Wall clock time and date at job start Tue Mar 31 2020 07:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47330 * 2 1 4 4 O 1.21264 * 119.99810 * 0.02562 * 3 2 1 5 5 C 1.47014 * 120.00121 * 180.02562 * 3 2 1 6 6 C 1.39612 * 120.12361 * 359.72600 * 5 3 2 7 7 C 1.39269 * 119.69720 * 179.76368 * 6 5 3 8 8 C 1.47642 * 120.02976 * 180.22900 * 7 6 5 9 9 O 1.21604 * 120.00273 * 135.49222 * 8 7 6 10 10 N 1.34773 * 120.00406 * 315.49104 * 8 7 6 11 11 C 1.36888 * 120.00559 * 185.98586 * 10 8 7 12 12 H 1.07998 * 119.99849 * 358.57243 * 11 10 8 13 13 C 1.39034 * 120.00515 * 178.57713 * 11 10 8 14 14 N 1.31372 * 119.99663 * 13.31955 * 13 11 10 15 15 Si 1.86801 * 120.00296 * 193.32029 * 13 11 10 16 16 H 1.48502 * 109.47061 * 59.99792 * 15 13 11 17 17 H 1.48500 * 109.46789 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.46965 * 299.99642 * 15 13 11 19 19 C 1.46503 * 119.99596 * 5.98355 * 10 8 7 20 20 C 1.52992 * 109.47242 * 98.26289 * 19 10 8 21 21 C 1.39944 * 119.94145 * 0.48850 * 7 6 5 22 22 C 1.37849 * 120.25111 * 359.76574 * 21 7 6 23 23 C 1.38471 * 120.30360 * 0.02562 * 22 21 7 24 24 F 1.35099 * 119.97194 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.47017 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46843 * 299.99951 * 1 2 3 27 27 H 1.08996 * 109.47216 * 59.99815 * 1 2 3 28 28 H 1.09004 * 109.47636 * 239.99779 * 2 1 3 29 29 H 1.09005 * 109.47342 * 119.99984 * 2 1 3 30 30 H 1.07997 * 120.14923 * 0.02562 * 6 5 3 31 31 H 0.97004 * 119.99783 * 180.02562 * 14 13 11 32 32 H 1.09003 * 109.47151 * 218.26687 * 19 10 8 33 33 H 1.08999 * 109.47399 * 338.25812 * 19 10 8 34 34 H 1.08999 * 109.47298 * 311.89081 * 20 19 10 35 35 H 1.09010 * 109.47171 * 71.89345 * 20 19 10 36 36 H 1.09001 * 109.47289 * 191.89087 * 20 19 10 37 37 H 1.08005 * 119.87521 * 179.74387 * 21 7 6 38 38 H 1.07999 * 119.84893 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3425 0.0005 5 6 3.4777 1.6895 -0.0006 6 6 4.3872 0.6303 0.0047 7 6 5.7546 0.8949 -0.0009 8 6 6.7228 -0.2197 -0.0005 9 8 7.6860 -0.1886 -0.7422 10 7 6.5393 -1.2716 0.8218 11 6 7.4974 -2.2451 0.9121 12 1 8.3899 -2.1822 0.3074 13 6 7.3215 -3.3151 1.7824 14 7 6.1434 -3.5384 2.3190 15 14 8.7603 -4.4350 2.1886 16 1 9.8463 -3.6385 2.8143 17 1 8.3144 -5.4908 3.1329 18 1 9.2640 -5.0656 0.9422 19 6 5.3144 -1.3731 1.6190 20 6 4.3251 -2.3057 0.9174 21 6 6.2099 2.2182 -0.0014 22 6 5.3099 3.2623 -0.0012 23 6 3.9482 3.0110 0.0000 24 9 3.0720 4.0394 0.0007 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0321 -0.3896 0.0087 31 1 6.0207 -4.2846 2.9265 32 1 5.5543 -1.7727 2.6044 33 1 4.8681 -0.3845 1.7268 34 1 4.2468 -2.0280 -0.1337 35 1 4.6770 -3.3344 0.9962 36 1 3.3466 -2.2192 1.3898 37 1 7.2705 2.4221 -0.0015 38 1 5.6684 4.2810 -0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756950226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:27 Heat of formation + Delta-G solvation = -67.494014 kcal Electronic energy + Delta-G solvation = -23961.385898 eV Core-core repulsion = 20298.698299 eV Total energy + Delta-G solvation = -3662.687599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.77360 -40.07210 -39.02533 -37.31954 -35.38203 -33.05966 -32.16255 -31.21530 -30.38595 -29.56862 -25.64774 -25.19274 -23.28429 -22.84253 -22.06398 -20.29538 -18.91806 -17.54180 -17.17025 -16.73640 -16.39018 -15.79866 -15.58602 -15.09242 -14.89651 -14.64943 -14.26135 -14.19909 -13.86160 -13.29194 -13.14315 -13.01313 -12.64875 -12.33378 -12.20143 -12.14420 -11.75603 -11.66852 -11.40797 -11.23942 -11.14644 -11.04570 -10.89552 -10.47378 -10.30198 -10.14254 -9.62225 -9.08536 -8.95102 -8.73806 -8.38720 -7.98083 -6.43985 -3.97155 0.63821 1.16382 2.40088 3.06256 3.14374 3.17838 3.47129 3.90702 3.92818 4.06153 4.28397 4.59861 4.72863 4.94580 4.96813 5.11087 5.14554 5.20412 5.34786 5.42510 5.63511 5.81907 5.89438 5.90743 5.96452 6.04596 6.11531 6.15991 6.20414 6.40487 6.50634 6.54052 6.62474 6.86746 7.19248 7.40860 7.55579 7.65166 7.87234 8.32342 8.97699 9.21266 9.76675 10.43239 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.005207 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.929852 B = 5375.700603 C = 6548.592343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.173 4.173 3 C 0.398 3.602 4 O -0.450 6.450 5 C -0.218 4.218 6 C -0.037 4.037 7 C -0.111 4.111 8 C 0.465 3.535 9 O -0.590 6.590 10 N -0.423 5.423 11 C -0.292 4.292 12 H 0.108 0.892 13 C 0.025 3.975 14 N -0.868 5.868 15 Si 0.934 3.066 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.101 3.899 20 C -0.156 4.156 21 C -0.023 4.023 22 C -0.175 4.175 23 C 0.150 3.850 24 F -0.123 7.123 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.160 0.840 31 H 0.269 0.731 32 H 0.120 0.880 33 H 0.037 0.963 34 H 0.026 0.974 35 H 0.105 0.895 36 H 0.038 0.962 37 H 0.142 0.858 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.233 4.843 -0.186 8.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.210 4.210 3 C 0.276 3.724 4 O -0.325 6.325 5 C -0.220 4.220 6 C -0.055 4.055 7 C -0.114 4.114 8 C 0.254 3.746 9 O -0.477 6.477 10 N -0.139 5.139 11 C -0.419 4.419 12 H 0.126 0.874 13 C -0.177 4.177 14 N -0.509 5.509 15 Si 0.760 3.240 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.021 4.021 20 C -0.214 4.214 21 C -0.042 4.042 22 C -0.193 4.193 23 C 0.130 3.870 24 F -0.101 7.101 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.177 0.823 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.160 0.840 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.295 5.172 -0.376 8.950 hybrid contribution 0.492 -0.394 0.273 0.687 sum -6.803 4.778 -0.103 8.314 Atomic orbital electron populations 1.21571 0.93570 1.01822 1.02855 1.22042 0.98328 0.95330 1.05303 1.22346 0.87090 0.91596 0.71323 1.90538 1.58093 1.47661 1.36230 1.20520 0.96177 0.92505 1.12780 1.22275 0.91770 0.99838 0.91646 1.20319 0.93789 0.95164 1.02174 1.17599 0.87602 0.83956 0.85484 1.90634 1.33211 1.80732 1.43120 1.43806 1.17066 1.18205 1.34832 1.19854 0.99839 1.00404 1.21835 0.87399 1.25338 0.97796 0.97849 0.96682 1.70019 1.20427 1.29685 1.30749 0.85857 0.80599 0.78889 0.78631 1.19797 1.20766 1.19745 1.22117 0.84660 0.95940 0.99429 1.22437 0.96859 1.05433 0.96626 1.21284 1.00408 0.90476 0.92038 1.21014 0.90700 1.00911 1.06718 1.18023 0.87105 0.83468 0.98419 1.91543 1.68689 1.56992 1.92909 0.91892 0.92186 0.92284 0.88109 0.87726 0.82295 0.91949 0.86236 0.94446 0.95486 0.87685 0.94329 0.84017 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.20 37.15 0.34 -1.18 16 2 C -0.17 -2.04 5.02 -27.88 -0.14 -2.18 16 3 C 0.40 5.97 7.11 -30.75 -0.22 5.75 16 4 O -0.45 -7.78 14.96 5.57 0.08 -7.70 16 5 C -0.22 -3.45 5.87 -105.06 -0.62 -4.07 16 6 C -0.04 -0.61 6.79 -38.69 -0.26 -0.87 16 7 C -0.11 -2.09 5.13 -105.04 -0.54 -2.63 16 8 C 0.46 10.84 7.22 -12.42 -0.09 10.75 16 9 O -0.59 -15.76 16.57 5.27 0.09 -15.67 16 10 N -0.42 -10.01 2.64 -115.96 -0.31 -10.31 16 11 C -0.29 -7.43 9.49 -15.00 -0.14 -7.58 16 12 H 0.11 2.92 7.20 -52.49 -0.38 2.54 16 13 C 0.03 0.60 5.32 -17.45 -0.09 0.50 16 14 N -0.87 -19.83 7.28 55.50 0.40 -19.43 16 15 Si 0.93 19.02 29.57 -169.99 -5.03 13.99 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 17 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 C 0.10 2.07 4.88 -4.04 -0.02 2.05 16 20 C -0.16 -2.88 8.51 37.15 0.32 -2.56 16 21 C -0.02 -0.37 9.67 -39.09 -0.38 -0.75 16 22 C -0.17 -2.51 9.99 -39.64 -0.40 -2.90 16 23 C 0.15 2.38 7.30 -38.73 -0.28 2.10 16 24 F -0.12 -2.04 15.53 2.25 0.03 -2.00 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 29 H 0.10 1.15 7.69 -51.93 -0.40 0.75 16 30 H 0.16 2.54 2.72 -52.49 -0.14 2.39 16 31 H 0.27 5.88 8.31 -40.82 -0.34 5.54 16 32 H 0.12 2.66 5.75 -51.93 -0.30 2.36 16 33 H 0.04 0.69 4.96 -51.93 -0.26 0.43 16 34 H 0.03 0.48 6.60 -51.93 -0.34 0.13 16 35 H 0.10 2.23 5.82 -51.92 -0.30 1.92 16 36 H 0.04 0.59 7.75 -51.93 -0.40 0.18 16 37 H 0.14 2.18 8.06 -52.48 -0.42 1.76 16 38 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 314.73 15.07 4.74 4.74 Total: -1.00 -28.43 314.73 -6.69 -35.12 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.19 Total: 4.82 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.52 Total: -3.55 kcal Atomic # 7 Polarization: -29.84 SS G_CDS: 0.10 Total: -29.74 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.17 Total: -23.37 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.03 Total: -2.00 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.43 -6.69 -35.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756950226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.372 kcal (2) G-P(sol) polarization free energy of solvation -28.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds