Wall clock time and date at job start Tue Mar 31 2020 07:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.46924 * 2 1 4 4 O 1.21269 * 120.00337 * 0.02562 * 3 2 1 5 5 C 1.47020 * 119.99883 * 179.97438 * 3 2 1 6 6 C 1.39620 * 120.12297 * 0.02562 * 5 3 2 7 7 C 1.39202 * 119.70375 * 179.97438 * 6 5 3 8 8 C 1.47756 * 120.02577 * 180.02562 * 7 6 5 9 9 O 1.21563 * 119.99589 * 359.97398 * 8 7 6 10 10 N 1.34771 * 120.00170 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99910 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47629 * 325.00256 * 11 10 8 13 13 C 1.53008 * 109.47212 * 85.00179 * 11 10 8 14 14 C 1.50702 * 109.47376 * 204.99930 * 11 10 8 15 15 H 1.08000 * 119.99884 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00417 * 180.02562 * 14 11 10 17 17 N 1.31522 * 119.99545 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00272 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47283 * 59.99445 * 18 16 14 20 20 H 1.48499 * 109.47299 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47158 * 299.99623 * 18 16 14 22 22 C 1.39889 * 119.95482 * 359.97438 * 7 6 5 23 23 C 1.37870 * 120.25254 * 0.26033 * 22 7 6 24 24 C 1.38456 * 120.29751 * 359.48223 * 23 22 7 25 25 F 1.35099 * 119.97867 * 180.25640 * 24 23 22 26 26 H 1.09005 * 109.47080 * 300.00066 * 1 2 3 27 27 H 1.09001 * 109.46970 * 59.99817 * 1 2 3 28 28 H 1.08996 * 109.47176 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47067 * 240.00405 * 2 1 3 30 30 H 1.08993 * 109.47119 * 120.00458 * 2 1 3 31 31 H 1.07996 * 120.14999 * 359.97438 * 6 5 3 32 32 H 0.96997 * 120.00473 * 359.97438 * 10 8 7 33 33 H 1.08993 * 109.46866 * 180.02562 * 13 11 10 34 34 H 1.09005 * 109.46410 * 299.99782 * 13 11 10 35 35 H 1.08996 * 109.46761 * 59.99545 * 13 11 10 36 36 H 0.96999 * 119.99352 * 180.02562 * 17 16 14 37 37 H 1.08002 * 119.87037 * 179.97438 * 22 7 6 38 38 H 1.07998 * 119.85071 * 179.74250 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2443 2.3426 0.0005 5 6 3.4778 1.6895 0.0006 6 6 4.3874 0.6303 0.0006 7 6 5.7540 0.8947 0.0006 8 6 6.7229 -0.2209 0.0000 9 8 6.3265 -1.3701 0.0000 10 7 8.0460 0.0356 -0.0005 11 6 9.0066 -1.0705 -0.0005 12 1 8.6095 -1.8966 0.5892 13 6 9.2456 -1.5384 -1.4375 14 6 10.3085 -0.6053 0.5994 15 1 10.4100 0.4124 0.9463 16 6 11.3699 -1.4788 0.7053 17 7 11.2460 -2.7183 0.2832 18 14 12.9833 -0.9024 1.4495 19 1 12.7511 -0.4492 2.8444 20 1 13.9571 -2.0236 1.4494 21 1 13.5243 0.2237 0.6467 22 6 6.2096 2.2173 0.0000 23 6 5.3098 3.2619 0.0049 24 6 3.9482 3.0109 -0.0004 25 9 3.0722 4.0395 -0.0008 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.0322 -0.3896 0.0006 32 1 8.3623 0.9526 -0.0009 33 1 9.9599 -2.3616 -1.4374 34 1 8.3040 -1.8749 -1.8714 35 1 9.6427 -0.7123 -2.0273 36 1 11.9927 -3.3330 0.3580 37 1 7.2703 2.4209 0.0004 38 1 5.6687 4.2805 0.0087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756957072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:43 Heat of formation + Delta-G solvation = -104.147642 kcal Electronic energy + Delta-G solvation = -22647.629426 eV Core-core repulsion = 18983.352406 eV Total energy + Delta-G solvation = -3664.277019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.12584 -40.28218 -39.30137 -37.69859 -34.96630 -33.29867 -32.64051 -31.55314 -30.99896 -28.73377 -25.76473 -25.34411 -23.80678 -23.40338 -21.18372 -20.26431 -19.38630 -18.21003 -17.50126 -16.78638 -16.32853 -16.08481 -15.67523 -15.36504 -15.29428 -14.88173 -14.50663 -14.32427 -14.21532 -13.43915 -13.36077 -13.29574 -12.88062 -12.53595 -12.48295 -12.25331 -11.92780 -11.77570 -11.59608 -11.37900 -11.17468 -11.02393 -10.83666 -10.41346 -10.30787 -9.91710 -9.45389 -9.34719 -9.15283 -8.96856 -8.63425 -8.06108 -6.19764 -4.29871 0.23916 0.73215 2.04434 3.01257 3.20839 3.26737 3.27226 3.60030 3.80137 3.87272 3.91666 4.29042 4.35123 4.68955 4.77474 4.89871 4.90848 4.96122 5.03470 5.13006 5.37285 5.49954 5.60653 5.66018 5.70370 5.74321 5.86387 5.96585 6.03114 6.44156 6.73888 6.86620 7.04764 7.28065 7.29811 7.43948 7.59608 7.81199 8.05808 8.48829 8.66129 8.92057 9.37677 10.86171 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026378 B = 0.003305 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.250635 B = 8470.494591 C = 9250.736807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.171 4.171 3 C 0.397 3.603 4 O -0.445 6.445 5 C -0.219 4.219 6 C 0.008 3.992 7 C -0.144 4.144 8 C 0.543 3.457 9 O -0.547 6.547 10 N -0.699 5.699 11 C 0.264 3.736 12 H 0.052 0.948 13 C -0.148 4.148 14 C -0.538 4.538 15 H 0.061 0.939 16 C 0.068 3.932 17 N -0.882 5.882 18 Si 0.903 3.097 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 C -0.028 4.028 23 C -0.174 4.174 24 C 0.169 3.831 25 F -0.117 7.117 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.155 0.845 32 H 0.388 0.612 33 H 0.092 0.908 34 H 0.016 0.984 35 H 0.027 0.973 36 H 0.266 0.734 37 H 0.145 0.855 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.690 8.688 -1.251 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.208 4.208 3 C 0.275 3.725 4 O -0.319 6.319 5 C -0.221 4.221 6 C -0.011 4.011 7 C -0.147 4.147 8 C 0.328 3.672 9 O -0.427 6.427 10 N -0.346 5.346 11 C 0.163 3.837 12 H 0.069 0.931 13 C -0.207 4.207 14 C -0.576 4.576 15 H 0.079 0.921 16 C -0.136 4.136 17 N -0.519 5.519 18 Si 0.730 3.270 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.047 4.047 23 C -0.192 4.192 24 C 0.148 3.852 25 F -0.095 7.095 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.173 0.827 32 H 0.222 0.778 33 H 0.110 0.890 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.163 0.837 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.265 8.182 -1.266 16.494 hybrid contribution 1.167 0.937 0.368 1.541 sum -13.098 9.119 -0.898 15.985 Atomic orbital electron populations 1.21588 0.93456 1.01961 1.02989 1.22007 0.98453 0.95045 1.05320 1.22353 0.86872 0.91805 0.71515 1.90567 1.57979 1.47630 1.35773 1.20594 0.96512 0.92408 1.12543 1.21499 0.91037 0.99252 0.89282 1.20383 0.94555 0.94235 1.05564 1.18018 0.83098 0.87883 0.78174 1.90748 1.79158 1.21454 1.51316 1.46520 1.05209 1.11709 1.71204 1.18819 0.85847 0.84823 0.94204 0.93055 1.22091 0.99573 1.01814 0.97178 1.21155 0.96521 0.98079 1.41876 0.92067 1.24880 0.98911 0.94744 0.95055 1.69888 1.32143 1.04341 1.45575 0.86491 0.82565 0.78273 0.79685 1.20126 1.21079 1.20120 1.21531 1.00577 0.91009 0.91562 1.21087 0.90653 1.01342 1.06145 1.18119 0.87227 0.83583 0.96223 1.91582 1.68574 1.56826 1.92510 0.92144 0.92159 0.91807 0.87843 0.87822 0.82719 0.77825 0.88982 0.96524 0.95362 0.92405 0.83701 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.20 37.16 0.34 -0.87 16 2 C -0.17 -1.51 5.02 -27.88 -0.14 -1.65 16 3 C 0.40 4.75 7.11 -30.75 -0.22 4.54 16 4 O -0.44 -6.53 14.96 5.57 0.08 -6.45 16 5 C -0.22 -2.68 5.87 -105.06 -0.62 -3.30 16 6 C 0.01 0.11 9.01 -38.71 -0.35 -0.24 16 7 C -0.14 -2.02 5.87 -105.03 -0.62 -2.63 16 8 C 0.54 10.07 7.73 -12.37 -0.10 9.97 16 9 O -0.55 -12.06 15.99 5.31 0.08 -11.97 16 10 N -0.70 -13.48 5.02 -55.90 -0.28 -13.76 16 11 C 0.26 6.38 2.56 -69.08 -0.18 6.20 16 12 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 13 C -0.15 -3.51 9.26 37.16 0.34 -3.17 16 14 C -0.54 -13.60 8.73 -34.44 -0.30 -13.90 16 15 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -24.03 11.32 55.43 0.63 -23.41 16 18 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 22 C -0.03 -0.32 9.53 -39.10 -0.37 -0.69 16 23 C -0.17 -1.81 9.99 -39.64 -0.40 -2.21 16 24 C 0.17 2.09 7.30 -38.74 -0.28 1.80 16 25 F -0.12 -1.59 15.53 2.25 0.03 -1.56 16 26 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 27 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 31 H 0.16 1.81 6.62 -52.49 -0.35 1.46 16 32 H 0.39 6.26 6.55 -40.82 -0.27 5.99 16 33 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.15 1.36 6.38 -52.49 -0.33 1.02 16 38 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 330.27 15.07 4.98 4.98 Total: -1.00 -30.78 330.27 -7.04 -37.82 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.57 Total: 3.96 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.97 Total: -4.49 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.35 Total: -37.17 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.17 Total: -18.42 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.03 Total: -1.56 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.78 -7.04 -37.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756957072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.328 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds