Wall clock time and date at job start Tue Mar 31 2020 07:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46965 * 2 1 4 4 S 1.81400 * 109.47394 * 120.00148 * 2 1 3 5 5 C 1.81400 * 102.99919 * 175.00011 * 4 2 1 6 6 C 1.52995 * 109.47132 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47394 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39235 * 120.28378 * 356.68142 * 10 8 7 12 12 C 1.38223 * 120.09183 * 180.28231 * 11 10 8 13 13 C 1.38824 * 120.67578 * 359.69536 * 12 11 10 14 14 C 1.37601 * 120.57302 * 0.02562 * 13 12 11 15 15 C 1.40712 * 119.87956 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32906 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00234 * 145.79747 * 16 15 14 18 18 C 1.40273 * 119.99571 * 325.79352 * 16 15 14 19 19 N 1.30635 * 120.00253 * 340.74281 * 18 16 15 20 20 Si 1.86798 * 119.99912 * 160.74547 * 18 16 15 21 21 H 1.48507 * 109.47415 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.47275 * 299.99863 * 20 18 16 23 23 H 1.48501 * 109.47305 * 59.99898 * 20 18 16 24 24 H 1.09007 * 109.46518 * 299.99882 * 1 2 3 25 25 H 1.08997 * 109.47181 * 59.99329 * 1 2 3 26 26 H 1.08998 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46604 * 240.00482 * 2 1 3 28 28 H 1.09001 * 109.47650 * 60.00286 * 3 2 1 29 29 H 1.09000 * 109.47131 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47677 * 300.00194 * 3 2 1 31 31 H 1.08999 * 109.46800 * 59.99961 * 5 4 2 32 32 H 1.09005 * 109.47077 * 300.00143 * 5 4 2 33 33 H 1.09004 * 109.47250 * 59.99742 * 6 5 4 34 34 H 1.09005 * 109.47069 * 299.99918 * 6 5 4 35 35 H 0.96994 * 119.99831 * 359.97438 * 7 6 5 36 36 H 1.08001 * 119.94893 * 359.97438 * 11 10 8 37 37 H 1.07988 * 119.65914 * 179.72052 * 12 11 10 38 38 H 1.08002 * 119.71756 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.06577 * 180.02562 * 14 13 12 40 40 H 0.97003 * 120.00071 * 354.83739 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1348 -0.8552 1.4811 5 6 3.9309 -0.8874 1.2288 6 6 4.5996 -1.5890 2.4126 7 7 6.0500 -1.6156 2.2087 8 6 6.8498 -2.1876 3.1305 9 8 6.3673 -2.6821 4.1313 10 6 8.3096 -2.2139 2.9255 11 6 8.8627 -1.7115 1.7506 12 6 10.2314 -1.7435 1.5601 13 6 11.0701 -2.2679 2.5342 14 6 10.5534 -2.7665 3.7080 15 6 9.1635 -2.7468 3.9263 16 6 8.6242 -3.2553 5.1245 17 1 7.7469 -2.7988 5.5584 18 6 9.2269 -4.3545 5.7539 19 7 10.0271 -5.1359 5.0788 20 14 8.8853 -4.7012 7.5573 21 1 9.6367 -5.9103 7.9801 22 1 9.3163 -3.5390 8.3751 23 1 7.4308 -4.9302 7.7505 24 1 -0.3632 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 4.3053 0.1334 1.1522 32 1 4.1591 -1.4281 0.3103 33 1 4.2250 -2.6098 2.4889 34 1 4.3714 -1.0486 3.3314 35 1 6.4348 -1.2216 1.4103 36 1 8.2211 -1.3009 0.9851 37 1 10.6526 -1.3561 0.6443 38 1 12.1373 -2.2848 2.3693 39 1 11.2134 -3.1722 4.4604 40 1 10.1462 -5.0012 4.1255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601576750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:05 Heat of formation + Delta-G solvation = -56.315757 kcal Electronic energy + Delta-G solvation = -20410.377897 eV Core-core repulsion = 17314.388200 eV Total energy + Delta-G solvation = -3095.989697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.84878 -38.87075 -36.41299 -35.71735 -35.65494 -32.55644 -31.44524 -30.69194 -28.16702 -27.15788 -25.01476 -23.69940 -22.79325 -22.42636 -21.33686 -19.96608 -18.23333 -17.33949 -17.16975 -16.67347 -16.53075 -16.06826 -15.83557 -15.67540 -15.45824 -15.10762 -14.99017 -14.39974 -14.27450 -13.96566 -13.77099 -13.25457 -13.16254 -12.98803 -12.86416 -12.69498 -12.51079 -12.42411 -12.21237 -12.11404 -12.01860 -11.95311 -11.46811 -10.97210 -10.79762 -10.40124 -10.10221 -9.62673 -9.50401 -9.11829 -8.75873 -6.47614 0.38335 0.49593 0.90091 1.45991 1.53693 1.61353 1.76168 2.21983 2.30269 2.49622 2.73046 3.54606 3.61565 3.80428 3.85789 3.92697 4.20801 4.25445 4.29552 4.31872 4.44239 4.64184 4.69928 4.71420 4.76871 4.84367 4.86253 4.88140 4.94532 5.12726 5.23299 5.25044 5.41858 5.47308 5.64090 5.69793 5.88087 5.95467 6.18940 6.32796 6.65076 6.83515 6.89881 7.55405 8.03340 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.019887 B = 0.003385 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.605817 B = 8269.387408 C = 9472.583282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 C -0.148 4.148 4 S -0.293 6.293 5 C -0.081 4.081 6 C 0.145 3.855 7 N -0.724 5.724 8 C 0.557 3.443 9 O -0.579 6.579 10 C -0.283 4.283 11 C -0.040 4.040 12 C -0.243 4.243 13 C -0.072 4.072 14 C -0.226 4.226 15 C 0.095 3.905 16 C -0.511 4.511 17 H 0.080 0.920 18 C -0.003 4.003 19 N -0.817 5.817 20 Si 1.115 2.885 21 H -0.263 1.263 22 H -0.258 1.258 23 H -0.273 1.273 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.409 0.591 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 11.027 -12.675 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.179 4.179 3 C -0.207 4.207 4 S -0.067 6.067 5 C -0.229 4.229 6 C 0.021 3.979 7 N -0.380 5.380 8 C 0.350 3.650 9 O -0.460 6.460 10 C -0.288 4.288 11 C -0.059 4.059 12 C -0.262 4.262 13 C -0.090 4.090 14 C -0.245 4.245 15 C 0.091 3.909 16 C -0.539 4.539 17 H 0.098 0.902 18 C -0.218 4.218 19 N -0.441 5.441 20 Si 0.932 3.068 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.198 1.198 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.246 0.754 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.143 0.857 39 H 0.107 0.893 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.601 9.231 -9.912 18.500 hybrid contribution 0.624 1.307 -2.378 2.784 sum -11.977 10.538 -12.291 20.138 Atomic orbital electron populations 1.21630 0.90840 1.03011 1.03555 1.23219 1.00332 0.98691 0.95632 1.22106 1.01267 0.93728 1.03565 1.87237 1.05575 1.78467 1.35424 1.23365 0.93662 1.04980 1.00933 1.20724 0.79850 1.00039 0.97314 1.45682 1.06041 1.61587 1.24670 1.18484 0.87337 0.77006 0.82133 1.90673 1.77174 1.47817 1.30349 1.19752 0.91281 1.19356 0.98384 1.21164 0.95742 0.94656 0.94337 1.20826 0.93124 1.10905 1.01366 1.21176 0.99662 0.95210 0.92983 1.21212 0.94279 1.09429 0.99567 1.17909 0.91882 0.89689 0.91439 1.21108 1.12669 1.13892 1.06266 0.90232 1.28461 0.90546 0.92163 1.10633 1.70503 1.28099 1.33940 1.11518 0.83035 0.77498 0.77985 0.68268 1.18749 1.18289 1.19799 0.92155 0.88821 0.92108 0.88504 0.91901 0.92506 0.89767 0.87747 0.87933 0.93027 0.92785 0.75372 0.84461 0.84391 0.85695 0.89262 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.20 71.98 0.66 -0.89 16 2 C -0.05 -0.70 3.38 30.59 0.10 -0.60 16 3 C -0.15 -1.73 9.10 71.98 0.66 -1.07 16 4 S -0.29 -6.39 21.15 -56.49 -1.19 -7.58 16 5 C -0.08 -1.68 5.75 71.98 0.41 -1.27 16 6 C 0.15 4.45 5.68 86.38 0.49 4.95 16 7 N -0.72 -24.57 5.51 -466.37 -2.57 -27.14 16 8 C 0.56 26.30 7.73 86.67 0.67 26.97 16 9 O -0.58 -32.58 13.56 -4.06 -0.06 -32.63 16 10 C -0.28 -13.68 5.92 -19.70 -0.12 -13.80 16 11 C -0.04 -1.55 9.53 22.51 0.21 -1.33 16 12 C -0.24 -9.02 10.03 22.41 0.22 -8.79 16 13 C -0.07 -2.99 10.01 22.26 0.22 -2.77 16 14 C -0.23 -11.43 7.87 22.72 0.18 -11.25 16 15 C 0.09 5.23 5.17 -21.11 -0.11 5.12 16 16 C -0.51 -30.02 7.65 23.41 0.18 -29.84 16 17 H 0.08 4.96 5.92 -2.91 -0.02 4.94 16 18 C 0.00 -0.15 5.04 85.37 0.43 0.28 16 19 N -0.82 -46.17 12.57 21.88 0.28 -45.90 16 20 Si 1.11 47.97 29.98 68.60 2.06 50.02 16 21 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 24 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 27 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.68 6.92 -2.39 -0.02 0.66 16 30 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.10 1.82 7.14 -2.39 -0.02 1.81 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.41 10.72 6.51 -92.71 -0.60 10.12 16 36 H 0.14 3.89 6.41 -2.91 -0.02 3.87 16 37 H 0.14 3.98 8.06 -2.92 -0.02 3.95 16 38 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 39 H 0.09 4.75 6.94 -2.91 -0.02 4.73 16 40 H 0.28 16.43 6.55 -92.71 -0.61 15.82 16 Total: -1.00 -70.89 341.95 3.33 -67.56 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.60 Total: 29.98 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 4.22 Total: -34.31 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -2.29 Total: -73.03 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.06 Total: -32.63 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.06 Total: 50.02 kcal Atomic # 16 Polarization: -6.39 SS G_CDS: -1.19 Total: -7.58 kcal Total: -70.89 3.33 -67.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601576750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.241 kcal (2) G-P(sol) polarization free energy of solvation -70.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds