Wall clock time and date at job start Tue Mar 31 2020 08:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47087 * 2 1 4 4 C 1.50699 * 109.46958 * 239.99779 * 2 1 3 5 5 O 1.21285 * 120.00147 * 258.60922 * 4 2 1 6 6 N 1.34775 * 120.00018 * 78.61625 * 4 2 1 7 7 C 1.46924 * 120.63484 * 184.71601 * 6 4 2 8 8 C 1.52756 * 109.01217 * 233.58551 * 7 6 4 9 9 C 1.53045 * 109.38198 * 305.58588 * 8 7 6 10 10 C 1.53033 * 109.53646 * 61.24090 * 9 8 7 11 11 H 1.08999 * 109.50289 * 58.58370 * 10 9 8 12 12 C 1.50704 * 109.49877 * 178.68583 * 10 9 8 13 13 H 1.07998 * 120.00596 * 119.83553 * 12 10 9 14 14 C 1.37875 * 119.99728 * 299.83975 * 12 10 9 15 15 N 1.31523 * 119.99822 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00292 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47566 * 89.99340 * 16 14 12 18 18 H 1.48495 * 109.47316 * 210.00002 * 16 14 12 19 19 H 1.48507 * 109.46777 * 329.99730 * 16 14 12 20 20 C 1.46925 * 120.62993 * 4.99490 * 6 4 2 21 21 C 1.50696 * 109.46925 * 120.00030 * 2 1 3 22 22 C 1.33397 * 125.20202 * 239.71766 * 21 2 1 23 23 C 1.38418 * 114.92130 * 180.26844 * 22 21 2 24 24 C 1.33390 * 114.92437 * 0.02562 * 23 22 21 25 25 S 1.75887 * 125.20548 * 60.02629 * 21 2 1 26 26 H 1.08999 * 109.47207 * 53.79189 * 1 2 3 27 27 H 1.09004 * 109.47262 * 173.78768 * 1 2 3 28 28 H 1.09001 * 109.47210 * 293.78776 * 1 2 3 29 29 H 1.09006 * 109.57979 * 353.42096 * 7 6 4 30 30 H 1.08998 * 109.58668 * 113.83681 * 7 6 4 31 31 H 1.08995 * 109.56471 * 185.54878 * 8 7 6 32 32 H 1.09007 * 109.38975 * 65.51068 * 8 7 6 33 33 H 1.08999 * 109.45650 * 301.21834 * 9 8 7 34 34 H 1.08994 * 109.45906 * 181.26274 * 9 8 7 35 35 H 0.97003 * 119.99414 * 179.97438 * 15 14 12 36 36 H 1.09001 * 109.58706 * 246.15525 * 20 6 4 37 37 H 1.09001 * 109.59018 * 6.44007 * 20 6 4 38 38 H 1.07999 * 122.53502 * 0.24170 * 22 21 2 39 39 H 1.07998 * 122.53853 * 180.02562 * 23 22 21 40 40 H 1.07993 * 125.20612 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.4300 -1.8535 -1.1509 6 7 2.0397 -0.0756 -2.4193 7 6 2.4286 -0.7862 -3.6450 8 6 3.5385 -0.0028 -4.3435 9 6 3.0766 1.4383 -4.5718 10 6 2.7886 2.1030 -3.2237 11 1 3.6879 2.0819 -2.6081 12 6 2.3649 3.5318 -3.4477 13 1 1.3922 3.8648 -3.1172 14 6 3.2191 4.4139 -4.0748 15 7 4.4039 4.0085 -4.4770 16 14 2.6944 6.1851 -4.3518 17 1 3.0989 7.0097 -3.1849 18 1 3.3475 6.7089 -5.5783 19 1 1.2193 6.2449 -4.5125 20 6 1.6648 1.3419 -2.5133 21 6 2.0323 -0.7104 1.2304 22 6 2.8068 -0.1661 2.1703 23 6 3.1481 -1.0154 3.2087 24 6 2.6512 -2.2495 3.1120 25 16 1.6933 -2.3862 1.6432 26 1 -0.3633 0.6071 -0.8292 27 1 -0.3634 -1.0217 -0.1112 28 1 -0.3634 0.4145 0.9404 29 1 2.7909 -1.7823 -3.3905 30 1 1.5682 -0.8668 -4.3093 31 1 3.7658 -0.4682 -5.3025 32 1 4.4311 -0.0039 -3.7179 33 1 2.1703 1.4375 -5.1773 34 1 3.8589 1.9926 -5.0902 35 1 5.0047 4.6290 -4.9185 36 1 0.7409 1.4384 -3.0836 37 1 1.5207 1.7490 -1.5125 38 1 3.1425 0.8593 2.1242 39 1 3.7696 -0.7025 4.0347 40 1 2.8123 -3.0433 3.8263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597909797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:45 Heat of formation + Delta-G solvation = -12.602140 kcal Electronic energy + Delta-G solvation = -21685.151243 eV Core-core repulsion = 18591.057111 eV Total energy + Delta-G solvation = -3094.094132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.94402 -37.73848 -36.73827 -33.92589 -33.33776 -31.41734 -30.13383 -28.45911 -25.41587 -25.02068 -24.19090 -22.81927 -21.48175 -19.94128 -19.22508 -18.46646 -16.92131 -16.71471 -16.15547 -15.37640 -15.24321 -14.73797 -14.56285 -13.80392 -13.54573 -13.30131 -13.09886 -12.77342 -12.69956 -12.54108 -12.27197 -12.14416 -11.97862 -11.88783 -11.53364 -11.30323 -11.04088 -10.90314 -10.79283 -10.49327 -10.31124 -10.00836 -9.79675 -9.67687 -9.24273 -8.91223 -8.51214 -8.45759 -8.17735 -7.94735 -6.09145 -4.17941 1.13003 1.82604 2.23073 2.83667 3.01074 3.24045 3.31769 3.33360 3.53215 4.34803 4.65321 4.85433 5.12646 5.16534 5.20233 5.28998 5.55391 5.66158 5.69399 5.71719 5.77286 5.78021 5.89608 6.02623 6.09417 6.20676 6.23134 6.29165 6.40839 6.50869 6.52757 6.59976 6.75196 6.94000 7.12729 7.29479 7.61310 7.83376 7.90004 8.01950 8.28068 8.57450 8.85795 9.47908 10.96043 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021227 B = 0.004297 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.785046 B = 6514.679518 C = 7128.137130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 H 0.116 0.884 4 C 0.516 3.484 5 O -0.549 6.549 6 N -0.599 5.599 7 C 0.115 3.885 8 C -0.135 4.135 9 C -0.112 4.112 10 C 0.039 3.961 11 H 0.030 0.970 12 C -0.519 4.519 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.886 5.886 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.108 3.892 21 C -0.152 4.152 22 C -0.145 4.145 23 C -0.135 4.135 24 C -0.236 4.236 25 S 0.146 5.854 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.095 0.905 35 H 0.261 0.739 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 -8.766 9.807 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 H 0.133 0.867 4 C 0.303 3.697 5 O -0.428 6.428 6 N -0.330 5.330 7 C -0.007 4.007 8 C -0.173 4.173 9 C -0.150 4.150 10 C 0.020 3.980 11 H 0.048 0.952 12 C -0.557 4.557 13 H 0.076 0.924 14 C -0.137 4.137 15 N -0.524 5.524 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.013 4.013 21 C -0.270 4.270 22 C -0.175 4.175 23 C -0.166 4.166 24 C -0.372 4.372 25 S 0.411 5.589 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.265 -10.486 9.070 15.214 hybrid contribution 0.801 2.284 0.421 2.457 sum -5.464 -8.202 9.491 13.682 Atomic orbital electron populations 1.21786 0.91679 1.02853 1.03363 1.19874 0.97684 1.00295 0.89001 0.86662 1.20283 0.78360 0.86707 0.84396 1.90655 1.48354 1.18392 1.85363 1.48236 1.65566 1.12652 1.06576 1.21485 0.97814 0.96219 0.85172 1.21920 0.97670 0.98681 0.99004 1.21618 1.01349 0.91745 1.00255 1.18982 0.93034 0.93241 0.92737 0.95193 1.21043 1.01860 0.93993 1.38852 0.92419 1.24941 0.94822 0.98625 0.95309 1.69884 1.07734 1.35067 1.39724 0.86593 0.78779 0.84897 0.77724 1.20652 1.21230 1.19853 1.22230 0.99954 0.77868 1.01260 1.24034 1.05330 0.97568 1.00095 1.20111 1.00734 1.01724 0.94953 1.20041 1.03025 0.93178 1.00368 1.25718 1.07340 1.01432 1.02754 1.84276 1.49522 1.09905 1.15223 0.90876 0.92153 0.91075 0.90256 0.92298 0.92515 0.92494 0.94567 0.88696 0.92868 0.92169 0.90998 0.84373 0.84754 0.82408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.96 37.16 0.33 -1.38 16 2 C -0.05 -0.68 2.25 -92.93 -0.21 -0.89 16 3 H 0.12 1.68 6.34 -51.93 -0.33 1.35 16 4 C 0.52 9.25 6.85 -10.99 -0.08 9.18 16 5 O -0.55 -11.07 14.42 5.55 0.08 -10.99 16 6 N -0.60 -10.87 2.98 -173.03 -0.52 -11.39 16 7 C 0.12 2.04 6.41 -3.94 -0.03 2.01 16 8 C -0.13 -2.55 6.06 -26.83 -0.16 -2.71 16 9 C -0.11 -2.47 4.96 -26.69 -0.13 -2.60 16 10 C 0.04 0.90 2.25 -91.65 -0.21 0.69 16 11 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 12 C -0.52 -13.08 8.56 -34.44 -0.29 -13.37 16 13 H 0.06 1.41 7.74 -52.49 -0.41 1.00 16 14 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 15 N -0.89 -24.11 11.32 55.43 0.63 -23.48 16 16 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 C 0.11 2.03 4.91 -3.71 -0.02 2.01 16 21 C -0.15 -2.25 4.80 -36.00 -0.17 -2.42 16 22 C -0.14 -1.99 10.01 -41.21 -0.41 -2.40 16 23 C -0.13 -1.66 10.18 -41.21 -0.42 -2.08 16 24 C -0.24 -2.87 11.23 29.04 0.33 -2.54 16 25 S 0.15 2.03 21.90 -107.50 -2.35 -0.32 16 26 H 0.07 0.87 7.36 -51.93 -0.38 0.49 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.41 7.00 -51.93 -0.36 1.05 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 2.39 6.05 -51.93 -0.31 2.07 16 35 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.24 5.27 -51.93 -0.27 0.96 16 38 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 331.62 15.07 5.00 5.00 Total: -1.00 -28.52 331.62 -9.60 -38.13 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.85 Total: 2.84 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.57 Total: -14.90 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.11 Total: -34.87 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.35 Total: -0.32 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.52 -9.60 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.525 kcal (2) G-P(sol) polarization free energy of solvation -28.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds