Wall clock time and date at job start Tue Mar 31 2020 06:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47332 * 2 1 4 4 H 1.09001 * 109.46805 * 305.00551 * 3 2 1 5 5 C 1.53001 * 109.47111 * 185.00436 * 3 2 1 6 6 S 1.81401 * 109.46900 * 179.97438 * 5 3 2 7 7 C 1.81394 * 103.00082 * 179.97438 * 6 5 3 8 8 N 1.46497 * 109.47177 * 65.00097 * 3 2 1 9 9 C 1.34774 * 120.00046 * 275.00548 * 8 3 2 10 10 O 1.21606 * 120.00091 * 359.97438 * 9 8 3 11 11 C 1.47434 * 120.00082 * 179.97438 * 9 8 3 12 12 C 1.39233 * 120.27940 * 354.90664 * 11 9 8 13 13 C 1.38220 * 120.08669 * 180.29460 * 12 11 9 14 14 C 1.38831 * 120.67867 * 359.44880 * 13 12 11 15 15 C 1.37598 * 120.56504 * 0.55488 * 14 13 12 16 16 C 1.40694 * 119.88644 * 359.72654 * 15 14 13 17 17 C 1.40890 * 120.32954 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00318 * 141.29513 * 17 16 15 19 19 C 1.40277 * 119.99835 * 321.30221 * 17 16 15 20 20 N 1.30630 * 120.00030 * 174.57565 * 19 17 16 21 21 Si 1.86793 * 119.99806 * 354.56878 * 19 17 16 22 22 H 1.48501 * 109.47024 * 89.16621 * 21 19 17 23 23 H 1.48507 * 109.47183 * 209.16294 * 21 19 17 24 24 H 1.48501 * 109.47344 * 329.16424 * 21 19 17 25 25 H 1.09002 * 109.47406 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47045 * 299.99737 * 1 2 3 27 27 H 1.09001 * 109.47677 * 59.99243 * 1 2 3 28 28 H 1.09007 * 109.47045 * 240.00263 * 2 1 3 29 29 H 1.08994 * 109.47422 * 120.00127 * 2 1 3 30 30 H 1.08997 * 109.46914 * 299.99608 * 5 3 2 31 31 H 1.08996 * 109.47339 * 60.00349 * 5 3 2 32 32 H 1.09002 * 109.46932 * 60.00644 * 7 6 5 33 33 H 1.09002 * 109.47233 * 179.97438 * 7 6 5 34 34 H 1.08995 * 109.47366 * 300.00285 * 7 6 5 35 35 H 0.96998 * 119.99731 * 94.99851 * 8 3 2 36 36 H 1.07990 * 119.95192 * 0.02562 * 12 11 9 37 37 H 1.08002 * 119.65961 * 179.69989 * 13 12 11 38 38 H 1.08000 * 119.71271 * 180.30388 * 14 13 12 39 39 H 1.08001 * 120.05109 * 179.74662 * 15 14 13 40 40 H 0.96995 * 119.99874 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 16 4.1694 3.1546 -0.1266 7 6 5.9655 2.9524 -0.2799 8 7 1.6525 2.0975 1.2518 9 6 0.4352 2.6644 1.3670 10 8 -0.3414 2.6325 0.4317 11 6 0.0450 3.3230 2.6270 12 6 0.8856 3.2716 3.7357 13 6 0.5131 3.8854 4.9168 14 6 -0.6923 4.5677 5.0110 15 6 -1.5439 4.6357 3.9324 16 6 -1.1911 4.0146 2.7203 17 6 -2.0559 4.0789 1.6098 18 1 -1.6508 4.2029 0.6164 19 6 -3.4430 3.9819 1.7946 20 7 -4.2501 4.1472 0.7809 21 14 -4.1360 3.6161 3.4902 22 1 -4.3605 4.8905 4.2187 23 1 -5.4247 2.8911 3.3525 24 1 -3.1739 2.7759 4.2476 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.9994 0.9053 0.7160 31 1 3.8531 0.9571 -1.0572 32 1 6.1941 2.4269 -1.2071 33 1 6.4419 3.9327 -0.2914 34 1 6.3398 2.3761 0.5662 35 1 2.2720 2.1231 1.9977 36 1 1.8280 2.7478 3.6740 37 1 1.1683 3.8370 5.7740 38 1 -0.9656 5.0458 5.9400 39 1 -2.4815 5.1653 4.0161 40 1 -5.2093 4.0805 0.9087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601411424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:40 Heat of formation + Delta-G solvation = -42.294814 kcal Electronic energy + Delta-G solvation = -21615.099317 eV Core-core repulsion = 18519.717614 eV Total energy + Delta-G solvation = -3095.381703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.96802 -39.03308 -36.97798 -35.48777 -33.52747 -32.26871 -31.60520 -30.71123 -29.60719 -27.19509 -24.97970 -24.13932 -23.04692 -21.65527 -21.15714 -19.39774 -18.36631 -17.43251 -17.20208 -16.97646 -16.24700 -15.78573 -15.71966 -15.47915 -14.92468 -14.75217 -14.59316 -14.47054 -14.41654 -13.96322 -13.79122 -13.65742 -13.58607 -13.26084 -12.84802 -12.66755 -12.50303 -12.35664 -12.11133 -12.01028 -11.90159 -11.71747 -11.58330 -11.06516 -10.84259 -10.24377 -9.82222 -9.48625 -9.36153 -8.76615 -8.65935 -6.43368 0.39174 0.73389 0.85443 1.24045 1.36946 1.46121 1.74147 2.11966 2.35161 2.48963 2.77025 3.55758 3.58624 4.04037 4.13279 4.25182 4.29910 4.31784 4.39161 4.40017 4.44845 4.52020 4.58580 4.74190 4.80826 4.90549 4.92673 4.96707 5.01413 5.03611 5.23579 5.33886 5.48502 5.52939 5.70536 5.76518 5.88961 5.98135 6.29031 6.49560 6.71365 6.82398 6.97972 7.76497 8.28912 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.005211 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.351234 B = 5372.108942 C = 6138.246327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C 0.162 3.838 4 H 0.055 0.945 5 C -0.073 4.073 6 S -0.324 6.324 7 C -0.108 4.108 8 N -0.716 5.716 9 C 0.558 3.442 10 O -0.562 6.562 11 C -0.259 4.259 12 C -0.042 4.042 13 C -0.227 4.227 14 C -0.065 4.065 15 C -0.247 4.247 16 C 0.100 3.900 17 C -0.440 4.440 18 H 0.061 0.939 19 C 0.035 3.965 20 N -0.858 5.858 21 Si 0.968 3.032 22 H -0.249 1.249 23 H -0.283 1.283 24 H -0.250 1.250 25 H 0.059 0.941 26 H 0.029 0.971 27 H 0.030 0.970 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.405 0.595 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.101 0.899 40 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.053 -7.932 4.203 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C 0.056 3.944 4 H 0.074 0.926 5 C -0.221 4.221 6 S -0.099 6.099 7 C -0.277 4.277 8 N -0.371 5.371 9 C 0.350 3.650 10 O -0.442 6.442 11 C -0.264 4.264 12 C -0.060 4.060 13 C -0.246 4.246 14 C -0.083 4.083 15 C -0.266 4.266 16 C 0.096 3.904 17 C -0.470 4.470 18 H 0.079 0.921 19 C -0.177 4.177 20 N -0.485 5.485 21 Si 0.791 3.209 22 H -0.174 1.174 23 H -0.210 1.210 24 H -0.173 1.173 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.242 0.758 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.119 0.881 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.730 -6.990 3.410 18.450 hybrid contribution -0.103 -0.742 0.052 0.751 sum 16.627 -7.732 3.462 18.661 Atomic orbital electron populations 1.21716 0.97088 1.00190 1.00964 1.21876 0.94809 0.94715 1.04047 1.20655 0.92343 0.94013 0.87406 0.92644 1.23687 0.96090 0.94576 1.07720 1.87914 1.09595 1.14878 1.97528 1.23409 0.91217 1.07072 1.05953 1.45761 1.15954 1.58908 1.16493 1.18319 0.81414 0.77569 0.87691 1.90783 1.51926 1.59947 1.41533 1.19952 1.00839 1.10061 0.95518 1.21230 0.97150 0.95818 0.91837 1.20953 0.98794 1.06221 0.98609 1.21241 0.93879 0.96019 0.97146 1.21277 1.02111 1.07480 0.95740 1.17821 0.92174 0.88188 0.92232 1.19647 0.90996 1.41080 0.95228 0.92115 1.27000 0.96833 0.91653 1.02259 1.69617 1.05670 1.38433 1.34826 0.85504 0.77174 0.80205 0.78056 1.17415 1.21011 1.17347 0.92164 0.95168 0.95078 0.88621 0.89752 0.86980 0.86645 0.89348 0.87769 0.88951 0.75790 0.84442 0.83827 0.84647 0.88111 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 8.51 71.98 0.61 -4.33 16 2 C -0.11 -2.82 5.61 30.59 0.17 -2.65 16 3 C 0.16 4.57 2.31 44.99 0.10 4.67 16 4 H 0.06 2.03 7.58 -2.39 -0.02 2.01 16 5 C -0.07 -1.37 5.50 71.98 0.40 -0.98 16 6 S -0.32 -7.81 21.96 -56.49 -1.24 -9.05 16 7 C -0.11 -1.48 10.76 113.37 1.22 -0.26 16 8 N -0.72 -23.76 4.52 -445.79 -2.01 -25.77 16 9 C 0.56 25.67 6.29 86.67 0.54 26.22 16 10 O -0.56 -31.31 10.81 -4.05 -0.04 -31.35 16 11 C -0.26 -12.15 5.92 -19.70 -0.12 -12.27 16 12 C -0.04 -1.52 9.52 22.50 0.21 -1.31 16 13 C -0.23 -7.71 10.03 22.41 0.22 -7.49 16 14 C -0.06 -2.44 10.01 22.26 0.22 -2.22 16 15 C -0.25 -11.57 6.94 22.72 0.16 -11.42 16 16 C 0.10 5.32 5.04 -21.11 -0.11 5.21 16 17 C -0.44 -26.93 8.08 23.42 0.19 -26.74 16 18 H 0.06 4.25 6.37 -2.91 -0.02 4.24 16 19 C 0.03 2.03 5.51 85.37 0.47 2.50 16 20 N -0.86 -51.59 13.92 21.88 0.30 -51.28 16 21 Si 0.97 45.11 24.48 68.60 1.68 46.79 16 22 H -0.25 -10.64 6.70 99.48 0.67 -9.97 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.25 -11.66 6.68 99.48 0.66 -11.00 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.03 1.27 5.65 -2.38 -0.01 1.25 16 27 H 0.03 1.23 7.84 -2.39 -0.02 1.21 16 28 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.41 11.01 6.66 -92.71 -0.62 10.39 16 36 H 0.14 3.79 6.43 -2.92 -0.02 3.78 16 37 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 38 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 39 H 0.10 4.72 4.89 -2.91 -0.01 4.70 16 40 H 0.29 15.67 8.29 -92.71 -0.77 14.91 16 Total: -1.00 -76.10 331.15 3.34 -72.76 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.35 Total: 28.96 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: 4.30 Total: -31.06 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -1.71 Total: -77.05 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.04 Total: -31.35 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.68 Total: 46.79 kcal Atomic # 16 Polarization: -7.81 SS G_CDS: -1.24 Total: -9.05 kcal Total: -76.10 3.34 -72.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601411424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.465 kcal (2) G-P(sol) polarization free energy of solvation -76.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds