Wall clock time and date at job start Tue Mar 31 2020 07:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47330 * 2 1 4 4 O 1.21264 * 119.99810 * 0.02562 * 3 2 1 5 5 C 1.47014 * 120.00121 * 180.02562 * 3 2 1 6 6 C 1.39612 * 120.12361 * 359.72600 * 5 3 2 7 7 C 1.39269 * 119.69720 * 179.76368 * 6 5 3 8 8 C 1.47642 * 120.02976 * 180.22900 * 7 6 5 9 9 O 1.21604 * 120.00273 * 135.49222 * 8 7 6 10 10 N 1.34773 * 120.00406 * 315.49104 * 8 7 6 11 11 C 1.36888 * 120.00559 * 185.98586 * 10 8 7 12 12 H 1.07998 * 119.99849 * 358.57243 * 11 10 8 13 13 C 1.39034 * 120.00515 * 178.57713 * 11 10 8 14 14 N 1.31372 * 119.99663 * 13.31955 * 13 11 10 15 15 Si 1.86801 * 120.00296 * 193.32029 * 13 11 10 16 16 H 1.48502 * 109.47061 * 59.99792 * 15 13 11 17 17 H 1.48500 * 109.46789 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.46965 * 299.99642 * 15 13 11 19 19 C 1.46503 * 119.99596 * 5.98355 * 10 8 7 20 20 C 1.52992 * 109.47242 * 98.26289 * 19 10 8 21 21 C 1.39944 * 119.94145 * 0.48850 * 7 6 5 22 22 C 1.37849 * 120.25111 * 359.76574 * 21 7 6 23 23 C 1.38471 * 120.30360 * 0.02562 * 22 21 7 24 24 F 1.35099 * 119.97194 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.47017 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46843 * 299.99951 * 1 2 3 27 27 H 1.08996 * 109.47216 * 59.99815 * 1 2 3 28 28 H 1.09004 * 109.47636 * 239.99779 * 2 1 3 29 29 H 1.09005 * 109.47342 * 119.99984 * 2 1 3 30 30 H 1.07997 * 120.14923 * 0.02562 * 6 5 3 31 31 H 0.97004 * 119.99783 * 180.02562 * 14 13 11 32 32 H 1.09003 * 109.47151 * 218.26687 * 19 10 8 33 33 H 1.08999 * 109.47399 * 338.25812 * 19 10 8 34 34 H 1.08999 * 109.47298 * 311.89081 * 20 19 10 35 35 H 1.09010 * 109.47171 * 71.89345 * 20 19 10 36 36 H 1.09001 * 109.47289 * 191.89087 * 20 19 10 37 37 H 1.08005 * 119.87521 * 179.74387 * 21 7 6 38 38 H 1.07999 * 119.84893 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3425 0.0005 5 6 3.4777 1.6895 -0.0006 6 6 4.3872 0.6303 0.0047 7 6 5.7546 0.8949 -0.0009 8 6 6.7228 -0.2197 -0.0005 9 8 7.6860 -0.1886 -0.7422 10 7 6.5393 -1.2716 0.8218 11 6 7.4974 -2.2451 0.9121 12 1 8.3899 -2.1822 0.3074 13 6 7.3215 -3.3151 1.7824 14 7 6.1434 -3.5384 2.3190 15 14 8.7603 -4.4350 2.1886 16 1 9.8463 -3.6385 2.8143 17 1 8.3144 -5.4908 3.1329 18 1 9.2640 -5.0656 0.9422 19 6 5.3144 -1.3731 1.6190 20 6 4.3251 -2.3057 0.9174 21 6 6.2099 2.2182 -0.0014 22 6 5.3099 3.2623 -0.0012 23 6 3.9482 3.0110 0.0000 24 9 3.0720 4.0394 0.0007 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0321 -0.3896 0.0087 31 1 6.0207 -4.2846 2.9265 32 1 5.5543 -1.7727 2.6044 33 1 4.8681 -0.3845 1.7268 34 1 4.2468 -2.0280 -0.1337 35 1 4.6770 -3.3344 0.9962 36 1 3.3466 -2.2192 1.3898 37 1 7.2705 2.4221 -0.0015 38 1 5.6684 4.2810 -0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756950226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:27 Heat of formation + Delta-G solvation = -82.099247 kcal Electronic energy + Delta-G solvation = -23962.019229 eV Core-core repulsion = 20298.698299 eV Total energy + Delta-G solvation = -3663.320929 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.06738 -41.47852 -40.44401 -38.76833 -37.18710 -34.20527 -33.79346 -32.44227 -31.88097 -31.12979 -27.21972 -26.47838 -24.53391 -24.30426 -23.58740 -21.63401 -20.28164 -18.91688 -18.81593 -18.34779 -17.67440 -17.11186 -16.94529 -16.52066 -16.20100 -15.96565 -15.89838 -15.70283 -15.32651 -14.84102 -14.42756 -14.22192 -14.12390 -13.78136 -13.59734 -13.20714 -13.12581 -13.06482 -12.85877 -12.63010 -12.53426 -12.45518 -12.09329 -12.06901 -11.95048 -11.76967 -10.83792 -10.78098 -10.49759 -10.28066 -9.82650 -9.74593 -8.23482 -5.86226 -0.63530 -0.14582 1.17288 1.42772 1.46832 1.54710 1.94940 2.25289 2.53285 2.79784 2.94813 3.02275 3.12563 3.50709 3.74733 3.90067 4.02038 4.10845 4.24837 4.29505 4.45151 4.54741 4.69540 4.73620 4.85401 4.90697 4.93083 4.95915 5.03014 5.04884 5.15680 5.25948 5.32985 5.40448 5.58019 5.64355 6.02364 6.07862 6.39953 6.52064 7.14322 7.42366 7.97372 8.60566 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.005207 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.929852 B = 5375.700603 C = 6548.592343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.172 4.172 3 C 0.400 3.600 4 O -0.476 6.476 5 C -0.220 4.220 6 C -0.027 4.027 7 C -0.133 4.133 8 C 0.454 3.546 9 O -0.638 6.638 10 N -0.431 5.431 11 C -0.338 4.338 12 H 0.077 0.923 13 C 0.005 3.995 14 N -0.862 5.862 15 Si 0.988 3.012 16 H -0.277 1.277 17 H -0.267 1.267 18 H -0.277 1.277 19 C 0.103 3.897 20 C -0.148 4.148 21 C -0.022 4.022 22 C -0.155 4.155 23 C 0.145 3.855 24 F -0.126 7.126 25 H 0.084 0.916 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.166 0.834 31 H 0.276 0.724 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.031 0.969 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.147 0.853 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 4.880 0.524 9.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.209 4.209 3 C 0.279 3.721 4 O -0.353 6.353 5 C -0.221 4.221 6 C -0.045 4.045 7 C -0.136 4.136 8 C 0.245 3.755 9 O -0.529 6.529 10 N -0.146 5.146 11 C -0.465 4.465 12 H 0.095 0.905 13 C -0.198 4.198 14 N -0.501 5.501 15 Si 0.812 3.188 16 H -0.203 1.203 17 H -0.191 1.191 18 H -0.203 1.203 19 C -0.019 4.019 20 C -0.205 4.205 21 C -0.042 4.042 22 C -0.173 4.173 23 C 0.125 3.875 24 F -0.104 7.104 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.183 0.817 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.165 0.835 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.804 5.199 0.362 10.231 hybrid contribution 0.897 -0.348 0.062 0.964 sum -7.906 4.852 0.424 9.286 Atomic orbital electron populations 1.21579 0.92767 1.03077 1.02221 1.22135 0.99033 0.93132 1.06582 1.22745 0.86335 0.92820 0.70159 1.90535 1.58399 1.48770 1.37599 1.20677 0.96791 0.92343 1.12331 1.22162 0.90734 1.00361 0.91272 1.20065 0.93812 0.94608 1.05131 1.18249 0.87830 0.84740 0.84702 1.90579 1.35440 1.81844 1.45008 1.44002 1.17658 1.17972 1.34974 1.19694 1.00316 1.02615 1.23899 0.90460 1.25900 0.99859 0.98186 0.95819 1.70115 1.20714 1.29559 1.29706 0.85065 0.78008 0.77465 0.78215 1.20257 1.19094 1.20273 1.22169 0.84018 0.97535 0.98215 1.22291 0.97991 1.03087 0.97157 1.21386 1.01179 0.89941 0.91651 1.21241 0.89621 1.01984 1.04464 1.18287 0.87668 0.83503 0.98018 1.91544 1.68894 1.57075 1.92884 0.89666 0.92854 0.92958 0.86617 0.86309 0.81661 0.91323 0.88098 0.92292 0.95034 0.90334 0.90568 0.83511 0.80583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.20 71.98 0.66 -1.97 16 2 C -0.17 -3.55 5.02 29.85 0.15 -3.40 16 3 C 0.40 11.12 7.11 27.99 0.20 11.32 16 4 O -0.48 -15.68 14.96 -2.98 -0.04 -15.72 16 5 C -0.22 -6.50 5.87 -20.15 -0.12 -6.62 16 6 C -0.03 -0.84 6.79 22.85 0.16 -0.69 16 7 C -0.13 -4.94 5.13 -20.13 -0.10 -5.04 16 8 C 0.45 21.75 7.22 86.73 0.63 22.37 16 9 O -0.64 -35.62 16.57 -4.04 -0.07 -35.69 16 10 N -0.43 -20.80 2.64 -639.04 -1.69 -22.48 16 11 C -0.34 -17.80 9.49 84.10 0.80 -17.01 16 12 H 0.08 4.45 7.20 -2.91 -0.02 4.43 16 13 C 0.01 0.24 5.32 84.95 0.45 0.69 16 14 N -0.86 -38.81 7.28 21.68 0.16 -38.66 16 15 Si 0.99 39.01 29.57 68.60 2.03 41.04 16 16 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 18 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 19 C 0.10 4.11 4.88 86.38 0.42 4.53 16 20 C -0.15 -5.19 8.51 71.98 0.61 -4.58 16 21 C -0.02 -0.70 9.67 22.59 0.22 -0.48 16 22 C -0.15 -4.04 9.99 22.23 0.22 -3.82 16 23 C 0.15 4.28 7.30 22.82 0.17 4.44 16 24 F -0.13 -3.89 15.53 44.97 0.70 -3.19 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 27 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 28 H 0.12 2.09 8.09 -2.38 -0.02 2.07 16 29 H 0.12 2.15 7.69 -2.38 -0.02 2.13 16 30 H 0.17 4.94 2.72 -2.91 -0.01 4.93 16 31 H 0.28 11.64 8.31 -92.71 -0.77 10.87 16 32 H 0.10 4.44 5.75 -2.39 -0.01 4.42 16 33 H 0.06 2.08 4.96 -2.39 -0.01 2.07 16 34 H 0.03 1.07 6.60 -2.39 -0.02 1.05 16 35 H 0.08 3.24 5.82 -2.38 -0.01 3.22 16 36 H 0.08 2.06 7.75 -2.39 -0.02 2.05 16 37 H 0.15 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -63.25 314.73 6.66 -56.59 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 1.11 Total: 18.37 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 4.46 Total: -0.25 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -1.53 Total: -61.14 kcal Atomic # 8 Polarization: -51.30 SS G_CDS: -0.11 Total: -51.41 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.70 Total: -3.19 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -63.25 6.66 -56.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756950226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.506 kcal (2) G-P(sol) polarization free energy of solvation -63.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds