Wall clock time and date at job start Tue Mar 31 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47242 * 2 1 4 4 C 1.52998 * 109.47089 * 180.02562 * 3 2 1 5 5 S 1.81398 * 109.47074 * 180.02562 * 4 3 2 6 6 C 1.81399 * 102.99781 * 180.02562 * 5 4 3 7 7 C 1.50714 * 109.46756 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99654 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99611 * 179.97438 * 7 6 5 10 10 C 1.39934 * 119.99619 * 174.88694 * 9 7 6 11 11 C 1.39301 * 119.94407 * 145.78260 * 10 9 7 12 12 C 1.38479 * 120.42722 * 180.02562 * 11 10 9 13 13 C 1.37680 * 120.32453 * 359.97374 * 12 11 10 14 14 C 1.40744 * 119.88647 * 0.03052 * 13 12 11 15 15 C 1.41403 * 120.21462 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00505 * 205.16949 * 15 14 13 17 17 C 1.39933 * 120.00052 * 25.16661 * 15 14 13 18 18 N 1.30836 * 119.99792 * 16.80949 * 17 15 14 19 19 Si 1.86799 * 120.00348 * 196.80781 * 17 15 14 20 20 H 1.48497 * 109.47277 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47355 * 120.00170 * 19 17 15 22 22 H 1.48505 * 109.47113 * 240.00035 * 19 17 15 23 23 C 1.38238 * 119.95249 * 325.51636 * 10 9 7 24 24 H 1.09003 * 109.46851 * 299.99691 * 1 2 3 25 25 H 1.08993 * 109.46953 * 59.99838 * 1 2 3 26 26 H 1.08997 * 109.46849 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47010 * 239.99787 * 2 1 3 28 28 H 1.09003 * 109.46900 * 120.00294 * 2 1 3 29 29 H 1.09003 * 109.46557 * 59.99992 * 3 2 1 30 30 H 1.08995 * 109.46859 * 300.00281 * 3 2 1 31 31 H 1.09001 * 109.47120 * 59.99814 * 4 3 2 32 32 H 1.09003 * 109.46944 * 300.00226 * 4 3 2 33 33 H 1.08994 * 109.46861 * 299.99314 * 6 5 4 34 34 H 1.08999 * 109.47419 * 60.00003 * 6 5 4 35 35 H 0.96995 * 120.00342 * 354.89338 * 9 7 6 36 36 H 1.07996 * 119.78208 * 359.97438 * 11 10 9 37 37 H 1.07998 * 119.83949 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.06071 * 180.02562 * 13 12 11 39 39 H 0.97004 * 119.99868 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.15793 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 16 4.1748 3.1527 0.0001 6 6 5.9772 2.9481 -0.0016 7 6 6.6365 4.3034 -0.0017 8 8 5.9572 5.3081 -0.0013 9 7 7.9809 4.3987 -0.0024 10 6 8.5933 5.6522 -0.1106 11 6 9.7911 5.9007 0.5558 12 6 10.4056 7.1377 0.4561 13 6 9.8389 8.1362 -0.3038 14 6 8.6288 7.8998 -0.9827 15 6 8.0404 8.9204 -1.7646 16 1 6.9757 8.9164 -1.9453 17 6 8.8377 9.9359 -2.3044 18 7 10.1349 9.7810 -2.3755 19 14 8.0501 11.5125 -2.9235 20 1 6.5792 11.4392 -2.7324 21 1 8.5915 12.6678 -2.1637 22 1 8.3532 11.6836 -4.3671 23 6 8.0117 6.6402 -0.8829 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9330 0.9287 -0.8908 32 1 3.9338 0.9284 0.8891 33 1 6.2810 2.3961 0.8878 34 1 6.2796 2.3973 -0.8922 35 1 8.5239 3.5984 0.0720 36 1 10.2430 5.1238 1.1546 37 1 11.3343 7.3199 0.9764 38 1 10.3219 9.0992 -0.3789 39 1 10.6877 10.4850 -2.7494 40 1 7.0854 6.4470 -1.4036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701225473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:03 Heat of formation + Delta-G solvation = -52.947666 kcal Electronic energy + Delta-G solvation = -19809.415016 eV Core-core repulsion = 16713.571370 eV Total energy + Delta-G solvation = -3095.843646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22790 -38.99252 -36.54097 -36.23703 -34.88082 -31.79858 -31.76751 -31.05544 -29.19797 -27.26940 -24.93537 -23.48574 -22.75461 -22.02603 -21.25806 -19.60642 -18.25568 -17.59734 -17.27263 -16.82843 -16.64564 -16.50508 -16.35210 -15.30471 -15.18648 -14.94798 -14.69174 -14.53819 -14.25003 -14.02696 -13.67638 -13.51861 -13.33932 -13.00832 -12.92283 -12.80244 -12.40035 -12.19664 -12.14139 -12.00952 -11.73949 -11.55541 -11.48951 -11.20773 -10.93448 -10.84097 -10.74354 -9.41812 -8.80930 -8.69971 -8.62162 -6.38997 0.43117 0.83033 0.97344 1.35037 1.44908 1.50618 1.61300 1.72068 2.18985 2.22341 2.71181 3.63036 3.74759 3.85313 3.94342 4.05512 4.20741 4.22654 4.37193 4.45342 4.58889 4.61422 4.69141 4.86023 4.94687 5.01589 5.06374 5.07696 5.10019 5.20217 5.25408 5.30854 5.34659 5.46222 5.72718 5.83236 6.05818 6.08993 6.32105 6.56241 6.66463 6.91601 6.98774 7.25607 8.31398 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.002836 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.641045 B = 9869.648149 C =11012.512973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.103 4.103 4 C -0.083 4.083 5 S -0.270 6.270 6 C -0.101 4.101 7 C 0.512 3.488 8 O -0.552 6.552 9 N -0.652 5.652 10 C 0.158 3.842 11 C -0.248 4.248 12 C -0.091 4.091 13 C -0.197 4.197 14 C 0.087 3.913 15 C -0.502 4.502 16 H 0.060 0.940 17 C 0.038 3.962 18 N -0.821 5.821 19 Si 0.981 3.019 20 H -0.267 1.267 21 H -0.258 1.258 22 H -0.260 1.260 23 C -0.238 4.238 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.424 0.576 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.290 0.710 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 -19.683 4.272 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.142 4.142 4 C -0.231 4.231 5 S -0.043 6.043 6 C -0.251 4.251 7 C 0.299 3.701 8 O -0.428 6.428 9 N -0.299 5.299 10 C 0.065 3.935 11 C -0.269 4.269 12 C -0.110 4.110 13 C -0.217 4.217 14 C 0.085 3.915 15 C -0.531 4.531 16 H 0.078 0.922 17 C -0.177 4.177 18 N -0.447 5.447 19 Si 0.802 3.198 20 H -0.191 1.191 21 H -0.182 1.182 22 H -0.185 1.185 23 C -0.260 4.260 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.263 0.737 36 H 0.153 0.847 37 H 0.143 0.857 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.237 -17.972 4.171 20.633 hybrid contribution 0.721 -0.363 -0.452 0.925 sum -8.516 -18.335 3.719 20.556 Atomic orbital electron populations 1.21789 0.95429 1.02234 1.01808 1.21489 0.96148 0.94578 1.02994 1.21341 0.91645 0.98571 1.02676 1.23565 0.99799 0.93354 1.06372 1.88078 1.03489 1.14459 1.98320 1.23380 0.95016 0.96641 1.10083 1.20600 0.82320 0.91354 0.75781 1.90800 1.63823 1.39668 1.48543 1.43198 1.06163 1.08180 1.72334 1.17491 0.94032 0.85522 0.96491 1.20490 0.98690 0.99084 1.08673 1.20855 0.98990 0.93160 0.97982 1.21317 0.99059 0.99684 1.01653 1.17847 0.92179 0.91316 0.90206 1.19741 0.95173 1.08481 1.29745 0.92170 1.26696 0.95046 1.02238 0.93753 1.69858 1.06532 1.34079 1.34224 0.85185 0.79204 0.76725 0.78725 1.19124 1.18177 1.18489 1.20935 1.03179 0.94689 1.07176 0.92866 0.92988 0.91641 0.91072 0.90897 0.91821 0.92048 0.88603 0.88305 0.83587 0.84207 0.73696 0.84713 0.85733 0.87737 0.89946 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.91 71.98 0.71 -0.94 16 2 C -0.11 -1.20 5.93 30.60 0.18 -1.02 16 3 C -0.10 -1.56 5.22 30.59 0.16 -1.40 16 4 C -0.08 -1.27 5.94 71.98 0.43 -0.84 16 5 S -0.27 -7.19 20.87 -56.49 -1.18 -8.37 16 6 C -0.10 -2.21 6.43 71.24 0.46 -1.75 16 7 C 0.51 17.92 7.58 87.66 0.66 18.58 16 8 O -0.55 -26.22 13.62 -3.03 -0.04 -26.26 16 9 N -0.65 -21.73 5.34 -303.64 -1.62 -23.35 16 10 C 0.16 7.11 6.25 38.10 0.24 7.34 16 11 C -0.25 -10.34 9.97 22.58 0.23 -10.12 16 12 C -0.09 -4.17 10.01 22.20 0.22 -3.95 16 13 C -0.20 -10.75 8.69 22.75 0.20 -10.55 16 14 C 0.09 5.13 5.57 -21.31 -0.12 5.01 16 15 C -0.50 -29.80 9.05 23.46 0.21 -29.58 16 16 H 0.06 3.63 7.90 -2.91 -0.02 3.61 16 17 C 0.04 2.01 5.16 85.25 0.44 2.45 16 18 N -0.82 -44.32 10.94 21.82 0.24 -44.08 16 19 Si 0.98 40.88 29.59 68.60 2.03 42.91 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 23 C -0.24 -13.10 8.39 22.85 0.19 -12.91 16 24 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.42 9.55 8.82 -92.71 -0.82 8.73 16 36 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 37 H 0.12 4.81 8.06 -2.91 -0.02 4.78 16 38 H 0.10 5.89 6.16 -2.91 -0.02 5.87 16 39 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 40 H 0.08 4.77 6.48 -2.91 -0.02 4.75 16 Total: -1.00 -75.16 349.12 3.85 -71.30 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.21 Total: 27.52 kcal Atomic # 6 Polarization: -43.90 SS G_CDS: 4.21 Total: -39.68 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -1.38 Total: -67.42 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.04 Total: -26.26 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 16 Polarization: -7.19 SS G_CDS: -1.18 Total: -8.37 kcal Total: -75.16 3.85 -71.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701225473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.354 kcal (2) G-P(sol) polarization free energy of solvation -75.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds