Wall clock time and date at job start Tue Mar 31 2020 07:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.46924 * 2 1 4 4 O 1.21269 * 120.00337 * 0.02562 * 3 2 1 5 5 C 1.47020 * 119.99883 * 179.97438 * 3 2 1 6 6 C 1.39620 * 120.12297 * 0.02562 * 5 3 2 7 7 C 1.39202 * 119.70375 * 179.97438 * 6 5 3 8 8 C 1.47756 * 120.02577 * 180.02562 * 7 6 5 9 9 O 1.21563 * 119.99589 * 359.97398 * 8 7 6 10 10 N 1.34771 * 120.00170 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99910 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47629 * 325.00256 * 11 10 8 13 13 C 1.53008 * 109.47212 * 85.00179 * 11 10 8 14 14 C 1.50702 * 109.47376 * 204.99930 * 11 10 8 15 15 H 1.08000 * 119.99884 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00417 * 180.02562 * 14 11 10 17 17 N 1.31522 * 119.99545 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00272 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47283 * 59.99445 * 18 16 14 20 20 H 1.48499 * 109.47299 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47158 * 299.99623 * 18 16 14 22 22 C 1.39889 * 119.95482 * 359.97438 * 7 6 5 23 23 C 1.37870 * 120.25254 * 0.26033 * 22 7 6 24 24 C 1.38456 * 120.29751 * 359.48223 * 23 22 7 25 25 F 1.35099 * 119.97867 * 180.25640 * 24 23 22 26 26 H 1.09005 * 109.47080 * 300.00066 * 1 2 3 27 27 H 1.09001 * 109.46970 * 59.99817 * 1 2 3 28 28 H 1.08996 * 109.47176 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47067 * 240.00405 * 2 1 3 30 30 H 1.08993 * 109.47119 * 120.00458 * 2 1 3 31 31 H 1.07996 * 120.14999 * 359.97438 * 6 5 3 32 32 H 0.96997 * 120.00473 * 359.97438 * 10 8 7 33 33 H 1.08993 * 109.46866 * 180.02562 * 13 11 10 34 34 H 1.09005 * 109.46410 * 299.99782 * 13 11 10 35 35 H 1.08996 * 109.46761 * 59.99545 * 13 11 10 36 36 H 0.96999 * 119.99352 * 180.02562 * 17 16 14 37 37 H 1.08002 * 119.87037 * 179.97438 * 22 7 6 38 38 H 1.07998 * 119.85071 * 179.74250 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2443 2.3426 0.0005 5 6 3.4778 1.6895 0.0006 6 6 4.3874 0.6303 0.0006 7 6 5.7540 0.8947 0.0006 8 6 6.7229 -0.2209 0.0000 9 8 6.3265 -1.3701 0.0000 10 7 8.0460 0.0356 -0.0005 11 6 9.0066 -1.0705 -0.0005 12 1 8.6095 -1.8966 0.5892 13 6 9.2456 -1.5384 -1.4375 14 6 10.3085 -0.6053 0.5994 15 1 10.4100 0.4124 0.9463 16 6 11.3699 -1.4788 0.7053 17 7 11.2460 -2.7183 0.2832 18 14 12.9833 -0.9024 1.4495 19 1 12.7511 -0.4492 2.8444 20 1 13.9571 -2.0236 1.4494 21 1 13.5243 0.2237 0.6467 22 6 6.2096 2.2173 0.0000 23 6 5.3098 3.2619 0.0049 24 6 3.9482 3.0109 -0.0004 25 9 3.0722 4.0395 -0.0008 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.0322 -0.3896 0.0006 32 1 8.3623 0.9526 -0.0009 33 1 9.9599 -2.3616 -1.4374 34 1 8.3040 -1.8749 -1.8714 35 1 9.6427 -0.7123 -2.0273 36 1 11.9927 -3.3330 0.3580 37 1 7.2703 2.4209 0.0004 38 1 5.6687 4.2805 0.0087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756957072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:43 Heat of formation + Delta-G solvation = -122.448292 kcal Electronic energy + Delta-G solvation = -22648.423001 eV Core-core repulsion = 18983.352406 eV Total energy + Delta-G solvation = -3665.070595 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.14189 -41.39633 -40.52455 -38.89105 -36.74084 -34.48878 -34.02406 -32.59112 -32.16411 -30.40405 -27.31868 -26.62229 -25.06129 -24.32737 -22.66896 -21.55587 -20.68981 -19.38787 -18.71826 -17.98868 -17.65410 -17.06823 -17.05013 -16.88125 -16.24063 -16.12866 -15.84895 -15.81350 -15.11288 -14.95823 -14.49263 -14.24258 -14.21523 -14.01025 -13.71733 -13.25815 -13.20558 -12.97897 -12.82758 -12.70654 -12.66632 -12.55188 -12.24041 -12.14544 -12.07225 -11.10022 -10.99660 -10.77267 -10.57074 -10.37333 -10.08173 -9.71872 -8.15748 -6.33077 -0.74021 -0.26349 1.09544 1.48294 1.49510 1.57192 1.85351 2.29690 2.51846 2.65087 2.75716 2.95516 3.15444 3.45900 3.70038 3.84953 3.95427 3.97349 4.22623 4.26507 4.45458 4.67256 4.71364 4.78452 4.84987 4.88252 4.96150 4.99368 5.01874 5.06472 5.11631 5.28830 5.44789 5.49341 5.59800 5.70508 5.90752 6.11310 6.36525 6.73720 6.89274 7.31874 7.47853 8.90295 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026378 B = 0.003305 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.250635 B = 8470.494591 C = 9250.736807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.170 4.170 3 C 0.397 3.603 4 O -0.477 6.477 5 C -0.224 4.224 6 C 0.016 3.984 7 C -0.160 4.160 8 C 0.544 3.456 9 O -0.589 6.589 10 N -0.696 5.696 11 C 0.271 3.729 12 H 0.004 0.996 13 C -0.136 4.136 14 C -0.548 4.548 15 H 0.077 0.923 16 C 0.016 3.984 17 N -0.917 5.917 18 Si 0.970 3.030 19 H -0.271 1.271 20 H -0.289 1.289 21 H -0.263 1.263 22 C -0.015 4.015 23 C -0.158 4.158 24 C 0.160 3.840 25 F -0.125 7.125 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.160 0.840 32 H 0.406 0.594 33 H 0.067 0.933 34 H 0.014 0.986 35 H 0.042 0.958 36 H 0.265 0.735 37 H 0.169 0.831 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.217 10.614 -1.061 16.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.207 4.207 3 C 0.277 3.723 4 O -0.355 6.355 5 C -0.226 4.226 6 C -0.003 4.003 7 C -0.163 4.163 8 C 0.332 3.668 9 O -0.472 6.472 10 N -0.344 5.344 11 C 0.168 3.832 12 H 0.022 0.978 13 C -0.195 4.195 14 C -0.586 4.586 15 H 0.095 0.905 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.795 3.205 19 H -0.196 1.196 20 H -0.215 1.215 21 H -0.188 1.188 22 C -0.033 4.033 23 C -0.176 4.176 24 C 0.140 3.860 25 F -0.103 7.103 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.177 0.823 32 H 0.242 0.758 33 H 0.085 0.915 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.186 0.814 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -13.800 10.152 -1.078 17.166 hybrid contribution 0.948 0.354 0.305 1.057 sum -12.852 10.505 -0.773 16.617 Atomic orbital electron populations 1.21593 0.93193 1.02967 1.02142 1.22092 0.98684 0.93185 1.06717 1.22787 0.86554 0.92794 0.70161 1.90558 1.58538 1.48792 1.37563 1.20652 0.96695 0.92446 1.12838 1.21487 0.90566 0.99651 0.88634 1.20007 0.93845 0.93807 1.08632 1.18575 0.83173 0.88504 0.76550 1.90723 1.79763 1.23678 1.53003 1.46200 1.05091 1.11462 1.71685 1.18394 0.86414 0.84991 0.93429 0.97846 1.21920 0.98811 1.01376 0.97360 1.21528 0.96776 0.98761 1.41579 0.90526 1.25763 1.02438 0.94757 0.95460 1.70043 1.33059 1.05572 1.46835 0.85426 0.78235 0.77839 0.79019 1.19586 1.21485 1.18803 1.21724 1.01921 0.89737 0.89939 1.21351 0.89385 1.02658 1.04224 1.18457 0.88026 0.83416 0.96118 1.91567 1.69065 1.57124 1.92572 0.93033 0.93006 0.89830 0.86266 0.86316 0.82262 0.75756 0.91467 0.96647 0.93938 0.92560 0.81411 0.80210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.20 71.98 0.66 -1.60 16 2 C -0.17 -2.78 5.02 29.85 0.15 -2.63 16 3 C 0.40 9.17 7.11 27.99 0.20 9.37 16 4 O -0.48 -13.88 14.96 -3.00 -0.04 -13.92 16 5 C -0.22 -5.19 5.87 -20.15 -0.12 -5.30 16 6 C 0.02 0.38 9.01 22.84 0.21 0.58 16 7 C -0.16 -4.22 5.87 -20.13 -0.12 -4.33 16 8 C 0.54 19.94 7.73 86.76 0.67 20.61 16 9 O -0.59 -26.47 15.99 -3.91 -0.06 -26.53 16 10 N -0.70 -26.26 5.02 -449.06 -2.25 -28.52 16 11 C 0.27 13.21 2.56 44.25 0.11 13.33 16 12 H 0.00 0.21 7.58 -2.39 -0.02 0.19 16 13 C -0.14 -6.52 9.26 71.98 0.67 -5.85 16 14 C -0.55 -27.38 8.73 25.60 0.22 -27.15 16 15 H 0.08 3.50 7.74 -2.91 -0.02 3.48 16 16 C 0.02 0.83 5.30 84.65 0.45 1.28 16 17 N -0.92 -50.78 11.32 21.45 0.24 -50.54 16 18 Si 0.97 40.17 29.54 68.60 2.03 42.19 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 20 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 22 C -0.01 -0.28 9.53 22.58 0.22 -0.07 16 23 C -0.16 -2.76 9.99 22.23 0.22 -2.53 16 24 C 0.16 3.62 7.30 22.81 0.17 3.79 16 25 F -0.13 -3.22 15.53 44.97 0.70 -2.52 16 26 H 0.05 0.90 8.10 -2.38 -0.02 0.89 16 27 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.12 1.61 8.08 -2.39 -0.02 1.59 16 30 H 0.12 1.62 8.08 -2.39 -0.02 1.60 16 31 H 0.16 3.60 6.62 -2.91 -0.02 3.58 16 32 H 0.41 12.20 6.55 -92.71 -0.61 11.59 16 33 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 34 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 37 H 0.17 2.47 6.38 -2.91 -0.02 2.45 16 38 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -67.90 330.27 4.80 -63.10 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.49 Total: 17.28 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 3.71 Total: -0.53 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -2.01 Total: -79.06 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.11 Total: -40.46 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.70 Total: -2.52 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.19 kcal Total: -67.90 4.80 -63.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756957072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.349 kcal (2) G-P(sol) polarization free energy of solvation -67.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds