Wall clock time and date at job start Tue Mar 31 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47332 * 2 1 4 4 H 1.09001 * 109.46805 * 305.00551 * 3 2 1 5 5 C 1.53001 * 109.47111 * 185.00436 * 3 2 1 6 6 S 1.81401 * 109.46900 * 179.97438 * 5 3 2 7 7 C 1.81394 * 103.00082 * 179.97438 * 6 5 3 8 8 N 1.46497 * 109.47177 * 65.00097 * 3 2 1 9 9 C 1.34774 * 120.00046 * 275.00548 * 8 3 2 10 10 O 1.21606 * 120.00091 * 359.97438 * 9 8 3 11 11 C 1.47434 * 120.00082 * 179.97438 * 9 8 3 12 12 C 1.39233 * 120.27940 * 354.90664 * 11 9 8 13 13 C 1.38220 * 120.08669 * 180.29460 * 12 11 9 14 14 C 1.38831 * 120.67867 * 359.44880 * 13 12 11 15 15 C 1.37598 * 120.56504 * 0.55488 * 14 13 12 16 16 C 1.40694 * 119.88644 * 359.72654 * 15 14 13 17 17 C 1.40890 * 120.32954 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00318 * 141.29513 * 17 16 15 19 19 C 1.40277 * 119.99835 * 321.30221 * 17 16 15 20 20 N 1.30630 * 120.00030 * 174.57565 * 19 17 16 21 21 Si 1.86793 * 119.99806 * 354.56878 * 19 17 16 22 22 H 1.48501 * 109.47024 * 89.16621 * 21 19 17 23 23 H 1.48507 * 109.47183 * 209.16294 * 21 19 17 24 24 H 1.48501 * 109.47344 * 329.16424 * 21 19 17 25 25 H 1.09002 * 109.47406 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47045 * 299.99737 * 1 2 3 27 27 H 1.09001 * 109.47677 * 59.99243 * 1 2 3 28 28 H 1.09007 * 109.47045 * 240.00263 * 2 1 3 29 29 H 1.08994 * 109.47422 * 120.00127 * 2 1 3 30 30 H 1.08997 * 109.46914 * 299.99608 * 5 3 2 31 31 H 1.08996 * 109.47339 * 60.00349 * 5 3 2 32 32 H 1.09002 * 109.46932 * 60.00644 * 7 6 5 33 33 H 1.09002 * 109.47233 * 179.97438 * 7 6 5 34 34 H 1.08995 * 109.47366 * 300.00285 * 7 6 5 35 35 H 0.96998 * 119.99731 * 94.99851 * 8 3 2 36 36 H 1.07990 * 119.95192 * 0.02562 * 12 11 9 37 37 H 1.08002 * 119.65961 * 179.69989 * 13 12 11 38 38 H 1.08000 * 119.71271 * 180.30388 * 14 13 12 39 39 H 1.08001 * 120.05109 * 179.74662 * 15 14 13 40 40 H 0.96995 * 119.99874 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 16 4.1694 3.1546 -0.1266 7 6 5.9655 2.9524 -0.2799 8 7 1.6525 2.0975 1.2518 9 6 0.4352 2.6644 1.3670 10 8 -0.3414 2.6325 0.4317 11 6 0.0450 3.3230 2.6270 12 6 0.8856 3.2716 3.7357 13 6 0.5131 3.8854 4.9168 14 6 -0.6923 4.5677 5.0110 15 6 -1.5439 4.6357 3.9324 16 6 -1.1911 4.0146 2.7203 17 6 -2.0559 4.0789 1.6098 18 1 -1.6508 4.2029 0.6164 19 6 -3.4430 3.9819 1.7946 20 7 -4.2501 4.1472 0.7809 21 14 -4.1360 3.6161 3.4902 22 1 -4.3605 4.8905 4.2187 23 1 -5.4247 2.8911 3.3525 24 1 -3.1739 2.7759 4.2476 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.9994 0.9053 0.7160 31 1 3.8531 0.9571 -1.0572 32 1 6.1941 2.4269 -1.2071 33 1 6.4419 3.9327 -0.2914 34 1 6.3398 2.3761 0.5662 35 1 2.2720 2.1231 1.9977 36 1 1.8280 2.7478 3.6740 37 1 1.1683 3.8370 5.7740 38 1 -0.9656 5.0458 5.9400 39 1 -2.4815 5.1653 4.0161 40 1 -5.2093 4.0805 0.9087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601411424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:41 Heat of formation + Delta-G solvation = -22.956399 kcal Electronic energy + Delta-G solvation = -21614.260741 eV Core-core repulsion = 18519.717614 eV Total energy + Delta-G solvation = -3094.543127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.32444 -37.37286 -35.45340 -33.59968 -31.98824 -30.44374 -30.17456 -29.45126 -28.79530 -25.34523 -23.71750 -22.49767 -21.35788 -20.25789 -19.51017 -17.51535 -16.75861 -16.17975 -15.90105 -15.29155 -14.80508 -14.11113 -14.08248 -14.02701 -13.84467 -13.80885 -13.28096 -12.96662 -12.84607 -12.67655 -12.62002 -12.29566 -11.94029 -11.68116 -11.41929 -11.03979 -10.90757 -10.81095 -10.67246 -10.50460 -10.39258 -10.01435 -9.95985 -9.74425 -9.22203 -8.47206 -8.27077 -7.77708 -7.66771 -7.53376 -6.82273 -4.41119 1.59237 2.15255 2.55137 2.63851 3.12444 3.20894 3.31901 3.89180 4.00313 4.07083 4.63928 4.67790 4.96007 4.97968 5.00653 5.28534 5.38329 5.44425 5.47608 5.53406 5.69878 5.81215 5.93084 6.02243 6.10020 6.19007 6.29217 6.41770 6.53727 6.56531 6.83733 6.94512 7.13693 7.18350 7.27977 7.43032 7.62027 7.79026 8.05128 8.39054 8.54016 8.67894 8.89257 9.42460 10.15889 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.005211 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.351234 B = 5372.108942 C = 6138.246327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.165 3.835 4 H 0.094 0.906 5 C -0.097 4.097 6 S -0.236 6.236 7 C -0.131 4.131 8 N -0.738 5.738 9 C 0.564 3.436 10 O -0.518 6.518 11 C -0.243 4.243 12 C -0.042 4.042 13 C -0.252 4.252 14 C -0.066 4.066 15 C -0.227 4.227 16 C 0.119 3.881 17 C -0.396 4.396 18 H 0.115 0.885 19 C 0.079 3.921 20 N -0.799 5.799 21 Si 0.907 3.093 22 H -0.269 1.269 23 H -0.291 1.291 24 H -0.243 1.243 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.392 0.608 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.075 -6.168 0.730 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.059 3.941 4 H 0.112 0.888 5 C -0.245 4.245 6 S -0.010 6.010 7 C -0.300 4.300 8 N -0.393 5.393 9 C 0.357 3.643 10 O -0.395 6.395 11 C -0.248 4.248 12 C -0.061 4.061 13 C -0.271 4.271 14 C -0.085 4.085 15 C -0.246 4.246 16 C 0.114 3.886 17 C -0.424 4.424 18 H 0.133 0.867 19 C -0.140 4.140 20 N -0.423 5.423 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.218 1.218 24 H -0.167 1.167 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.227 0.773 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.692 -5.220 -0.079 13.723 hybrid contribution 0.746 -1.259 1.036 1.792 sum 13.437 -6.479 0.956 14.948 Atomic orbital electron populations 1.21801 0.93906 1.00126 1.04416 1.21927 0.97935 0.95341 1.01298 1.20541 0.89582 0.93986 0.90030 0.88765 1.23824 0.99591 0.95967 1.05164 1.87553 1.04302 1.11940 1.97217 1.23408 0.96024 1.06197 1.04388 1.46026 1.17743 1.60382 1.15176 1.18243 0.80271 0.77430 0.88383 1.90776 1.50059 1.58479 1.40154 1.19490 1.01035 1.10586 0.93699 1.20789 0.96212 0.96068 0.93005 1.20293 0.99349 1.09799 0.97701 1.20736 0.94297 0.96780 0.96700 1.21178 1.01091 1.06851 0.95434 1.17563 0.91375 0.87779 0.91895 1.19930 0.89601 1.36186 0.96643 0.86693 1.26277 0.97030 0.91992 0.98692 1.69548 1.05263 1.34601 1.32908 0.86419 0.78012 0.79808 0.82422 1.19526 1.21829 1.16677 0.94161 0.91230 0.91967 0.91923 0.92217 0.89905 0.89136 0.90860 0.88248 0.90766 0.77333 0.88707 0.88600 0.88639 0.87772 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.51 37.15 0.32 -2.13 16 2 C -0.12 -1.66 5.61 -26.73 -0.15 -1.81 16 3 C 0.17 2.41 2.31 -67.93 -0.16 2.25 16 4 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 5 C -0.10 -1.07 5.50 37.16 0.20 -0.87 16 6 S -0.24 -3.03 21.96 -107.50 -2.36 -5.39 16 7 C -0.13 -1.13 10.76 101.05 1.09 -0.04 16 8 N -0.74 -12.49 4.52 -54.88 -0.25 -12.74 16 9 C 0.56 12.46 6.29 -12.52 -0.08 12.38 16 10 O -0.52 -13.17 10.81 5.27 0.06 -13.11 16 11 C -0.24 -5.67 5.92 -104.36 -0.62 -6.29 16 12 C -0.04 -0.84 9.52 -39.22 -0.37 -1.21 16 13 C -0.25 -4.99 10.03 -39.37 -0.39 -5.38 16 14 C -0.07 -1.39 10.01 -39.60 -0.40 -1.79 16 15 C -0.23 -5.39 6.94 -38.89 -0.27 -5.66 16 16 C 0.12 3.05 5.04 -106.55 -0.54 2.52 16 17 C -0.40 -11.11 8.08 -37.81 -0.31 -11.42 16 18 H 0.12 3.57 6.37 -52.49 -0.33 3.23 16 19 C 0.08 2.14 5.51 -17.30 -0.10 2.04 16 20 N -0.80 -22.00 13.92 55.56 0.77 -21.22 16 21 Si 0.91 21.03 24.48 -169.99 -4.16 16.87 16 22 H -0.27 -5.95 6.70 56.52 0.38 -5.57 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.24 -5.77 6.68 56.52 0.38 -5.40 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.41 5.65 -51.93 -0.29 1.12 16 27 H 0.06 1.15 7.84 -51.93 -0.41 0.74 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.39 5.88 6.66 -40.82 -0.27 5.61 16 36 H 0.09 1.56 6.43 -52.49 -0.34 1.23 16 37 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.10 2.45 4.89 -52.49 -0.26 2.19 16 40 H 0.29 7.09 8.29 -40.82 -0.34 6.75 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -29.97 331.15 -8.42 -38.39 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.70 Total: 9.64 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.77 Total: -17.41 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.53 Total: -33.97 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.06 Total: -13.11 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.16 Total: 16.87 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.36 Total: -5.39 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.97 -8.42 -38.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601411424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.430 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds