Wall clock time and date at job start Tue Mar 31 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47217 * 2 1 4 4 H 1.08997 * 109.47157 * 54.50172 * 3 2 1 5 5 S 1.81403 * 109.46773 * 174.49955 * 3 2 1 6 6 C 1.81397 * 103.00047 * 292.51938 * 5 3 2 7 7 C 1.50706 * 109.47079 * 185.16098 * 6 5 3 8 8 O 1.21283 * 119.99771 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99914 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46772 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99980 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99615 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99806 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47227 * 59.99898 * 15 13 11 17 17 H 1.48499 * 109.47038 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46746 * 300.00025 * 15 13 11 19 19 C 1.50699 * 109.47101 * 294.49870 * 3 2 1 20 20 C 1.38243 * 119.99778 * 299.72876 * 19 3 2 21 21 C 1.38237 * 119.99394 * 179.78821 * 20 19 3 22 22 C 1.38238 * 120.00354 * 0.44256 * 21 20 19 23 23 C 1.38231 * 119.99829 * 359.81188 * 22 21 20 24 24 C 1.38230 * 120.00005 * 120.00373 * 19 3 2 25 25 H 1.09004 * 109.47570 * 185.57770 * 1 2 3 26 26 H 1.09004 * 109.47139 * 65.57389 * 1 2 3 27 27 H 1.09005 * 109.47438 * 305.57906 * 1 2 3 28 28 H 1.08996 * 109.47008 * 120.00151 * 2 1 3 29 29 H 1.09003 * 109.47094 * 239.99786 * 2 1 3 30 30 H 1.09003 * 109.46834 * 305.15788 * 6 5 3 31 31 H 1.08995 * 109.47356 * 65.16168 * 6 5 3 32 32 H 0.97006 * 119.99817 * 359.97438 * 9 7 6 33 33 H 1.09003 * 109.46883 * 299.99254 * 10 9 7 34 34 H 1.08995 * 109.47299 * 59.99628 * 10 9 7 35 35 H 0.97004 * 119.99721 * 180.02562 * 14 13 11 36 36 H 1.07993 * 120.00101 * 359.97438 * 20 19 3 37 37 H 1.07999 * 119.99595 * 180.26989 * 21 20 19 38 38 H 1.07993 * 119.99894 * 179.83574 * 22 21 20 39 39 H 1.07997 * 120.00384 * 180.02562 * 23 22 21 40 40 H 1.08005 * 119.99993 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5985 1.9839 0.8366 5 16 3.8466 1.4450 0.1639 6 6 4.1044 0.8211 1.8476 7 6 5.5715 0.8823 2.1868 8 8 6.3650 1.3047 1.3727 9 7 6.0018 0.4666 3.3946 10 6 7.4279 0.5266 3.7245 11 6 7.6421 0.0082 5.1232 12 1 6.8002 -0.3323 5.7077 13 6 8.9130 -0.0324 5.6563 14 7 9.9384 0.3809 4.9439 15 14 9.1787 -0.6756 7.3898 16 1 8.7096 -2.0821 7.4732 17 1 10.6242 -0.6147 7.7243 18 1 8.4132 0.1592 8.3502 19 6 1.6519 2.1125 -1.2929 20 6 2.1020 1.6040 -2.4971 21 6 1.7424 2.2161 -3.6832 22 6 0.9404 3.3419 -3.6648 23 6 0.4948 3.8533 -2.4604 24 6 0.8507 3.2387 -1.2744 25 1 -0.3634 -1.0228 0.0999 26 1 -0.3634 0.4250 -0.9357 27 1 -0.3634 0.5979 0.8358 28 1 1.8932 -0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 3.5427 1.4344 2.5523 31 1 3.7600 -0.2112 1.9094 32 1 5.3672 0.1284 4.0456 33 1 7.9900 -0.0860 3.0195 34 1 7.7719 1.5590 3.6633 35 1 10.8326 0.3520 5.3188 36 1 2.7319 0.7269 -2.5112 37 1 2.0904 1.8163 -4.6242 38 1 0.6617 3.8215 -4.5914 39 1 -0.1321 4.7326 -2.4459 40 1 0.5025 3.6383 -0.3333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757748382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:27 Heat of formation + Delta-G solvation = -30.536530 kcal Electronic energy + Delta-G solvation = -19938.503781 eV Core-core repulsion = 16843.631955 eV Total energy + Delta-G solvation = -3094.871826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.60648 -38.73622 -35.50030 -34.23694 -32.40146 -31.13128 -30.97299 -29.94694 -27.08801 -26.65722 -23.19061 -22.70838 -22.41735 -20.76373 -19.86178 -17.56737 -16.94824 -16.28155 -15.80402 -15.77171 -15.16959 -15.12461 -14.98369 -14.54829 -14.39889 -13.93233 -13.59462 -13.25357 -13.10320 -12.81886 -12.74059 -12.64106 -11.99398 -11.92701 -11.78206 -11.60453 -11.39723 -11.11028 -11.01622 -10.90510 -10.87931 -10.33770 -9.81034 -9.44462 -9.21503 -9.08931 -8.83773 -8.76665 -7.96512 -7.53627 -6.18634 -4.26206 0.94129 1.22638 1.75446 2.58323 3.23578 3.24744 3.28625 3.30122 3.64087 4.02275 4.32318 4.34647 4.50593 4.75899 4.81920 4.90173 4.96288 5.06622 5.15344 5.17969 5.21953 5.25191 5.32329 5.40639 5.47395 5.52550 5.68781 5.79001 5.85809 5.86960 5.99926 6.26719 6.33293 6.40439 6.79805 7.25493 7.35452 7.48263 7.61408 7.93706 8.53605 8.72693 9.00706 9.40157 10.91481 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034730 B = 0.002619 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.029993 B =10688.760424 C =11109.174289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.040 4.040 4 H 0.092 0.908 5 S -0.165 6.165 6 C -0.131 4.131 7 C 0.513 3.487 8 O -0.535 6.535 9 N -0.708 5.708 10 C 0.251 3.749 11 C -0.545 4.545 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.905 3.095 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.056 4.056 20 C -0.101 4.101 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.107 4.107 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.391 0.609 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.267 0.733 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.630 1.963 -12.519 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.169 4.169 4 H 0.110 0.890 5 S 0.066 5.934 6 C -0.282 4.282 7 C 0.296 3.704 8 O -0.413 6.413 9 N -0.357 5.357 10 C 0.130 3.870 11 C -0.584 4.584 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.732 3.268 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.201 1.201 19 C -0.057 4.057 20 C -0.120 4.120 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.126 4.126 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.224 0.776 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.968 2.597 -13.775 25.222 hybrid contribution -0.978 -0.845 2.307 2.644 sum -21.946 1.752 -11.469 24.824 Atomic orbital electron populations 1.21799 0.95194 1.01718 1.02055 1.21889 0.96322 0.93910 1.03294 1.22353 0.96916 0.99193 0.98421 0.88984 1.87714 1.02712 1.86485 1.16496 1.23651 1.00074 1.05526 0.98958 1.19545 0.88137 0.79390 0.83330 1.90712 1.55856 1.46413 1.48310 1.46392 1.12371 1.62887 1.14016 1.19144 0.74228 0.97853 0.95746 1.21170 0.93654 1.44577 0.98966 0.91925 1.24957 0.95675 0.95031 0.98328 1.69968 0.99417 1.45612 1.37178 0.86460 0.77301 0.79378 0.83686 1.20046 1.21023 1.20055 1.19176 0.97717 0.95782 0.93022 1.21086 0.98916 1.00301 0.91730 1.21146 0.98291 0.96179 0.98071 1.21161 0.98268 0.96585 0.97962 1.21095 1.00416 0.99926 0.92443 1.21014 0.98205 0.95009 0.98407 0.92480 0.92410 0.92763 0.91461 0.90488 0.87837 0.87740 0.77626 0.95376 0.95386 0.92321 0.85482 0.85969 0.86199 0.86064 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.64 37.15 0.36 -0.78 16 2 C -0.11 -1.04 5.27 -26.73 -0.14 -1.18 16 3 C -0.04 -0.42 2.46 -27.88 -0.07 -0.49 16 4 H 0.09 0.89 7.88 -51.93 -0.41 0.48 16 5 S -0.17 -2.45 19.87 -107.50 -2.14 -4.58 16 6 C -0.13 -1.87 6.09 36.01 0.22 -1.65 16 7 C 0.51 10.35 7.85 -10.98 -0.09 10.27 16 8 O -0.53 -13.23 15.86 5.55 0.09 -13.15 16 9 N -0.71 -14.80 5.55 -61.47 -0.34 -15.14 16 10 C 0.25 6.66 5.43 -5.19 -0.03 6.63 16 11 C -0.55 -14.73 9.28 -34.44 -0.32 -15.05 16 12 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 14 N -0.88 -26.10 13.29 55.43 0.74 -25.36 16 15 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 C -0.06 -0.58 3.89 -104.62 -0.41 -0.99 16 20 C -0.10 -1.06 8.71 -39.58 -0.34 -1.41 16 21 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 22 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 23 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.11 -1.01 9.67 -39.58 -0.38 -1.40 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 7.58 -51.93 -0.39 0.07 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.59 7.00 -51.93 -0.36 0.23 16 29 H 0.08 0.72 7.23 -51.93 -0.38 0.34 16 30 H 0.10 1.24 8.14 -51.92 -0.42 0.81 16 31 H 0.10 1.24 7.32 -51.93 -0.38 0.86 16 32 H 0.39 6.86 8.32 -40.82 -0.34 6.52 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.13 1.33 7.56 -52.49 -0.40 0.93 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.12 0.97 7.95 -52.48 -0.42 0.55 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -32.79 350.94 -9.87 -42.65 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.99 Total: 3.29 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.49 Total: -8.74 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.40 Total: -40.50 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.14 Total: -4.58 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.79 -9.87 -42.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757748382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.118 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds