Wall clock time and date at job start Tue Mar 31 2020 08:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81392 * 103.00227 * 2 1 4 4 C 1.52999 * 109.47400 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47397 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.46996 * 305.00651 * 5 4 3 7 7 C 1.52995 * 109.47231 * 185.00352 * 5 4 3 8 8 N 1.46499 * 109.46711 * 65.00384 * 5 4 3 9 9 C 1.34783 * 119.99632 * 204.99841 * 8 5 4 10 10 O 1.21550 * 119.99922 * 359.97438 * 9 8 5 11 11 C 1.47883 * 119.99833 * 179.72764 * 9 8 5 12 12 C 1.39916 * 120.02667 * 359.97438 * 11 9 8 13 13 C 1.38330 * 120.36295 * 179.76471 * 12 11 9 14 14 C 1.37758 * 120.40656 * 0.51900 * 13 12 11 15 15 C 1.40745 * 120.04005 * 359.73902 * 14 13 12 16 16 C 1.41433 * 120.17794 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00237 * 334.93089 * 16 15 14 18 18 C 1.39938 * 120.00394 * 154.93239 * 16 15 14 19 19 N 1.30831 * 119.99567 * 342.57987 * 18 16 15 20 20 Si 1.86800 * 120.00402 * 162.57858 * 18 16 15 21 21 H 1.48497 * 109.47163 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46790 * 120.00106 * 20 18 16 23 23 H 1.48494 * 109.47218 * 240.00019 * 20 18 16 24 24 C 1.38999 * 120.02574 * 180.27918 * 11 9 8 25 25 H 1.09001 * 109.47410 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47102 * 299.99826 * 1 2 3 27 27 H 1.09007 * 109.46875 * 59.99803 * 1 2 3 28 28 H 1.09012 * 109.46797 * 60.00076 * 3 2 1 29 29 H 1.09000 * 109.47619 * 300.00549 * 3 2 1 30 30 H 1.08998 * 109.46785 * 60.00308 * 4 3 2 31 31 H 1.09000 * 109.47435 * 300.00971 * 4 3 2 32 32 H 1.08996 * 109.47528 * 180.02562 * 7 5 4 33 33 H 1.09005 * 109.47108 * 299.99975 * 7 5 4 34 34 H 1.08999 * 109.47273 * 59.99972 * 7 5 4 35 35 H 0.96991 * 120.00523 * 25.00228 * 8 5 4 36 36 H 1.08001 * 119.82302 * 0.02562 * 12 11 9 37 37 H 1.07993 * 119.79724 * 180.25786 * 13 12 11 38 38 H 1.08001 * 119.97887 * 179.76629 * 14 13 12 39 39 H 0.96997 * 119.99797 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.20022 * 359.94970 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7423 1.9399 0.0006 5 6 4.0865 3.4306 0.0013 6 1 3.5942 3.9175 -0.8405 7 6 5.6015 3.6043 -0.1239 8 7 3.6272 4.0372 1.2532 9 6 3.3501 5.3554 1.3014 10 8 3.4818 6.0408 0.3062 11 6 2.8807 5.9666 2.5635 12 6 2.7235 5.1770 3.7078 13 6 2.2895 5.7424 4.8933 14 6 1.9968 7.0869 4.9585 15 6 2.1437 7.8961 3.8163 16 6 1.8446 9.2770 3.8800 17 1 1.1488 9.6453 4.6194 18 6 2.4501 10.1662 2.9851 19 7 3.5231 9.8050 2.3294 20 14 1.7265 11.8688 2.7266 21 1 0.5224 12.0298 3.5806 22 1 2.7342 12.8959 3.0939 23 1 1.3481 12.0345 1.3003 24 6 2.5892 7.3248 2.6123 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8031 2.2370 0.8901 29 1 1.8031 2.2371 -0.8899 30 1 4.1616 1.4702 -0.8891 31 1 4.1609 1.4702 0.8908 32 1 5.8468 4.6663 -0.1230 33 1 6.0938 3.1174 0.7180 34 1 5.9432 3.1529 -1.0553 35 1 3.5226 3.4904 2.0474 36 1 2.9463 4.1210 3.6664 37 1 2.1753 5.1251 5.7721 38 1 1.6548 7.5204 5.8866 39 1 3.9426 10.4212 1.7088 40 1 2.7051 7.9373 1.7304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736060302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:11 Heat of formation + Delta-G solvation = -38.975664 kcal Electronic energy + Delta-G solvation = -20729.431043 eV Core-core repulsion = 17634.193269 eV Total energy + Delta-G solvation = -3095.237774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.44236 -37.28521 -36.02620 -33.77547 -32.21109 -30.47297 -29.52518 -29.30369 -29.02989 -25.34653 -24.19823 -22.79651 -21.09385 -20.55423 -19.62136 -17.77775 -16.46805 -16.20516 -16.02426 -15.13038 -14.75064 -14.70705 -14.41092 -14.01886 -13.95343 -13.76411 -13.39771 -13.19099 -12.98683 -12.76207 -12.52054 -12.45450 -12.03878 -11.69101 -11.54091 -11.29232 -11.17108 -11.09462 -10.84583 -10.71251 -10.50674 -10.18703 -10.03597 -9.70563 -9.24139 -9.02477 -8.70616 -7.89153 -7.65137 -7.53904 -6.81788 -4.43456 1.47752 2.18908 2.38592 2.78830 3.06761 3.11411 3.13158 3.65098 3.84783 3.90828 4.57783 4.63435 4.76190 4.86137 4.91914 4.94187 5.34743 5.40596 5.46988 5.49258 5.59070 5.62898 5.64923 5.81420 5.85820 6.03780 6.17435 6.25395 6.33081 6.70002 6.87885 6.97358 7.00108 7.19280 7.36214 7.68049 7.74073 7.90496 8.08019 8.17440 8.48823 8.78582 8.81419 8.94065 10.13039 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.019868 B = 0.003478 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.987346 B = 8049.268432 C = 8499.860668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.275 6.275 3 C -0.082 4.082 4 C -0.109 4.109 5 C 0.148 3.852 6 H 0.087 0.913 7 C -0.162 4.162 8 N -0.733 5.733 9 C 0.565 3.435 10 O -0.546 6.546 11 C -0.129 4.129 12 C -0.218 4.218 13 C -0.098 4.098 14 C -0.212 4.212 15 C 0.099 3.901 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.783 5.783 20 Si 0.909 3.091 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.271 1.271 24 C -0.092 4.092 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.284 0.716 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 -14.063 -4.165 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.049 6.049 3 C -0.230 4.230 4 C -0.148 4.148 5 C 0.041 3.959 6 H 0.105 0.895 7 C -0.221 4.221 8 N -0.387 5.387 9 C 0.356 3.644 10 O -0.424 6.424 11 C -0.132 4.132 12 C -0.238 4.238 13 C -0.116 4.116 14 C -0.232 4.232 15 C 0.096 3.904 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.408 5.408 20 Si 0.734 3.266 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.196 1.196 24 C -0.112 4.112 25 H 0.118 0.882 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.234 0.766 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.423 -14.362 -5.067 15.235 hybrid contribution -1.089 1.467 0.323 1.855 sum -1.512 -12.895 -4.744 13.823 Atomic orbital electron populations 1.23361 0.93987 1.06326 1.05162 1.86759 1.07708 1.12272 1.98140 1.23453 1.00420 0.93375 1.05776 1.21648 0.92835 0.96153 1.04135 1.20826 0.95034 0.91437 0.88615 0.89487 1.22168 0.95210 1.03140 1.01555 1.46083 1.70134 1.09708 1.12822 1.18844 0.75703 0.80911 0.88977 1.90693 1.53204 1.61663 1.36815 1.19485 1.06468 0.95348 0.91918 1.20339 1.12578 0.96986 0.93907 1.20438 1.00139 0.95029 0.96005 1.21106 1.10619 0.93897 0.97532 1.17604 0.89359 0.93311 0.90102 1.19619 1.23022 0.91468 1.14807 0.90058 1.25966 0.93449 1.01197 0.93983 1.69798 1.13851 1.37250 1.19865 0.86237 0.80113 0.81031 0.79257 1.18342 1.19910 1.19559 1.21635 0.99206 0.91472 0.98884 0.88225 0.90302 0.90506 0.89447 0.89899 0.89639 0.90404 0.91544 0.92485 0.91983 0.76639 0.89280 0.88926 0.88631 0.90499 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.76 101.05 1.09 0.11 16 2 S -0.27 -2.88 22.38 -107.50 -2.41 -5.28 16 3 C -0.08 -0.87 5.83 37.16 0.22 -0.66 16 4 C -0.11 -1.11 4.76 -26.73 -0.13 -1.23 16 5 C 0.15 1.94 2.57 -67.93 -0.17 1.76 16 6 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 7 C -0.16 -2.03 9.48 37.16 0.35 -1.68 16 8 N -0.73 -11.51 4.48 -54.74 -0.25 -11.76 16 9 C 0.56 11.96 7.74 -12.31 -0.10 11.87 16 10 O -0.55 -13.31 16.00 5.32 0.09 -13.23 16 11 C -0.13 -2.99 5.87 -105.04 -0.62 -3.61 16 12 C -0.22 -4.50 9.55 -38.92 -0.37 -4.87 16 13 C -0.10 -2.06 10.01 -39.72 -0.40 -2.46 16 14 C -0.21 -4.99 9.78 -38.81 -0.38 -5.37 16 15 C 0.10 2.59 5.57 -106.87 -0.59 2.00 16 16 C -0.46 -12.03 9.05 -37.73 -0.34 -12.37 16 17 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 18 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 19 N -0.78 -20.65 10.97 55.55 0.61 -20.04 16 20 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 21 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.09 -2.42 8.23 -38.44 -0.32 -2.74 16 25 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.09 1.00 7.75 -51.92 -0.40 0.60 16 29 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.40 5.51 6.62 -40.82 -0.27 5.24 16 36 H 0.09 1.51 6.38 -52.49 -0.33 1.18 16 37 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 39 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 40 H 0.13 3.81 5.77 -52.49 -0.30 3.50 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -29.20 348.76 -9.48 -38.68 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -5.90 Total: 10.23 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.85 Total: -17.50 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 0.36 Total: -31.80 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -2.41 Total: -5.28 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.20 -9.48 -38.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736060302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.293 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds