Wall clock time and date at job start Tue Mar 31 2020 08:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47217 * 2 1 4 4 C 1.50698 * 109.46784 * 119.99749 * 2 1 3 5 5 O 1.21278 * 120.00178 * 100.52569 * 4 2 1 6 6 N 1.34779 * 120.00074 * 280.51444 * 4 2 1 7 7 C 1.46931 * 120.63225 * 175.81714 * 6 4 2 8 8 C 1.53196 * 108.77285 * 126.39292 * 7 6 4 9 9 C 1.53037 * 109.31086 * 54.64202 * 8 7 6 10 10 C 1.53050 * 109.53847 * 298.63171 * 9 8 7 11 11 H 1.09005 * 109.49048 * 301.38627 * 10 9 8 12 12 C 1.50693 * 109.49796 * 181.31877 * 10 9 8 13 13 H 1.08003 * 119.99942 * 240.05798 * 12 10 9 14 14 C 1.37880 * 120.00226 * 59.79242 * 12 10 9 15 15 N 1.31517 * 119.99902 * 0.26911 * 14 12 10 16 16 Si 1.86794 * 120.00293 * 180.27480 * 14 12 10 17 17 H 1.48503 * 109.46934 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47498 * 119.99668 * 16 14 12 19 19 H 1.48500 * 109.47213 * 239.99657 * 16 14 12 20 20 C 1.46933 * 120.60212 * 355.80450 * 6 4 2 21 21 C 1.50694 * 109.47304 * 239.99767 * 2 1 3 22 22 C 1.33390 * 125.20425 * 119.71562 * 21 2 1 23 23 C 1.38423 * 114.92025 * 179.85751 * 22 21 2 24 24 C 1.33388 * 114.92127 * 0.43713 * 23 22 21 25 25 S 1.75884 * 125.20086 * 300.02542 * 21 2 1 26 26 H 1.08998 * 109.46835 * 303.33236 * 1 2 3 27 27 H 1.09002 * 109.46874 * 63.32576 * 1 2 3 28 28 H 1.08993 * 109.47172 * 183.32916 * 1 2 3 29 29 H 1.09003 * 109.58099 * 6.61218 * 7 6 4 30 30 H 1.08997 * 109.70596 * 246.25240 * 7 6 4 31 31 H 1.08997 * 109.49470 * 294.68782 * 8 7 6 32 32 H 1.09004 * 109.49290 * 174.58858 * 8 7 6 33 33 H 1.09005 * 109.46191 * 178.61637 * 9 8 7 34 34 H 1.09001 * 109.46384 * 58.64824 * 9 8 7 35 35 H 0.96997 * 119.99844 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.56452 * 113.80669 * 20 6 4 37 37 H 1.08997 * 109.61885 * 353.37176 * 20 6 4 38 38 H 1.07995 * 122.53866 * 0.02562 * 22 21 2 39 39 H 1.07996 * 122.54086 * 180.20014 * 23 22 21 40 40 H 1.08002 * 125.20249 * 179.74565 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.4153 -1.8585 1.1540 6 7 2.0561 -0.0696 2.4160 7 6 2.4562 -0.7758 3.6408 8 6 3.5807 0.0127 4.3195 9 6 3.1216 1.4548 4.5470 10 6 2.8153 2.1130 3.1997 11 1 3.7064 2.0895 2.5724 12 6 2.3944 3.5427 3.4225 13 1 1.4179 3.8744 3.1020 14 6 3.2540 4.4261 4.0406 15 7 4.4432 4.0222 4.4308 16 14 2.7294 6.1963 4.3237 17 1 1.3557 6.3960 3.7960 18 1 2.7489 6.4918 5.7789 19 1 3.6667 7.1088 3.6208 20 6 1.6825 1.3485 2.5075 21 6 2.0324 -0.7104 -1.2304 22 6 2.7981 -0.1631 -2.1756 23 6 3.1393 -1.0124 -3.2141 24 6 2.6430 -2.2467 -3.1169 25 16 1.6924 -2.3859 -1.6436 26 1 -0.3633 0.5647 0.8586 27 1 -0.3633 0.4614 -0.9183 28 1 -0.3633 -1.0259 0.0597 29 1 2.8119 -1.7745 3.3870 30 1 1.6041 -0.8520 4.3162 31 1 4.4644 0.0085 3.6814 32 1 3.8210 -0.4481 5.2777 33 1 3.9109 2.0117 5.0521 34 1 2.2235 1.4569 5.1647 35 1 5.0477 4.6436 4.8659 36 1 0.7660 1.4477 3.0891 37 1 1.5280 1.7515 1.5066 38 1 3.1292 0.8639 -2.1324 39 1 3.7570 -0.6983 -4.0423 40 1 2.8005 -3.0393 -3.8334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597909798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:48 Heat of formation + Delta-G solvation = -26.581206 kcal Electronic energy + Delta-G solvation = -21686.727497 eV Core-core repulsion = 18592.027187 eV Total energy + Delta-G solvation = -3094.700310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34831 -38.89782 -38.19870 -35.22956 -35.02346 -32.97868 -31.84790 -29.46520 -27.07527 -26.58353 -25.36723 -24.08879 -23.03903 -21.48789 -20.25522 -19.93225 -18.52339 -17.92230 -17.80845 -16.79025 -16.45218 -16.26346 -16.04044 -15.21593 -15.02630 -14.66878 -14.61563 -14.26445 -14.02378 -13.62879 -13.58597 -13.43091 -13.21520 -13.10999 -12.87259 -12.73565 -12.54874 -12.51061 -12.38339 -11.93059 -11.81082 -11.58542 -11.51161 -11.30966 -10.80234 -10.64730 -10.40616 -9.54877 -9.48550 -9.23350 -8.06378 -6.21528 0.11088 0.80600 1.22505 1.44279 1.47727 1.57159 1.60153 1.84401 2.16417 2.47298 3.21684 3.51239 3.61805 4.03706 4.09161 4.21041 4.25901 4.28329 4.33014 4.54733 4.55741 4.66963 4.71892 4.78589 4.80612 4.83395 4.88150 4.96984 5.09643 5.15827 5.24702 5.27390 5.42544 5.43518 5.61230 5.63933 5.66025 5.94336 6.10882 6.34309 6.50002 6.90824 7.16254 7.47771 8.97668 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021174 B = 0.004303 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.057604 B = 6506.279864 C = 7118.600376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.042 4.042 3 H 0.116 0.884 4 C 0.512 3.488 5 O -0.573 6.573 6 N -0.603 5.603 7 C 0.117 3.883 8 C -0.124 4.124 9 C -0.106 4.106 10 C 0.036 3.964 11 H -0.010 1.010 12 C -0.528 4.528 13 H 0.066 0.934 14 C 0.015 3.985 15 N -0.918 5.918 16 Si 0.953 3.047 17 H -0.260 1.260 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.121 3.879 21 C -0.177 4.177 22 C -0.148 4.148 23 C -0.144 4.144 24 C -0.226 4.226 25 S 0.117 5.883 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.259 0.741 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.147 0.853 39 H 0.161 0.839 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.174 -8.775 -10.841 15.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.065 4.065 3 H 0.134 0.866 4 C 0.300 3.700 5 O -0.453 6.453 6 N -0.334 5.334 7 C -0.005 4.005 8 C -0.162 4.162 9 C -0.144 4.144 10 C 0.017 3.983 11 H 0.009 0.991 12 C -0.566 4.566 13 H 0.084 0.916 14 C -0.184 4.184 15 N -0.557 5.557 16 Si 0.779 3.221 17 H -0.184 1.184 18 H -0.211 1.211 19 H -0.213 1.213 20 C 0.000 4.000 21 C -0.295 4.295 22 C -0.179 4.179 23 C -0.174 4.174 24 C -0.362 4.362 25 S 0.382 5.618 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.164 0.836 39 H 0.178 0.822 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.662 -10.497 -10.116 16.469 hybrid contribution 1.283 2.248 -0.101 2.590 sum -6.380 -8.250 -10.217 14.599 Atomic orbital electron populations 1.21784 0.89713 1.02974 1.04607 1.19879 0.99248 0.99697 0.87638 0.86635 1.20848 0.77579 0.86614 0.84955 1.90634 1.49819 1.19207 1.85686 1.48293 1.65497 1.12295 1.07307 1.21584 0.97783 0.95757 0.85402 1.21870 0.97203 0.97124 1.00023 1.21451 1.00389 0.93174 0.99402 1.18925 0.92893 0.93447 0.93006 0.99134 1.21481 1.01616 0.95086 1.38422 0.91586 1.25703 0.94887 1.02403 0.95402 1.70041 1.08424 1.36077 1.41167 0.85582 0.78708 0.80321 0.77484 1.18434 1.21128 1.21274 1.22012 0.98422 0.77720 1.01872 1.24113 1.06816 0.97992 1.00538 1.20415 1.00102 1.02403 0.95001 1.20341 1.03295 0.93002 1.00776 1.26070 1.05984 1.02181 1.01935 1.84336 1.50869 1.10117 1.16505 0.90388 0.89169 0.92446 0.90275 0.90172 0.94624 0.90327 0.92083 0.94155 0.93212 0.90897 0.89394 0.83556 0.82154 0.79629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.96 71.98 0.64 -2.40 16 2 C -0.04 -1.20 2.25 -12.29 -0.03 -1.23 16 3 H 0.12 3.26 6.32 -2.39 -0.02 3.24 16 4 C 0.51 18.00 6.85 87.66 0.60 18.60 16 5 O -0.57 -22.90 14.43 -3.02 -0.04 -22.94 16 6 N -0.60 -21.36 2.97 -818.87 -2.43 -23.79 16 7 C 0.12 4.00 6.44 86.36 0.56 4.56 16 8 C -0.12 -4.69 6.08 30.67 0.19 -4.50 16 9 C -0.11 -4.73 4.96 30.62 0.15 -4.58 16 10 C 0.04 1.69 2.25 -11.46 -0.03 1.66 16 11 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 12 C -0.53 -26.47 8.57 25.60 0.22 -26.25 16 13 H 0.07 3.14 7.74 -2.91 -0.02 3.12 16 14 C 0.01 0.78 5.30 84.66 0.45 1.22 16 15 N -0.92 -51.09 11.31 21.45 0.24 -50.84 16 16 Si 0.95 41.18 29.54 68.60 2.03 43.21 16 17 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 18 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 20 C 0.12 4.41 4.92 86.36 0.42 4.84 16 21 C -0.18 -5.05 4.81 24.59 0.12 -4.93 16 22 C -0.15 -3.85 10.01 21.22 0.21 -3.64 16 23 C -0.14 -3.21 10.18 21.22 0.22 -2.99 16 24 C -0.23 -4.97 11.23 66.72 0.75 -4.22 16 25 S 0.12 3.15 21.87 -56.49 -1.24 1.91 16 26 H 0.08 1.69 7.40 -2.39 -0.02 1.67 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.35 8.12 -2.39 -0.02 1.33 16 29 H 0.08 2.74 7.00 -2.39 -0.02 2.72 16 30 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 33 H 0.06 3.16 6.03 -2.38 -0.01 3.15 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.26 13.83 8.31 -92.71 -0.77 13.05 16 36 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.09 2.90 5.29 -2.39 -0.01 2.89 16 38 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 40 H 0.19 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -61.70 331.63 4.06 -57.64 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.03 Total: 18.69 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 4.47 Total: -23.87 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -2.19 Total: -74.64 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.04 Total: -22.94 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.24 Total: 1.91 kcal Total: -61.70 4.06 -57.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.060 kcal (2) G-P(sol) polarization free energy of solvation -61.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds