Wall clock time and date at job start Tue Mar 31 2020 07:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46965 * 2 1 4 4 S 1.81400 * 109.47394 * 120.00148 * 2 1 3 5 5 C 1.81400 * 102.99919 * 175.00011 * 4 2 1 6 6 C 1.52995 * 109.47132 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47394 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39235 * 120.28378 * 356.68142 * 10 8 7 12 12 C 1.38223 * 120.09183 * 180.28231 * 11 10 8 13 13 C 1.38824 * 120.67578 * 359.69536 * 12 11 10 14 14 C 1.37601 * 120.57302 * 0.02562 * 13 12 11 15 15 C 1.40712 * 119.87956 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32906 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00234 * 145.79747 * 16 15 14 18 18 C 1.40273 * 119.99571 * 325.79352 * 16 15 14 19 19 N 1.30635 * 120.00253 * 340.74281 * 18 16 15 20 20 Si 1.86798 * 119.99912 * 160.74547 * 18 16 15 21 21 H 1.48507 * 109.47415 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.47275 * 299.99863 * 20 18 16 23 23 H 1.48501 * 109.47305 * 59.99898 * 20 18 16 24 24 H 1.09007 * 109.46518 * 299.99882 * 1 2 3 25 25 H 1.08997 * 109.47181 * 59.99329 * 1 2 3 26 26 H 1.08998 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46604 * 240.00482 * 2 1 3 28 28 H 1.09001 * 109.47650 * 60.00286 * 3 2 1 29 29 H 1.09000 * 109.47131 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47677 * 300.00194 * 3 2 1 31 31 H 1.08999 * 109.46800 * 59.99961 * 5 4 2 32 32 H 1.09005 * 109.47077 * 300.00143 * 5 4 2 33 33 H 1.09004 * 109.47250 * 59.99742 * 6 5 4 34 34 H 1.09005 * 109.47069 * 299.99918 * 6 5 4 35 35 H 0.96994 * 119.99831 * 359.97438 * 7 6 5 36 36 H 1.08001 * 119.94893 * 359.97438 * 11 10 8 37 37 H 1.07988 * 119.65914 * 179.72052 * 12 11 10 38 38 H 1.08002 * 119.71756 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.06577 * 180.02562 * 14 13 12 40 40 H 0.97003 * 120.00071 * 354.83739 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1348 -0.8552 1.4811 5 6 3.9309 -0.8874 1.2288 6 6 4.5996 -1.5890 2.4126 7 7 6.0500 -1.6156 2.2087 8 6 6.8498 -2.1876 3.1305 9 8 6.3673 -2.6821 4.1313 10 6 8.3096 -2.2139 2.9255 11 6 8.8627 -1.7115 1.7506 12 6 10.2314 -1.7435 1.5601 13 6 11.0701 -2.2679 2.5342 14 6 10.5534 -2.7665 3.7080 15 6 9.1635 -2.7468 3.9263 16 6 8.6242 -3.2553 5.1245 17 1 7.7469 -2.7988 5.5584 18 6 9.2269 -4.3545 5.7539 19 7 10.0271 -5.1359 5.0788 20 14 8.8853 -4.7012 7.5573 21 1 9.6367 -5.9103 7.9801 22 1 9.3163 -3.5390 8.3751 23 1 7.4308 -4.9302 7.7505 24 1 -0.3632 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 4.3053 0.1334 1.1522 32 1 4.1591 -1.4281 0.3103 33 1 4.2250 -2.6098 2.4889 34 1 4.3714 -1.0486 3.3314 35 1 6.4348 -1.2216 1.4103 36 1 8.2211 -1.3009 0.9851 37 1 10.6526 -1.3561 0.6443 38 1 12.1373 -2.2848 2.3693 39 1 11.2134 -3.1722 4.4604 40 1 10.1462 -5.0012 4.1255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601576750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:05 Heat of formation + Delta-G solvation = -39.202993 kcal Electronic energy + Delta-G solvation = -20409.635832 eV Core-core repulsion = 17314.388200 eV Total energy + Delta-G solvation = -3095.247632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.05747 -37.08280 -35.08492 -34.76855 -33.88146 -30.96853 -29.65916 -29.09527 -27.56897 -25.30106 -23.61067 -22.26824 -21.68116 -20.85946 -19.60194 -18.09810 -16.73014 -16.29697 -15.80081 -15.40489 -15.04523 -14.75276 -14.40745 -14.11428 -13.91666 -13.74791 -13.66994 -13.32959 -12.63207 -12.62288 -12.33706 -12.08463 -11.94346 -11.79290 -11.66215 -11.44129 -11.40234 -11.12572 -10.91368 -10.76201 -10.35901 -10.18406 -10.01149 -9.62882 -9.08242 -8.54746 -8.45961 -7.86039 -7.81039 -7.62310 -7.15848 -4.47563 1.35937 2.22048 2.34370 2.72451 3.21238 3.31510 3.41835 3.99860 4.03429 4.05679 4.42667 4.50822 4.62669 4.73618 4.79782 4.90220 5.20918 5.24256 5.35751 5.39112 5.44403 5.48505 5.77384 5.78988 5.81603 5.87340 5.90621 6.07986 6.17491 6.48021 6.69722 6.96513 7.01955 7.25918 7.47188 7.58902 7.70208 7.87175 8.07012 8.19556 8.32451 8.71486 8.84591 9.31954 10.03226 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.019887 B = 0.003385 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.605817 B = 8269.387408 C = 9472.583282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.064 4.064 3 C -0.149 4.149 4 S -0.242 6.242 5 C -0.099 4.099 6 C 0.143 3.857 7 N -0.748 5.748 8 C 0.564 3.436 9 O -0.534 6.534 10 C -0.265 4.265 11 C -0.043 4.043 12 C -0.260 4.260 13 C -0.076 4.076 14 C -0.200 4.200 15 C 0.120 3.880 16 C -0.465 4.465 17 H 0.106 0.894 18 C 0.031 3.969 19 N -0.792 5.792 20 Si 1.070 2.930 21 H -0.274 1.274 22 H -0.274 1.274 23 H -0.272 1.272 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.391 0.609 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.847 9.017 -9.537 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.193 4.193 3 C -0.208 4.208 4 S -0.016 6.016 5 C -0.248 4.248 6 C 0.018 3.982 7 N -0.404 5.404 8 C 0.358 3.642 9 O -0.412 6.412 10 C -0.270 4.270 11 C -0.062 4.062 12 C -0.280 4.280 13 C -0.095 4.095 14 C -0.219 4.219 15 C 0.116 3.884 16 C -0.492 4.492 17 H 0.123 0.877 18 C -0.191 4.191 19 N -0.416 5.416 20 Si 0.893 3.107 21 H -0.199 1.199 22 H -0.199 1.199 23 H -0.197 1.197 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.225 0.775 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.372 7.180 -6.712 15.801 hybrid contribution 0.622 1.743 -3.056 3.573 sum -11.749 8.922 -9.768 17.694 Atomic orbital electron populations 1.21601 0.91727 1.03045 1.02718 1.23105 0.99805 0.98583 0.97762 1.22112 1.01326 0.94471 1.02903 1.86983 1.05147 1.77262 1.32160 1.23568 0.94183 1.04417 1.02635 1.20718 0.81161 1.00624 0.95721 1.46003 1.05417 1.63496 1.25499 1.18388 0.86942 0.77010 0.81863 1.90690 1.76479 1.45770 1.28261 1.19357 0.90621 1.19576 0.97476 1.20704 0.94670 0.95983 0.94857 1.20234 0.93364 1.13687 1.00665 1.20745 0.97563 0.97049 0.94103 1.21257 0.95027 1.07489 0.98153 1.17503 0.90583 0.89444 0.90916 1.21193 1.12124 1.11841 1.04033 0.87662 1.27288 0.91300 0.92941 1.07541 1.70394 1.25695 1.33041 1.12424 0.83559 0.77677 0.77259 0.72165 1.19924 1.19922 1.19724 0.91606 0.91170 0.91585 0.89555 0.91233 0.92419 0.91798 0.89527 0.89648 0.91228 0.91208 0.77476 0.89200 0.88907 0.88854 0.87497 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 9.20 37.16 0.34 -0.59 16 2 C -0.06 -0.53 3.38 -26.73 -0.09 -0.62 16 3 C -0.15 -1.10 9.10 37.16 0.34 -0.76 16 4 S -0.24 -2.77 21.15 -107.50 -2.27 -5.04 16 5 C -0.10 -1.14 5.75 37.16 0.21 -0.93 16 6 C 0.14 2.22 5.68 -4.05 -0.02 2.19 16 7 N -0.75 -13.19 5.51 -61.38 -0.34 -13.53 16 8 C 0.56 13.15 7.73 -12.52 -0.10 13.05 16 9 O -0.53 -14.31 13.56 5.27 0.07 -14.24 16 10 C -0.27 -6.44 5.92 -104.36 -0.62 -7.06 16 11 C -0.04 -0.90 9.53 -39.22 -0.37 -1.28 16 12 C -0.26 -5.41 10.03 -39.37 -0.39 -5.80 16 13 C -0.08 -1.67 10.01 -39.60 -0.40 -2.06 16 14 C -0.20 -4.98 7.87 -38.88 -0.31 -5.29 16 15 C 0.12 3.20 5.17 -106.54 -0.55 2.65 16 16 C -0.47 -12.85 7.65 -37.81 -0.29 -13.14 16 17 H 0.11 3.04 5.92 -52.49 -0.31 2.73 16 18 C 0.03 0.81 5.04 -17.30 -0.09 0.72 16 19 N -0.79 -21.31 12.57 55.56 0.70 -20.61 16 20 Si 1.07 22.68 29.98 -169.99 -5.10 17.58 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.68 8.14 -51.92 -0.42 0.25 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.44 6.92 -51.93 -0.36 0.08 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.90 7.14 -51.92 -0.37 0.53 16 32 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.39 5.80 6.51 -40.82 -0.27 5.54 16 36 H 0.09 1.53 6.41 -52.49 -0.34 1.19 16 37 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.11 2.71 6.94 -52.49 -0.36 2.35 16 40 H 0.30 8.19 6.55 -40.82 -0.27 7.92 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -30.10 341.95 -9.84 -39.94 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.72 Total: 9.65 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.33 Total: -18.91 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.36 Total: -34.13 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.07 Total: -14.24 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.10 Total: 17.58 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.27 Total: -5.04 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.10 -9.84 -39.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601576750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.736 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds