Wall clock time and date at job start Tue Mar 31 2020 08:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47087 * 2 1 4 4 C 1.50699 * 109.46958 * 239.99779 * 2 1 3 5 5 O 1.21285 * 120.00147 * 258.60922 * 4 2 1 6 6 N 1.34775 * 120.00018 * 78.61625 * 4 2 1 7 7 C 1.46924 * 120.63484 * 184.71601 * 6 4 2 8 8 C 1.52756 * 109.01217 * 233.58551 * 7 6 4 9 9 C 1.53045 * 109.38198 * 305.58588 * 8 7 6 10 10 C 1.53033 * 109.53646 * 61.24090 * 9 8 7 11 11 H 1.08999 * 109.50289 * 58.58370 * 10 9 8 12 12 C 1.50704 * 109.49877 * 178.68583 * 10 9 8 13 13 H 1.07998 * 120.00596 * 119.83553 * 12 10 9 14 14 C 1.37875 * 119.99728 * 299.83975 * 12 10 9 15 15 N 1.31523 * 119.99822 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00292 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47566 * 89.99340 * 16 14 12 18 18 H 1.48495 * 109.47316 * 210.00002 * 16 14 12 19 19 H 1.48507 * 109.46777 * 329.99730 * 16 14 12 20 20 C 1.46925 * 120.62993 * 4.99490 * 6 4 2 21 21 C 1.50696 * 109.46925 * 120.00030 * 2 1 3 22 22 C 1.33397 * 125.20202 * 239.71766 * 21 2 1 23 23 C 1.38418 * 114.92130 * 180.26844 * 22 21 2 24 24 C 1.33390 * 114.92437 * 0.02562 * 23 22 21 25 25 S 1.75887 * 125.20548 * 60.02629 * 21 2 1 26 26 H 1.08999 * 109.47207 * 53.79189 * 1 2 3 27 27 H 1.09004 * 109.47262 * 173.78768 * 1 2 3 28 28 H 1.09001 * 109.47210 * 293.78776 * 1 2 3 29 29 H 1.09006 * 109.57979 * 353.42096 * 7 6 4 30 30 H 1.08998 * 109.58668 * 113.83681 * 7 6 4 31 31 H 1.08995 * 109.56471 * 185.54878 * 8 7 6 32 32 H 1.09007 * 109.38975 * 65.51068 * 8 7 6 33 33 H 1.08999 * 109.45650 * 301.21834 * 9 8 7 34 34 H 1.08994 * 109.45906 * 181.26274 * 9 8 7 35 35 H 0.97003 * 119.99414 * 179.97438 * 15 14 12 36 36 H 1.09001 * 109.58706 * 246.15525 * 20 6 4 37 37 H 1.09001 * 109.59018 * 6.44007 * 20 6 4 38 38 H 1.07999 * 122.53502 * 0.24170 * 22 21 2 39 39 H 1.07998 * 122.53853 * 180.02562 * 23 22 21 40 40 H 1.07993 * 125.20612 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.4300 -1.8535 -1.1509 6 7 2.0397 -0.0756 -2.4193 7 6 2.4286 -0.7862 -3.6450 8 6 3.5385 -0.0028 -4.3435 9 6 3.0766 1.4383 -4.5718 10 6 2.7886 2.1030 -3.2237 11 1 3.6879 2.0819 -2.6081 12 6 2.3649 3.5318 -3.4477 13 1 1.3922 3.8648 -3.1172 14 6 3.2191 4.4139 -4.0748 15 7 4.4039 4.0085 -4.4770 16 14 2.6944 6.1851 -4.3518 17 1 3.0989 7.0097 -3.1849 18 1 3.3475 6.7089 -5.5783 19 1 1.2193 6.2449 -4.5125 20 6 1.6648 1.3419 -2.5133 21 6 2.0323 -0.7104 1.2304 22 6 2.8068 -0.1661 2.1703 23 6 3.1481 -1.0154 3.2087 24 6 2.6512 -2.2495 3.1120 25 16 1.6933 -2.3862 1.6432 26 1 -0.3633 0.6071 -0.8292 27 1 -0.3634 -1.0217 -0.1112 28 1 -0.3634 0.4145 0.9404 29 1 2.7909 -1.7823 -3.3905 30 1 1.5682 -0.8668 -4.3093 31 1 3.7658 -0.4682 -5.3025 32 1 4.4311 -0.0039 -3.7179 33 1 2.1703 1.4375 -5.1773 34 1 3.8589 1.9926 -5.0902 35 1 5.0047 4.6290 -4.9185 36 1 0.7409 1.4384 -3.0836 37 1 1.5207 1.7490 -1.5125 38 1 3.1425 0.8593 2.1242 39 1 3.7696 -0.7025 4.0347 40 1 2.8123 -3.0433 3.8263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597909797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:44 Heat of formation + Delta-G solvation = -26.632777 kcal Electronic energy + Delta-G solvation = -21685.759658 eV Core-core repulsion = 18591.057111 eV Total energy + Delta-G solvation = -3094.702547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35237 -38.90430 -38.19997 -35.22951 -35.02769 -32.98826 -31.85875 -29.46568 -27.07215 -26.58376 -25.36955 -24.09267 -23.03572 -21.49146 -20.25349 -19.92960 -18.52272 -17.92229 -17.80620 -16.79236 -16.45391 -16.27009 -16.03696 -15.22429 -15.02771 -14.66353 -14.61669 -14.26769 -14.01976 -13.63139 -13.58561 -13.43624 -13.21775 -13.11503 -12.84716 -12.72639 -12.54097 -12.53589 -12.38207 -11.94880 -11.80805 -11.57634 -11.51294 -11.30866 -10.81031 -10.64736 -10.40252 -9.54901 -9.48610 -9.23273 -8.06269 -6.21464 0.10990 0.80632 1.22414 1.45621 1.47699 1.56173 1.59955 1.84314 2.16514 2.47423 3.21823 3.51078 3.61931 4.03511 4.09186 4.20794 4.26589 4.28419 4.32736 4.54994 4.55879 4.67008 4.71795 4.78781 4.80728 4.83363 4.88144 4.96928 5.09673 5.15930 5.24676 5.27501 5.42536 5.43447 5.61223 5.63866 5.65887 5.94306 6.10687 6.34184 6.50069 6.90668 7.16200 7.47822 8.97682 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021227 B = 0.004297 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.785046 B = 6514.679518 C = 7128.137130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.042 4.042 3 H 0.116 0.884 4 C 0.512 3.488 5 O -0.573 6.573 6 N -0.603 5.603 7 C 0.117 3.883 8 C -0.124 4.124 9 C -0.105 4.105 10 C 0.037 3.963 11 H -0.010 1.010 12 C -0.529 4.529 13 H 0.066 0.934 14 C 0.015 3.985 15 N -0.918 5.918 16 Si 0.953 3.047 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.263 1.263 20 C 0.122 3.878 21 C -0.176 4.176 22 C -0.148 4.148 23 C -0.144 4.144 24 C -0.226 4.226 25 S 0.117 5.883 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.259 0.741 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.147 0.853 39 H 0.161 0.839 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 -8.762 10.927 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.065 4.065 3 H 0.134 0.866 4 C 0.300 3.700 5 O -0.453 6.453 6 N -0.334 5.334 7 C -0.005 4.005 8 C -0.163 4.163 9 C -0.144 4.144 10 C 0.018 3.982 11 H 0.008 0.992 12 C -0.567 4.567 13 H 0.084 0.916 14 C -0.184 4.184 15 N -0.557 5.557 16 Si 0.779 3.221 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.187 1.187 20 C 0.000 4.000 21 C -0.294 4.294 22 C -0.179 4.179 23 C -0.174 4.174 24 C -0.361 4.361 25 S 0.382 5.618 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.164 0.836 39 H 0.178 0.822 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.611 -10.483 10.198 16.487 hybrid contribution 1.282 2.248 0.115 2.591 sum -6.329 -8.234 10.313 14.636 Atomic orbital electron populations 1.21782 0.89715 1.02951 1.04630 1.19875 0.99259 0.99696 0.87622 0.86633 1.20849 0.77626 0.86559 0.84957 1.90637 1.49360 1.19584 1.85760 1.48288 1.65682 1.12380 1.07042 1.21496 0.97972 0.95707 0.85328 1.21799 0.97294 0.97182 0.99992 1.21443 1.00322 0.93150 0.99453 1.18917 0.92915 0.93447 0.92961 0.99162 1.21450 1.02034 0.95156 1.38072 0.91586 1.25705 0.94885 1.02403 0.95387 1.70042 1.08810 1.36134 1.40716 0.85632 0.78815 0.80399 0.77251 1.20442 1.21628 1.18692 1.22009 0.98441 0.77743 1.01822 1.24114 1.06718 0.98013 1.00588 1.20416 0.99983 1.02437 0.95096 1.20340 1.03310 0.93008 1.00756 1.26065 1.05945 1.02167 1.01972 1.84330 1.50599 1.10037 1.16880 0.90297 0.92486 0.89222 0.90275 0.90193 0.90275 0.94665 0.94125 0.92130 0.93211 0.90899 0.89420 0.83566 0.82152 0.79630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.96 71.98 0.64 -2.40 16 2 C -0.04 -1.20 2.25 -12.29 -0.03 -1.22 16 3 H 0.12 3.25 6.34 -2.39 -0.02 3.24 16 4 C 0.51 18.00 6.85 87.66 0.60 18.60 16 5 O -0.57 -22.92 14.42 -3.05 -0.04 -22.96 16 6 N -0.60 -21.36 2.98 -819.73 -2.44 -23.80 16 7 C 0.12 4.01 6.41 86.22 0.55 4.56 16 8 C -0.12 -4.71 6.06 30.53 0.19 -4.52 16 9 C -0.11 -4.71 4.96 30.62 0.15 -4.55 16 10 C 0.04 1.70 2.25 -11.46 -0.03 1.68 16 11 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 12 C -0.53 -26.53 8.56 25.60 0.22 -26.31 16 13 H 0.07 3.13 7.74 -2.91 -0.02 3.11 16 14 C 0.02 0.79 5.30 84.65 0.45 1.24 16 15 N -0.92 -51.13 11.32 21.45 0.24 -50.89 16 16 Si 0.95 41.17 29.54 68.60 2.03 43.20 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 20 C 0.12 4.42 4.91 86.37 0.42 4.84 16 21 C -0.18 -5.04 4.80 24.59 0.12 -4.92 16 22 C -0.15 -3.85 10.01 21.22 0.21 -3.64 16 23 C -0.14 -3.21 10.18 21.22 0.22 -2.99 16 24 C -0.23 -4.96 11.23 66.72 0.75 -4.22 16 25 S 0.12 3.14 21.90 -56.49 -1.24 1.90 16 26 H 0.08 1.69 7.36 -2.39 -0.02 1.68 16 27 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 2.74 7.00 -2.38 -0.02 2.73 16 30 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 3.14 6.05 -2.39 -0.01 3.12 16 35 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 36 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.09 2.89 5.27 -2.39 -0.01 2.88 16 38 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 39 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 40 H 0.19 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -61.72 331.62 4.04 -57.67 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 1.03 Total: 18.75 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 4.47 Total: -23.86 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -2.20 Total: -74.69 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.04 Total: -22.96 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.24 Total: 1.90 kcal Total: -61.72 4.04 -57.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.042 kcal (2) G-P(sol) polarization free energy of solvation -61.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds