Wall clock time and date at job start Tue Mar 31 2020 06:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47217 * 2 1 4 4 H 1.08997 * 109.47157 * 54.50172 * 3 2 1 5 5 S 1.81403 * 109.46773 * 174.49955 * 3 2 1 6 6 C 1.81397 * 103.00047 * 292.51938 * 5 3 2 7 7 C 1.50706 * 109.47079 * 185.16098 * 6 5 3 8 8 O 1.21283 * 119.99771 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99914 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46772 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99980 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99615 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99806 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47227 * 59.99898 * 15 13 11 17 17 H 1.48499 * 109.47038 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46746 * 300.00025 * 15 13 11 19 19 C 1.50699 * 109.47101 * 294.49870 * 3 2 1 20 20 C 1.38243 * 119.99778 * 299.72876 * 19 3 2 21 21 C 1.38237 * 119.99394 * 179.78821 * 20 19 3 22 22 C 1.38238 * 120.00354 * 0.44256 * 21 20 19 23 23 C 1.38231 * 119.99829 * 359.81188 * 22 21 20 24 24 C 1.38230 * 120.00005 * 120.00373 * 19 3 2 25 25 H 1.09004 * 109.47570 * 185.57770 * 1 2 3 26 26 H 1.09004 * 109.47139 * 65.57389 * 1 2 3 27 27 H 1.09005 * 109.47438 * 305.57906 * 1 2 3 28 28 H 1.08996 * 109.47008 * 120.00151 * 2 1 3 29 29 H 1.09003 * 109.47094 * 239.99786 * 2 1 3 30 30 H 1.09003 * 109.46834 * 305.15788 * 6 5 3 31 31 H 1.08995 * 109.47356 * 65.16168 * 6 5 3 32 32 H 0.97006 * 119.99817 * 359.97438 * 9 7 6 33 33 H 1.09003 * 109.46883 * 299.99254 * 10 9 7 34 34 H 1.08995 * 109.47299 * 59.99628 * 10 9 7 35 35 H 0.97004 * 119.99721 * 180.02562 * 14 13 11 36 36 H 1.07993 * 120.00101 * 359.97438 * 20 19 3 37 37 H 1.07999 * 119.99595 * 180.26989 * 21 20 19 38 38 H 1.07993 * 119.99894 * 179.83574 * 22 21 20 39 39 H 1.07997 * 120.00384 * 180.02562 * 23 22 21 40 40 H 1.08005 * 119.99993 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5985 1.9839 0.8366 5 16 3.8466 1.4450 0.1639 6 6 4.1044 0.8211 1.8476 7 6 5.5715 0.8823 2.1868 8 8 6.3650 1.3047 1.3727 9 7 6.0018 0.4666 3.3946 10 6 7.4279 0.5266 3.7245 11 6 7.6421 0.0082 5.1232 12 1 6.8002 -0.3323 5.7077 13 6 8.9130 -0.0324 5.6563 14 7 9.9384 0.3809 4.9439 15 14 9.1787 -0.6756 7.3898 16 1 8.7096 -2.0821 7.4732 17 1 10.6242 -0.6147 7.7243 18 1 8.4132 0.1592 8.3502 19 6 1.6519 2.1125 -1.2929 20 6 2.1020 1.6040 -2.4971 21 6 1.7424 2.2161 -3.6832 22 6 0.9404 3.3419 -3.6648 23 6 0.4948 3.8533 -2.4604 24 6 0.8507 3.2387 -1.2744 25 1 -0.3634 -1.0228 0.0999 26 1 -0.3634 0.4250 -0.9357 27 1 -0.3634 0.5979 0.8358 28 1 1.8932 -0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 3.5427 1.4344 2.5523 31 1 3.7600 -0.2112 1.9094 32 1 5.3672 0.1284 4.0456 33 1 7.9900 -0.0860 3.0195 34 1 7.7719 1.5590 3.6633 35 1 10.8326 0.3520 5.3188 36 1 2.7319 0.7269 -2.5112 37 1 2.0904 1.8163 -4.6242 38 1 0.6617 3.8215 -4.5914 39 1 -0.1321 4.7326 -2.4459 40 1 0.5025 3.6383 -0.3333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757748382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:26 Heat of formation + Delta-G solvation = -50.251293 kcal Electronic energy + Delta-G solvation = -19939.358677 eV Core-core repulsion = 16843.631955 eV Total energy + Delta-G solvation = -3095.726722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50057 -40.28146 -36.25336 -36.15767 -34.41000 -31.82890 -31.76393 -31.31113 -28.78866 -27.62382 -24.68429 -23.87839 -23.18535 -21.72516 -21.38281 -19.14855 -18.03335 -17.54349 -17.42757 -16.92349 -16.64806 -16.46328 -15.94411 -15.70207 -15.31696 -15.05654 -14.66705 -14.59629 -14.24171 -14.02986 -13.83341 -13.66251 -13.48164 -13.31206 -13.00537 -12.69347 -12.67183 -12.44773 -12.24526 -12.05178 -11.79809 -11.62547 -11.52477 -10.96227 -10.81178 -10.78812 -9.91239 -9.79436 -9.58122 -8.68870 -8.30214 -6.47464 0.08697 0.51957 0.80814 1.42907 1.47040 1.55358 1.58886 1.63592 2.30679 2.53998 2.93628 3.04667 3.57016 3.77514 3.86815 4.05185 4.07565 4.18320 4.20825 4.26151 4.32158 4.43806 4.54204 4.65851 4.73371 4.87665 5.03530 5.07860 5.14836 5.17687 5.20752 5.21506 5.38745 5.43675 5.58424 5.63637 5.64544 5.67517 5.81794 6.11947 6.62425 6.79813 7.20920 7.40235 8.81861 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034730 B = 0.002619 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.029993 B =10688.760424 C =11109.174289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.015 4.015 4 H 0.106 0.894 5 S -0.238 6.238 6 C -0.108 4.108 7 C 0.509 3.491 8 O -0.587 6.587 9 N -0.700 5.700 10 C 0.267 3.733 11 C -0.557 4.557 12 H 0.086 0.914 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.986 3.014 16 H -0.261 1.261 17 H -0.286 1.286 18 H -0.261 1.261 19 C -0.072 4.072 20 C -0.118 4.118 21 C -0.130 4.130 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.114 4.114 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.411 0.589 33 H -0.012 1.012 34 H -0.012 1.012 35 H 0.269 0.731 36 H 0.118 0.882 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.617 1.626 -11.199 28.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.143 4.143 4 H 0.124 0.876 5 S -0.007 6.007 6 C -0.258 4.258 7 C 0.294 3.706 8 O -0.468 6.468 9 N -0.351 5.351 10 C 0.144 3.856 11 C -0.595 4.595 12 H 0.104 0.896 13 C -0.197 4.197 14 N -0.570 5.570 15 Si 0.809 3.191 16 H -0.185 1.185 17 H -0.212 1.212 18 H -0.186 1.186 19 C -0.073 4.073 20 C -0.138 4.138 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.142 4.142 24 C -0.134 4.134 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.247 0.753 33 H 0.006 0.994 34 H 0.005 0.995 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.153 0.847 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -24.015 2.244 -12.444 27.140 hybrid contribution -0.107 -0.678 1.745 1.875 sum -24.122 1.566 -10.699 26.435 Atomic orbital electron populations 1.21743 0.93770 1.02458 1.02152 1.21882 0.97362 0.92797 1.03208 1.22350 0.92481 1.00472 0.99036 0.87566 1.88032 1.08269 1.86924 1.17449 1.23458 0.95220 1.08140 0.99019 1.20509 0.90575 0.77449 0.82020 1.90692 1.58099 1.48258 1.49721 1.46081 1.10482 1.63337 1.15210 1.18566 0.77075 0.94561 0.95352 1.21582 0.94651 1.44238 0.98996 0.89564 1.26097 0.95279 0.94981 1.03327 1.70140 1.00089 1.47099 1.39681 0.85187 0.77117 0.79292 0.77502 1.18547 1.21191 1.18559 1.19275 0.98580 0.96596 0.92849 1.21163 0.99441 1.00567 0.92585 1.21397 0.98490 0.96595 0.98266 1.21498 0.97483 0.96124 0.99112 1.21440 1.00254 1.00440 0.92112 1.21266 0.98009 0.94555 0.99575 0.91583 0.92942 0.91848 0.90877 0.91322 0.84573 0.84556 0.75255 0.99435 0.99453 0.92217 0.86434 0.84662 0.83927 0.83737 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.64 71.98 0.69 -1.13 16 2 C -0.11 -1.84 5.27 30.59 0.16 -1.68 16 3 C -0.02 -0.30 2.46 29.85 0.07 -0.23 16 4 H 0.11 1.76 7.88 -2.39 -0.02 1.74 16 5 S -0.24 -7.01 19.87 -56.49 -1.12 -8.13 16 6 C -0.11 -2.90 6.09 71.24 0.43 -2.47 16 7 C 0.51 20.70 7.85 87.66 0.69 21.39 16 8 O -0.59 -30.34 15.86 -3.04 -0.05 -30.39 16 9 N -0.70 -29.40 5.55 -466.78 -2.59 -31.99 16 10 C 0.27 14.77 5.43 85.63 0.46 15.23 16 11 C -0.56 -30.15 9.28 25.60 0.24 -29.91 16 12 H 0.09 4.16 7.60 -2.91 -0.02 4.13 16 13 C 0.00 0.16 5.46 84.66 0.46 0.62 16 14 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 15 Si 0.99 42.08 29.54 68.60 2.03 44.11 16 16 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 17 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 19 C -0.07 -1.43 3.89 -19.87 -0.08 -1.51 16 20 C -0.12 -2.47 8.71 22.27 0.19 -2.28 16 21 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 22 C -0.12 -1.89 10.05 22.27 0.22 -1.66 16 23 C -0.12 -1.87 10.05 22.27 0.22 -1.65 16 24 C -0.11 -1.96 9.67 22.27 0.22 -1.75 16 25 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.05 0.74 7.58 -2.38 -0.02 0.72 16 27 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.07 1.10 7.00 -2.39 -0.02 1.08 16 29 H 0.07 1.23 7.23 -2.39 -0.02 1.22 16 30 H 0.14 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.14 2.83 7.32 -2.39 -0.02 2.81 16 32 H 0.41 13.75 8.32 -92.70 -0.77 12.98 16 33 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 34 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.12 2.58 7.56 -2.91 -0.02 2.55 16 37 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 40 H 0.14 1.83 7.95 -2.91 -0.02 1.81 16 Total: -1.00 -74.96 350.94 3.02 -71.93 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.26 Total: 19.83 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 4.22 Total: -9.10 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -2.30 Total: -88.25 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.05 Total: -30.39 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: -7.01 SS G_CDS: -1.12 Total: -8.13 kcal Total: -74.96 3.02 -71.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757748382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.683 kcal (2) G-P(sol) polarization free energy of solvation -74.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds