Wall clock time and date at job start Tue Mar 31 2020 08:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47217 * 2 1 4 4 C 1.50698 * 109.46784 * 119.99749 * 2 1 3 5 5 O 1.21278 * 120.00178 * 100.52569 * 4 2 1 6 6 N 1.34779 * 120.00074 * 280.51444 * 4 2 1 7 7 C 1.46931 * 120.63225 * 175.81714 * 6 4 2 8 8 C 1.53196 * 108.77285 * 126.39292 * 7 6 4 9 9 C 1.53037 * 109.31086 * 54.64202 * 8 7 6 10 10 C 1.53050 * 109.53847 * 298.63171 * 9 8 7 11 11 H 1.09005 * 109.49048 * 301.38627 * 10 9 8 12 12 C 1.50693 * 109.49796 * 181.31877 * 10 9 8 13 13 H 1.08003 * 119.99942 * 240.05798 * 12 10 9 14 14 C 1.37880 * 120.00226 * 59.79242 * 12 10 9 15 15 N 1.31517 * 119.99902 * 0.26911 * 14 12 10 16 16 Si 1.86794 * 120.00293 * 180.27480 * 14 12 10 17 17 H 1.48503 * 109.46934 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47498 * 119.99668 * 16 14 12 19 19 H 1.48500 * 109.47213 * 239.99657 * 16 14 12 20 20 C 1.46933 * 120.60212 * 355.80450 * 6 4 2 21 21 C 1.50694 * 109.47304 * 239.99767 * 2 1 3 22 22 C 1.33390 * 125.20425 * 119.71562 * 21 2 1 23 23 C 1.38423 * 114.92025 * 179.85751 * 22 21 2 24 24 C 1.33388 * 114.92127 * 0.43713 * 23 22 21 25 25 S 1.75884 * 125.20086 * 300.02542 * 21 2 1 26 26 H 1.08998 * 109.46835 * 303.33236 * 1 2 3 27 27 H 1.09002 * 109.46874 * 63.32576 * 1 2 3 28 28 H 1.08993 * 109.47172 * 183.32916 * 1 2 3 29 29 H 1.09003 * 109.58099 * 6.61218 * 7 6 4 30 30 H 1.08997 * 109.70596 * 246.25240 * 7 6 4 31 31 H 1.08997 * 109.49470 * 294.68782 * 8 7 6 32 32 H 1.09004 * 109.49290 * 174.58858 * 8 7 6 33 33 H 1.09005 * 109.46191 * 178.61637 * 9 8 7 34 34 H 1.09001 * 109.46384 * 58.64824 * 9 8 7 35 35 H 0.96997 * 119.99844 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.56452 * 113.80669 * 20 6 4 37 37 H 1.08997 * 109.61885 * 353.37176 * 20 6 4 38 38 H 1.07995 * 122.53866 * 0.02562 * 22 21 2 39 39 H 1.07996 * 122.54086 * 180.20014 * 23 22 21 40 40 H 1.08002 * 125.20249 * 179.74565 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.4153 -1.8585 1.1540 6 7 2.0561 -0.0696 2.4160 7 6 2.4562 -0.7758 3.6408 8 6 3.5807 0.0127 4.3195 9 6 3.1216 1.4548 4.5470 10 6 2.8153 2.1130 3.1997 11 1 3.7064 2.0895 2.5724 12 6 2.3944 3.5427 3.4225 13 1 1.4179 3.8744 3.1020 14 6 3.2540 4.4261 4.0406 15 7 4.4432 4.0222 4.4308 16 14 2.7294 6.1963 4.3237 17 1 1.3557 6.3960 3.7960 18 1 2.7489 6.4918 5.7789 19 1 3.6667 7.1088 3.6208 20 6 1.6825 1.3485 2.5075 21 6 2.0324 -0.7104 -1.2304 22 6 2.7981 -0.1631 -2.1756 23 6 3.1393 -1.0124 -3.2141 24 6 2.6430 -2.2467 -3.1169 25 16 1.6924 -2.3859 -1.6436 26 1 -0.3633 0.5647 0.8586 27 1 -0.3633 0.4614 -0.9183 28 1 -0.3633 -1.0259 0.0597 29 1 2.8119 -1.7745 3.3870 30 1 1.6041 -0.8520 4.3162 31 1 4.4644 0.0085 3.6814 32 1 3.8210 -0.4481 5.2777 33 1 3.9109 2.0117 5.0521 34 1 2.2235 1.4569 5.1647 35 1 5.0477 4.6436 4.8659 36 1 0.7660 1.4477 3.0891 37 1 1.5280 1.7515 1.5066 38 1 3.1292 0.8639 -2.1324 39 1 3.7570 -0.6983 -4.0423 40 1 2.8005 -3.0393 -3.8334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597909798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:49 Heat of formation + Delta-G solvation = -12.559055 kcal Electronic energy + Delta-G solvation = -21686.119451 eV Core-core repulsion = 18592.027187 eV Total energy + Delta-G solvation = -3094.092264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.94056 -37.73471 -36.73328 -33.92159 -33.34016 -31.40352 -30.12606 -28.45817 -25.42009 -25.02132 -24.18815 -22.81445 -21.48512 -19.93711 -19.22609 -18.46984 -16.92101 -16.71379 -16.15858 -15.37394 -15.23953 -14.74350 -14.55707 -13.79470 -13.54729 -13.30013 -13.10111 -12.76711 -12.70091 -12.54584 -12.27004 -12.14196 -11.97952 -11.88120 -11.53545 -11.30603 -11.05358 -10.91140 -10.77792 -10.49036 -10.30142 -10.01052 -9.80235 -9.67796 -9.24068 -8.90446 -8.51085 -8.46124 -8.17782 -7.94709 -6.09338 -4.18093 1.13132 1.82648 2.23219 2.83659 3.01249 3.23032 3.31972 3.34164 3.53174 4.34696 4.65591 4.85371 5.12749 5.16630 5.20059 5.29149 5.55288 5.66252 5.69735 5.71847 5.76390 5.77635 5.89845 6.02215 6.09328 6.20540 6.23246 6.29215 6.40882 6.50921 6.52763 6.60050 6.75034 6.93878 7.12798 7.29500 7.61420 7.83274 7.89970 8.02086 8.28095 8.57479 8.85891 9.47809 10.95802 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021174 B = 0.004303 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.057604 B = 6506.279864 C = 7118.600376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 H 0.116 0.884 4 C 0.516 3.484 5 O -0.549 6.549 6 N -0.599 5.599 7 C 0.115 3.885 8 C -0.134 4.134 9 C -0.112 4.112 10 C 0.039 3.961 11 H 0.030 0.970 12 C -0.518 4.518 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.886 5.886 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.108 3.892 21 C -0.152 4.152 22 C -0.145 4.145 23 C -0.135 4.135 24 C -0.237 4.237 25 S 0.146 5.854 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.035 0.965 35 H 0.261 0.739 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.849 -8.773 -9.730 14.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 H 0.133 0.867 4 C 0.302 3.698 5 O -0.428 6.428 6 N -0.330 5.330 7 C -0.007 4.007 8 C -0.172 4.172 9 C -0.150 4.150 10 C 0.020 3.980 11 H 0.048 0.952 12 C -0.557 4.557 13 H 0.076 0.924 14 C -0.137 4.137 15 N -0.524 5.524 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.013 4.013 21 C -0.270 4.270 22 C -0.175 4.175 23 C -0.166 4.166 24 C -0.373 4.373 25 S 0.411 5.589 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.321 -10.495 -8.996 15.200 hybrid contribution 0.802 2.281 -0.405 2.452 sum -5.518 -8.214 -9.401 13.649 Atomic orbital electron populations 1.21786 0.91672 1.02831 1.03379 1.19878 0.97676 1.00301 0.89011 0.86652 1.20284 0.78308 0.86760 0.84399 1.90651 1.48820 1.18025 1.85290 1.48241 1.65377 1.12564 1.06841 1.21574 0.97667 0.96273 0.85218 1.21993 0.97515 0.98628 0.99077 1.21626 1.01449 0.91768 1.00170 1.18990 0.92941 0.93250 0.92857 0.95192 1.21084 1.01467 0.93919 1.39205 0.92363 1.24942 0.94822 0.98643 0.95312 1.69886 1.07354 1.34988 1.40177 0.86540 0.78720 0.84853 0.77907 1.19710 1.21012 1.21017 1.22232 0.99972 0.77853 1.01271 1.24032 1.05415 0.97547 1.00042 1.20111 1.00864 1.01687 0.94866 1.20042 1.03015 0.93169 1.00381 1.25724 1.07383 1.01449 1.02719 1.84282 1.49795 1.09982 1.14835 0.90913 0.91059 0.92139 0.90259 0.92271 0.92473 0.92552 0.88651 0.94580 0.92922 0.92157 0.90965 0.84367 0.84755 0.82409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.96 37.16 0.33 -1.38 16 2 C -0.05 -0.68 2.25 -92.92 -0.21 -0.89 16 3 H 0.12 1.69 6.32 -51.93 -0.33 1.36 16 4 C 0.52 9.25 6.85 -10.99 -0.08 9.18 16 5 O -0.55 -11.06 14.43 5.56 0.08 -10.98 16 6 N -0.60 -10.87 2.97 -172.76 -0.51 -11.39 16 7 C 0.12 2.03 6.44 -3.71 -0.02 2.00 16 8 C -0.13 -2.54 6.08 -26.61 -0.16 -2.70 16 9 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 10 C 0.04 0.89 2.25 -91.65 -0.21 0.68 16 11 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 12 C -0.52 -13.05 8.57 -34.44 -0.30 -13.35 16 13 H 0.06 1.43 7.74 -52.48 -0.41 1.02 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -24.09 11.31 55.43 0.63 -23.46 16 16 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.11 2.03 4.92 -3.70 -0.02 2.01 16 21 C -0.15 -2.25 4.81 -36.01 -0.17 -2.43 16 22 C -0.14 -1.99 10.01 -41.21 -0.41 -2.40 16 23 C -0.13 -1.66 10.18 -41.21 -0.42 -2.08 16 24 C -0.24 -2.87 11.23 29.04 0.33 -2.54 16 25 S 0.15 2.04 21.87 -107.50 -2.35 -0.31 16 26 H 0.07 0.87 7.40 -51.93 -0.38 0.48 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 29 H 0.08 1.41 7.00 -51.93 -0.36 1.04 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 2.40 6.03 -51.93 -0.31 2.09 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.24 5.29 -51.93 -0.27 0.97 16 38 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -28.53 331.63 -9.60 -38.13 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.85 Total: 2.83 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -1.56 Total: -14.92 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.11 Total: -34.85 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.35 Total: -0.31 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.53 -9.60 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.568 kcal (2) G-P(sol) polarization free energy of solvation -28.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds