Wall clock time and date at job start Tue Mar 31 2020 07:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47188 * 2 1 4 4 O 1.21272 * 119.99774 * 359.97438 * 3 2 1 5 5 C 1.47008 * 120.00081 * 179.97438 * 3 2 1 6 6 C 1.39630 * 120.12585 * 0.27516 * 5 3 2 7 7 C 1.39199 * 119.70146 * 180.20615 * 6 5 3 8 8 C 1.47762 * 120.02015 * 179.79460 * 7 6 5 9 9 O 1.21569 * 119.99983 * 20.33571 * 8 7 6 10 10 N 1.34771 * 120.00069 * 200.34262 * 8 7 6 11 11 C 1.46501 * 119.99901 * 7.00918 * 10 8 7 12 12 C 1.46500 * 120.00236 * 187.00689 * 10 8 7 13 13 C 1.50696 * 109.47427 * 270.00479 * 12 10 8 14 14 H 1.07999 * 119.99984 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00200 * 180.02562 * 13 12 10 16 16 N 1.31514 * 119.99672 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99963 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47430 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47365 * 119.99819 * 17 15 13 20 20 H 1.48501 * 109.47008 * 239.99531 * 17 15 13 21 21 C 1.39879 * 119.95704 * 359.51454 * 7 6 5 22 22 C 1.37868 * 120.25527 * 0.25677 * 21 7 6 23 23 C 1.38449 * 120.30117 * 359.97405 * 22 21 7 24 24 F 1.35102 * 119.98595 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.47393 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47376 * 300.00146 * 1 2 3 27 27 H 1.09004 * 109.47221 * 60.00402 * 1 2 3 28 28 H 1.09002 * 109.47376 * 239.99854 * 2 1 3 29 29 H 1.09004 * 109.47221 * 119.99598 * 2 1 3 30 30 H 1.07997 * 120.14767 * 359.97438 * 6 5 3 31 31 H 1.09002 * 109.47328 * 267.67374 * 11 10 8 32 32 H 1.08996 * 109.47147 * 27.67517 * 11 10 8 33 33 H 1.09004 * 109.47083 * 147.67485 * 11 10 8 34 34 H 1.08997 * 109.47335 * 149.99978 * 12 10 8 35 35 H 1.09001 * 109.46731 * 30.00054 * 12 10 8 36 36 H 0.97000 * 119.99897 * 180.02562 * 16 15 13 37 37 H 1.08003 * 119.87229 * 180.27458 * 21 7 6 38 38 H 1.08000 * 119.84787 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 6 3.4777 1.6895 0.0006 6 6 4.3873 0.6302 -0.0047 7 6 5.7540 0.8947 0.0002 8 6 6.7228 -0.2210 -0.0007 9 8 6.3771 -1.3260 -0.3713 10 7 7.9898 -0.0136 0.4095 11 6 8.3673 1.2731 0.9996 12 6 8.9894 -1.0748 0.2654 13 6 8.9953 -1.9312 1.5053 14 1 8.3220 -1.7072 2.3195 15 6 9.8609 -3.0001 1.6008 16 7 10.6811 -3.2726 0.6096 17 14 9.8686 -4.0612 3.1382 18 1 8.8595 -3.5479 4.0991 19 1 9.5382 -5.4625 2.7741 20 1 11.2147 -4.0166 3.7636 21 6 6.2095 2.2172 0.0002 22 6 5.3097 3.2618 0.0005 23 6 3.9481 3.0110 0.0005 24 9 3.0721 4.0394 0.0003 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0322 -0.3897 -0.0088 31 1 8.7434 1.9344 0.2190 32 1 7.4953 1.7265 1.4709 33 1 9.1441 1.1157 1.7479 34 1 9.9746 -0.6295 0.1267 35 1 8.7437 -1.6902 -0.6000 36 1 11.2898 -4.0248 0.6766 37 1 7.2701 2.4208 -0.0005 38 1 5.6687 4.2804 0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756950421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:31 Heat of formation + Delta-G solvation = -74.318132 kcal Electronic energy + Delta-G solvation = -22951.829111 eV Core-core repulsion = 19288.845596 eV Total energy + Delta-G solvation = -3662.983515 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.09321 -40.38247 -39.39646 -37.60497 -35.21808 -33.25528 -32.81224 -31.54717 -30.89590 -27.95443 -26.45685 -25.51172 -24.04125 -23.28316 -22.05726 -20.24645 -19.01599 -17.76054 -17.25482 -16.65643 -16.62742 -16.05277 -15.67690 -15.39071 -15.32909 -14.89120 -14.55168 -14.42507 -14.11875 -13.64828 -13.35474 -13.31594 -12.87072 -12.57489 -12.48055 -12.40076 -12.04913 -11.96770 -11.77256 -11.37774 -11.34741 -11.04957 -10.93303 -10.66408 -10.23450 -9.87433 -9.71523 -9.36629 -9.23259 -8.87387 -8.50715 -7.82335 -6.11569 -4.16413 0.28507 0.77894 2.08585 3.05200 3.25814 3.33779 3.37193 3.58190 3.70592 3.86735 3.95504 4.37979 4.40923 4.67959 4.72607 4.81677 4.93105 4.96063 5.04677 5.23145 5.35765 5.39381 5.56830 5.61513 5.64697 5.68358 5.73402 5.78475 5.82943 5.99263 6.05343 6.06839 6.48120 6.91452 7.29453 7.31551 7.37830 7.84117 8.13270 8.19966 8.75695 8.91501 9.48960 10.96678 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.003818 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.414301 B = 7331.966309 C = 8255.475742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.171 4.171 3 C 0.398 3.602 4 O -0.446 6.446 5 C -0.220 4.220 6 C 0.008 3.992 7 C -0.143 4.143 8 C 0.545 3.455 9 O -0.529 6.529 10 N -0.593 5.593 11 C 0.068 3.932 12 C 0.246 3.754 13 C -0.527 4.527 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.283 1.283 21 C -0.051 4.051 22 C -0.178 4.178 23 C 0.168 3.832 24 F -0.118 7.118 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.153 0.847 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.167 0.833 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.809 12.068 -0.949 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.209 4.209 3 C 0.275 3.725 4 O -0.321 6.321 5 C -0.222 4.222 6 C -0.011 4.011 7 C -0.147 4.147 8 C 0.332 3.668 9 O -0.407 6.407 10 N -0.324 5.324 11 C -0.075 4.075 12 C 0.127 3.873 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.209 1.209 21 C -0.069 4.069 22 C -0.197 4.197 23 C 0.148 3.852 24 F -0.096 7.096 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.171 0.829 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.184 0.816 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.263 11.864 -1.197 17.104 hybrid contribution 0.186 -0.408 0.883 0.990 sum -12.077 11.456 -0.314 16.649 Atomic orbital electron populations 1.21584 0.93467 1.01951 1.02958 1.22011 0.98443 0.95085 1.05336 1.22346 0.86897 0.91777 0.71468 1.90563 1.57991 1.47635 1.35885 1.20569 0.96446 0.92419 1.12789 1.21492 0.91031 0.99182 0.89356 1.20331 0.94443 0.94381 1.05546 1.17982 0.82182 0.87220 0.79452 1.90778 1.77370 1.24150 1.48410 1.48074 1.09970 1.15659 1.58678 1.22248 1.01319 0.85892 0.98031 1.19374 0.85177 0.84387 0.98365 1.21439 1.20379 1.12644 1.02130 0.92284 1.24932 0.95241 0.97165 0.96721 1.69934 1.22773 1.29265 1.31360 0.86430 0.77716 0.80388 0.82819 1.19783 1.20817 1.20945 1.22546 1.02293 0.90970 0.91109 1.21130 0.90622 1.01301 1.06615 1.18155 0.87281 0.83544 0.96247 1.91577 1.68637 1.56848 1.92537 0.91818 0.92171 0.92160 0.87807 0.87866 0.82923 0.92819 0.91231 0.90348 0.94606 0.93705 0.92684 0.81566 0.83620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.20 37.16 0.34 -0.94 16 2 C -0.17 -1.62 5.02 -27.88 -0.14 -1.76 16 3 C 0.40 4.96 7.11 -30.75 -0.22 4.74 16 4 O -0.45 -6.73 14.96 5.56 0.08 -6.64 16 5 C -0.22 -2.81 5.87 -105.06 -0.62 -3.42 16 6 C 0.01 0.11 9.00 -38.71 -0.35 -0.24 16 7 C -0.14 -2.10 5.55 -105.03 -0.58 -2.69 16 8 C 0.55 10.65 7.51 -12.37 -0.09 10.56 16 9 O -0.53 -12.50 16.17 5.31 0.09 -12.42 16 10 N -0.59 -11.64 2.86 -184.11 -0.53 -12.17 16 11 C 0.07 0.95 8.64 59.85 0.52 1.47 16 12 C 0.25 6.07 5.12 -5.20 -0.03 6.04 16 13 C -0.53 -14.37 9.39 -34.44 -0.32 -14.70 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 17 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.05 -0.59 7.61 -39.10 -0.30 -0.88 16 22 C -0.18 -1.87 9.99 -39.64 -0.40 -2.26 16 23 C 0.17 2.12 7.30 -38.74 -0.28 1.84 16 24 F -0.12 -1.63 15.53 2.25 0.03 -1.60 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 27 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 28 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 29 H 0.10 0.86 8.09 -51.93 -0.42 0.44 16 30 H 0.15 1.92 6.76 -52.49 -0.35 1.57 16 31 H 0.05 0.59 6.90 -51.93 -0.36 0.23 16 32 H 0.07 0.81 5.39 -51.93 -0.28 0.53 16 33 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 34 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 35 H 0.04 1.25 7.53 -51.93 -0.39 0.86 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.17 1.61 4.00 -52.48 -0.21 1.40 16 38 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -33.28 327.86 -6.73 -40.01 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -4.50 Total: -2.71 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.56 Total: -0.65 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.21 Total: -37.18 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.17 Total: -19.06 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.03 Total: -1.60 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.28 -6.73 -40.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756950421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.306 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds