Wall clock time and date at job start Tue Mar 31 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47242 * 2 1 4 4 C 1.52998 * 109.47089 * 180.02562 * 3 2 1 5 5 S 1.81398 * 109.47074 * 180.02562 * 4 3 2 6 6 C 1.81399 * 102.99781 * 180.02562 * 5 4 3 7 7 C 1.50714 * 109.46756 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99654 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99611 * 179.97438 * 7 6 5 10 10 C 1.39934 * 119.99619 * 174.88694 * 9 7 6 11 11 C 1.39301 * 119.94407 * 145.78260 * 10 9 7 12 12 C 1.38479 * 120.42722 * 180.02562 * 11 10 9 13 13 C 1.37680 * 120.32453 * 359.97374 * 12 11 10 14 14 C 1.40744 * 119.88647 * 0.03052 * 13 12 11 15 15 C 1.41403 * 120.21462 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00505 * 205.16949 * 15 14 13 17 17 C 1.39933 * 120.00052 * 25.16661 * 15 14 13 18 18 N 1.30836 * 119.99792 * 16.80949 * 17 15 14 19 19 Si 1.86799 * 120.00348 * 196.80781 * 17 15 14 20 20 H 1.48497 * 109.47277 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47355 * 120.00170 * 19 17 15 22 22 H 1.48505 * 109.47113 * 240.00035 * 19 17 15 23 23 C 1.38238 * 119.95249 * 325.51636 * 10 9 7 24 24 H 1.09003 * 109.46851 * 299.99691 * 1 2 3 25 25 H 1.08993 * 109.46953 * 59.99838 * 1 2 3 26 26 H 1.08997 * 109.46849 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47010 * 239.99787 * 2 1 3 28 28 H 1.09003 * 109.46900 * 120.00294 * 2 1 3 29 29 H 1.09003 * 109.46557 * 59.99992 * 3 2 1 30 30 H 1.08995 * 109.46859 * 300.00281 * 3 2 1 31 31 H 1.09001 * 109.47120 * 59.99814 * 4 3 2 32 32 H 1.09003 * 109.46944 * 300.00226 * 4 3 2 33 33 H 1.08994 * 109.46861 * 299.99314 * 6 5 4 34 34 H 1.08999 * 109.47419 * 60.00003 * 6 5 4 35 35 H 0.96995 * 120.00342 * 354.89338 * 9 7 6 36 36 H 1.07996 * 119.78208 * 359.97438 * 11 10 9 37 37 H 1.07998 * 119.83949 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.06071 * 180.02562 * 13 12 11 39 39 H 0.97004 * 119.99868 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.15793 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 16 4.1748 3.1527 0.0001 6 6 5.9772 2.9481 -0.0016 7 6 6.6365 4.3034 -0.0017 8 8 5.9572 5.3081 -0.0013 9 7 7.9809 4.3987 -0.0024 10 6 8.5933 5.6522 -0.1106 11 6 9.7911 5.9007 0.5558 12 6 10.4056 7.1377 0.4561 13 6 9.8389 8.1362 -0.3038 14 6 8.6288 7.8998 -0.9827 15 6 8.0404 8.9204 -1.7646 16 1 6.9757 8.9164 -1.9453 17 6 8.8377 9.9359 -2.3044 18 7 10.1349 9.7810 -2.3755 19 14 8.0501 11.5125 -2.9235 20 1 6.5792 11.4392 -2.7324 21 1 8.5915 12.6678 -2.1637 22 1 8.3532 11.6836 -4.3671 23 6 8.0117 6.6402 -0.8829 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9330 0.9287 -0.8908 32 1 3.9338 0.9284 0.8891 33 1 6.2810 2.3961 0.8878 34 1 6.2796 2.3973 -0.8922 35 1 8.5239 3.5984 0.0720 36 1 10.2430 5.1238 1.1546 37 1 11.3343 7.3199 0.9764 38 1 10.3219 9.0992 -0.3789 39 1 10.6877 10.4850 -2.7494 40 1 7.0854 6.4470 -1.4036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701225473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:04 Heat of formation + Delta-G solvation = -34.839779 kcal Electronic energy + Delta-G solvation = -19808.629799 eV Core-core repulsion = 16713.571370 eV Total energy + Delta-G solvation = -3095.058429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.65656 -37.16290 -35.94464 -34.47131 -33.06569 -30.63892 -30.27760 -29.81889 -27.55130 -25.28812 -24.28515 -21.87338 -21.36257 -20.85306 -19.64666 -17.80688 -16.80943 -16.22277 -16.07064 -15.57850 -15.32636 -14.96766 -14.59380 -14.41944 -13.91363 -13.76799 -13.48185 -13.25345 -12.87355 -12.69745 -12.61369 -12.08846 -11.80440 -11.65210 -11.56959 -11.20175 -11.10933 -11.07946 -10.93769 -10.91503 -10.44117 -10.18257 -9.94647 -9.67675 -9.45241 -9.07969 -9.00336 -7.67327 -7.44843 -6.93066 -6.70679 -4.32537 1.38826 2.48426 2.54298 2.83009 3.11563 3.18454 3.19926 3.32394 3.59164 3.98670 4.46537 4.54825 4.65090 4.75822 4.89821 4.90081 4.94491 5.13648 5.18269 5.29189 5.44379 5.45737 5.59842 5.72549 5.78672 5.88821 5.98939 6.23918 6.38526 6.72397 7.00111 7.04087 7.07722 7.26104 7.53956 7.71946 7.96343 8.10284 8.14805 8.24625 8.59984 8.71242 8.94920 8.99103 10.22674 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.002836 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.641045 B = 9869.648149 C =11012.512973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.103 4.103 4 C -0.109 4.109 5 S -0.180 6.180 6 C -0.126 4.126 7 C 0.519 3.481 8 O -0.495 6.495 9 N -0.664 5.664 10 C 0.151 3.849 11 C -0.261 4.261 12 C -0.092 4.092 13 C -0.171 4.171 14 C 0.119 3.881 15 C -0.456 4.456 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.795 5.795 19 Si 0.908 3.092 20 H -0.259 1.259 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.210 4.210 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.279 0.721 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.199 -17.062 3.485 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.142 4.142 4 C -0.257 4.257 5 S 0.047 5.953 6 C -0.278 4.278 7 C 0.303 3.697 8 O -0.368 6.368 9 N -0.309 5.309 10 C 0.059 3.941 11 C -0.283 4.283 12 C -0.111 4.111 13 C -0.191 4.191 14 C 0.116 3.884 15 C -0.486 4.486 16 H 0.097 0.903 17 C -0.142 4.142 18 N -0.421 5.421 19 Si 0.732 3.268 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.231 4.231 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.084 -15.284 3.375 18.619 hybrid contribution 0.989 -1.000 -0.281 1.435 sum -9.095 -16.284 3.094 18.906 Atomic orbital electron populations 1.21771 0.95510 1.01655 1.02126 1.21524 0.96103 0.96070 1.02130 1.21322 0.91833 0.97409 1.03639 1.23550 0.99984 0.97543 1.04672 1.87667 1.00969 1.08657 1.98020 1.23505 0.97285 1.00233 1.06736 1.19604 0.82680 0.89688 0.77726 1.90805 1.62606 1.36975 1.46394 1.43324 1.05697 1.09023 1.72856 1.17414 0.94071 0.84295 0.98306 1.20025 0.99653 0.98664 1.09910 1.20458 0.98116 0.93402 0.99157 1.21356 0.98843 0.99064 0.99801 1.17500 0.91005 0.90502 0.89373 1.19623 0.95669 1.06054 1.27239 0.90261 1.25915 0.94589 0.99594 0.94126 1.69839 1.05513 1.32792 1.33955 0.86260 0.80864 0.81043 0.78588 1.18297 1.19706 1.20029 1.20983 1.03387 0.93580 1.05146 0.92574 0.92542 0.92694 0.91880 0.91912 0.90886 0.90846 0.90243 0.90298 0.87547 0.87380 0.76768 0.89298 0.89005 0.86270 0.90999 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.77 5.93 -26.73 -0.16 -0.93 16 3 C -0.10 -0.85 5.22 -26.73 -0.14 -0.99 16 4 C -0.11 -0.97 5.94 37.16 0.22 -0.75 16 5 S -0.18 -2.45 20.87 -107.50 -2.24 -4.70 16 6 C -0.13 -1.56 6.43 36.01 0.23 -1.33 16 7 C 0.52 9.31 7.58 -10.98 -0.08 9.22 16 8 O -0.49 -11.35 13.62 5.56 0.08 -11.27 16 9 N -0.66 -11.76 5.34 -9.91 -0.05 -11.81 16 10 C 0.15 3.44 6.25 -83.76 -0.52 2.92 16 11 C -0.26 -5.78 9.97 -39.10 -0.39 -6.17 16 12 C -0.09 -2.17 10.01 -39.70 -0.40 -2.57 16 13 C -0.17 -4.53 8.69 -38.84 -0.34 -4.87 16 14 C 0.12 3.33 5.57 -106.85 -0.59 2.73 16 15 C -0.46 -12.70 9.05 -37.74 -0.34 -13.04 16 16 H 0.08 2.19 7.90 -52.49 -0.41 1.78 16 17 C 0.07 1.94 5.16 -17.34 -0.09 1.85 16 18 N -0.80 -20.88 10.94 55.55 0.61 -20.28 16 19 Si 0.91 19.33 29.59 -169.99 -5.03 14.30 16 20 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 C -0.21 -5.52 8.39 -38.69 -0.32 -5.84 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.11 1.08 8.14 -51.92 -0.42 0.66 16 35 H 0.40 5.27 8.82 -40.82 -0.36 4.91 16 36 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.12 3.24 6.16 -52.49 -0.32 2.91 16 39 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 40 H 0.11 2.88 6.48 -52.48 -0.34 2.54 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -31.63 349.12 -10.01 -41.64 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.07 Total: 7.19 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -2.56 Total: -20.34 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.55 Total: -32.08 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.24 Total: -4.70 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.63 -10.01 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701225473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.798 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds