Wall clock time and date at job start Tue Mar 31 2020 07:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47188 * 2 1 4 4 O 1.21272 * 119.99774 * 359.97438 * 3 2 1 5 5 C 1.47008 * 120.00081 * 179.97438 * 3 2 1 6 6 C 1.39630 * 120.12585 * 0.27516 * 5 3 2 7 7 C 1.39199 * 119.70146 * 180.20615 * 6 5 3 8 8 C 1.47762 * 120.02015 * 179.79460 * 7 6 5 9 9 O 1.21569 * 119.99983 * 20.33571 * 8 7 6 10 10 N 1.34771 * 120.00069 * 200.34262 * 8 7 6 11 11 C 1.46501 * 119.99901 * 7.00918 * 10 8 7 12 12 C 1.46500 * 120.00236 * 187.00689 * 10 8 7 13 13 C 1.50696 * 109.47427 * 270.00479 * 12 10 8 14 14 H 1.07999 * 119.99984 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00200 * 180.02562 * 13 12 10 16 16 N 1.31514 * 119.99672 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99963 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47430 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47365 * 119.99819 * 17 15 13 20 20 H 1.48501 * 109.47008 * 239.99531 * 17 15 13 21 21 C 1.39879 * 119.95704 * 359.51454 * 7 6 5 22 22 C 1.37868 * 120.25527 * 0.25677 * 21 7 6 23 23 C 1.38449 * 120.30117 * 359.97405 * 22 21 7 24 24 F 1.35102 * 119.98595 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.47393 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47376 * 300.00146 * 1 2 3 27 27 H 1.09004 * 109.47221 * 60.00402 * 1 2 3 28 28 H 1.09002 * 109.47376 * 239.99854 * 2 1 3 29 29 H 1.09004 * 109.47221 * 119.99598 * 2 1 3 30 30 H 1.07997 * 120.14767 * 359.97438 * 6 5 3 31 31 H 1.09002 * 109.47328 * 267.67374 * 11 10 8 32 32 H 1.08996 * 109.47147 * 27.67517 * 11 10 8 33 33 H 1.09004 * 109.47083 * 147.67485 * 11 10 8 34 34 H 1.08997 * 109.47335 * 149.99978 * 12 10 8 35 35 H 1.09001 * 109.46731 * 30.00054 * 12 10 8 36 36 H 0.97000 * 119.99897 * 180.02562 * 16 15 13 37 37 H 1.08003 * 119.87229 * 180.27458 * 21 7 6 38 38 H 1.08000 * 119.84787 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 6 3.4777 1.6895 0.0006 6 6 4.3873 0.6302 -0.0047 7 6 5.7540 0.8947 0.0002 8 6 6.7228 -0.2210 -0.0007 9 8 6.3771 -1.3260 -0.3713 10 7 7.9898 -0.0136 0.4095 11 6 8.3673 1.2731 0.9996 12 6 8.9894 -1.0748 0.2654 13 6 8.9953 -1.9312 1.5053 14 1 8.3220 -1.7072 2.3195 15 6 9.8609 -3.0001 1.6008 16 7 10.6811 -3.2726 0.6096 17 14 9.8686 -4.0612 3.1382 18 1 8.8595 -3.5479 4.0991 19 1 9.5382 -5.4625 2.7741 20 1 11.2147 -4.0166 3.7636 21 6 6.2095 2.2172 0.0002 22 6 5.3097 3.2618 0.0005 23 6 3.9481 3.0110 0.0005 24 9 3.0721 4.0394 0.0003 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0322 -0.3897 -0.0088 31 1 8.7434 1.9344 0.2190 32 1 7.4953 1.7265 1.4709 33 1 9.1441 1.1157 1.7479 34 1 9.9746 -0.6295 0.1267 35 1 8.7437 -1.6902 -0.6000 36 1 11.2898 -4.0248 0.6766 37 1 7.2701 2.4208 -0.0005 38 1 5.6687 4.2804 0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756950421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:31 Heat of formation + Delta-G solvation = -94.555444 kcal Electronic energy + Delta-G solvation = -22952.706667 eV Core-core repulsion = 19288.845596 eV Total energy + Delta-G solvation = -3663.861070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.12212 -41.55713 -40.57723 -38.82398 -36.80875 -34.84417 -34.05598 -32.58958 -32.05704 -29.64060 -27.85024 -26.44507 -25.64656 -24.31550 -23.43197 -21.29389 -20.28450 -18.82441 -18.66127 -18.42204 -17.79815 -17.07520 -16.95540 -16.78596 -16.32366 -16.24338 -16.05636 -15.72749 -15.07503 -14.97806 -14.51535 -14.33376 -14.22287 -14.08674 -13.71050 -13.37926 -13.28278 -13.21877 -13.02353 -12.79429 -12.61690 -12.58066 -12.24944 -12.09200 -12.04350 -11.67091 -10.93694 -10.72400 -10.62859 -10.30242 -9.97850 -9.45465 -8.21243 -6.34989 -0.71816 -0.24678 1.10825 1.38688 1.41037 1.52302 1.83177 2.19649 2.42396 2.60795 2.76853 2.97128 3.09296 3.45286 3.49501 3.83890 3.95365 3.97738 4.20678 4.25041 4.29174 4.48420 4.59518 4.68540 4.71549 4.81975 4.86302 4.95560 4.98081 5.00278 5.01328 5.11584 5.24283 5.27243 5.51068 5.56967 5.81328 6.06652 6.35821 6.65241 6.74776 7.24895 7.39927 8.85935 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.003818 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.414301 B = 7331.966309 C = 8255.475742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.171 4.171 3 C 0.398 3.602 4 O -0.477 6.477 5 C -0.226 4.226 6 C 0.012 3.988 7 C -0.159 4.159 8 C 0.540 3.460 9 O -0.585 6.585 10 N -0.600 5.600 11 C 0.059 3.941 12 C 0.259 3.741 13 C -0.541 4.541 14 H 0.053 0.947 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.964 3.036 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.270 1.270 21 C -0.036 4.036 22 C -0.157 4.157 23 C 0.159 3.841 24 F -0.125 7.125 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.153 0.847 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.002 0.998 36 H 0.267 0.733 37 H 0.191 0.809 38 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.886 13.620 0.087 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.208 4.208 3 C 0.277 3.723 4 O -0.354 6.354 5 C -0.228 4.228 6 C -0.007 4.007 7 C -0.163 4.163 8 C 0.329 3.671 9 O -0.467 6.467 10 N -0.330 5.330 11 C -0.082 4.082 12 C 0.138 3.862 13 C -0.580 4.580 14 H 0.071 0.929 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.789 3.211 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.196 1.196 21 C -0.053 4.053 22 C -0.176 4.176 23 C 0.139 3.861 24 F -0.103 7.103 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.171 0.829 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.020 0.980 36 H 0.076 0.924 37 H 0.207 0.793 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -12.333 13.464 -0.144 18.259 hybrid contribution 0.193 -0.823 0.523 0.994 sum -12.140 12.641 0.379 17.530 Atomic orbital electron populations 1.21586 0.93087 1.02946 1.02196 1.22090 0.98778 0.93361 1.06559 1.22752 0.86643 0.92689 0.70168 1.90553 1.58528 1.48720 1.37611 1.20611 0.96523 0.92550 1.13101 1.21443 0.90693 0.99477 0.89082 1.19951 0.93594 0.94063 1.08647 1.18670 0.82518 0.87815 0.78071 1.90736 1.78396 1.26778 1.50770 1.48037 1.09341 1.16559 1.59027 1.22642 1.02562 0.83813 0.99167 1.18844 0.86238 0.85270 0.95803 1.21718 1.20128 1.13435 1.02702 0.92922 1.25788 0.94878 0.98445 0.99779 1.70039 1.23471 1.29953 1.33232 0.85413 0.78291 0.78228 0.79147 1.19252 1.20849 1.19550 1.22713 1.03616 0.89450 0.89571 1.21437 0.89159 1.02758 1.04215 1.18495 0.88194 0.83258 0.96132 1.91566 1.69132 1.57063 1.92585 0.89908 0.92945 0.92934 0.86489 0.86495 0.82913 0.88897 0.88414 0.90994 0.94903 0.98010 0.92405 0.79260 0.79811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.20 71.98 0.66 -1.74 16 2 C -0.17 -3.06 5.02 29.85 0.15 -2.91 16 3 C 0.40 9.60 7.11 27.99 0.20 9.80 16 4 O -0.48 -14.20 14.96 -3.00 -0.04 -14.24 16 5 C -0.23 -5.44 5.87 -20.15 -0.12 -5.56 16 6 C 0.01 0.31 9.00 22.84 0.21 0.52 16 7 C -0.16 -4.43 5.55 -20.13 -0.11 -4.55 16 8 C 0.54 21.20 7.51 86.76 0.65 21.85 16 9 O -0.59 -28.72 16.17 -3.93 -0.06 -28.79 16 10 N -0.60 -23.40 2.86 -854.68 -2.44 -25.84 16 11 C 0.06 1.49 8.64 127.77 1.10 2.59 16 12 C 0.26 13.18 5.12 85.63 0.44 13.62 16 13 C -0.54 -30.00 9.39 25.60 0.24 -29.76 16 14 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 15 C 0.01 0.57 5.46 84.65 0.46 1.03 16 16 N -0.93 -54.26 13.29 21.45 0.28 -53.98 16 17 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 C -0.04 -0.69 7.61 22.58 0.17 -0.52 16 22 C -0.16 -2.66 9.99 22.23 0.22 -2.43 16 23 C 0.16 3.63 7.30 22.82 0.17 3.79 16 24 F -0.13 -3.22 15.53 44.97 0.70 -2.52 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 27 H 0.05 0.97 8.10 -2.38 -0.02 0.95 16 28 H 0.12 1.81 8.08 -2.39 -0.02 1.79 16 29 H 0.12 1.79 8.09 -2.38 -0.02 1.77 16 30 H 0.15 3.84 6.76 -2.91 -0.02 3.82 16 31 H 0.09 1.64 6.90 -2.39 -0.02 1.62 16 32 H 0.10 1.92 5.39 -2.39 -0.01 1.90 16 33 H 0.07 1.94 8.09 -2.39 -0.02 1.92 16 34 H 0.03 1.66 8.07 -2.39 -0.02 1.65 16 35 H 0.00 0.10 7.53 -2.39 -0.02 0.09 16 36 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.19 2.76 4.00 -2.91 -0.01 2.75 16 38 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -75.21 327.86 5.99 -69.22 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 1.09 Total: 4.73 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.44 Total: 5.73 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -2.16 Total: -79.82 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -0.11 Total: -43.03 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.70 Total: -2.52 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -75.21 5.99 -69.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756950421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.337 kcal (2) G-P(sol) polarization free energy of solvation -75.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds