 10.01 21.22 0.21 -3.03 16 23 C -0.14 -2.99 10.18 21.22 0.22 -2.77 16 24 C -0.23 -5.04 11.23 66.72 0.75 -4.29 16 25 S 0.10 2.72 21.89 -56.49 -1.24 1.49 16 26 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 27 H 0.09 1.32 7.35 -2.38 -0.02 1.31 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.11 2.10 5.27 -2.39 -0.01 2.08 16 31 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 3.17 6.04 -2.39 -0.01 3.16 16 35 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 36 H 0.05 2.46 7.00 -2.38 -0.02 2.44 16 37 H 0.06 2.64 8.14 -2.39 -0.02 2.63 16 38 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 39 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -70.55 331.58 4.04 -66.50 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 1.03 Total: 12.37 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 4.47 Total: -24.46 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -2.20 Total: -76.21 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.04 Total: -25.64 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.24 Total: 1.49 kcal Total: -70.55 4.04 -66.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.780 kcal (2) G-P(sol) polarization free energy of solvation -70.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds