Wall clock time and date at job start Tue Mar 31 2020 06:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47285 * 2 1 4 4 H 1.08999 * 109.47215 * 54.37886 * 3 2 1 5 5 S 1.81398 * 109.46573 * 294.37857 * 3 2 1 6 6 C 1.81408 * 103.00014 * 173.33208 * 5 3 2 7 7 C 1.50695 * 109.47395 * 175.12146 * 6 5 3 8 8 O 1.21281 * 119.99955 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00023 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99906 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47081 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99889 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00174 * 179.97438 * 11 10 9 14 14 N 1.31508 * 119.99882 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00079 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47022 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47266 * 119.99849 * 15 13 11 18 18 H 1.48497 * 109.46748 * 239.99835 * 15 13 11 19 19 C 1.50701 * 109.47149 * 174.38246 * 3 2 1 20 20 C 1.38226 * 120.00045 * 59.72409 * 19 3 2 21 21 C 1.38239 * 119.99795 * 179.79111 * 20 19 3 22 22 C 1.38229 * 119.99933 * 0.43612 * 21 20 19 23 23 C 1.38238 * 120.00431 * 359.81622 * 22 21 20 24 24 C 1.38240 * 119.99414 * 239.99698 * 19 3 2 25 25 H 1.08997 * 109.47216 * 55.32918 * 1 2 3 26 26 H 1.08999 * 109.47246 * 175.33287 * 1 2 3 27 27 H 1.09004 * 109.47185 * 295.33235 * 1 2 3 28 28 H 1.08997 * 109.47227 * 239.99035 * 2 1 3 29 29 H 1.09000 * 109.47080 * 119.99434 * 2 1 3 30 30 H 1.08999 * 109.46999 * 55.11672 * 6 5 3 31 31 H 1.09008 * 109.46904 * 295.11897 * 6 5 3 32 32 H 0.97003 * 119.99819 * 0.02562 * 9 7 6 33 33 H 1.08999 * 109.47243 * 299.99796 * 10 9 7 34 34 H 1.08999 * 109.47361 * 60.00089 * 10 9 7 35 35 H 0.97000 * 120.00122 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.00762 * 359.97438 * 20 19 3 37 37 H 1.08000 * 120.00037 * 180.27466 * 21 20 19 38 38 H 1.08010 * 120.00157 * 179.83601 * 22 21 20 39 39 H 1.07997 * 120.00501 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00365 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9846 0.8354 5 16 1.5760 2.2477 -1.5578 6 6 2.0748 3.9713 -1.2907 7 6 1.8607 4.7584 -2.5577 8 8 1.4159 4.2106 -3.5441 9 7 2.1635 6.0712 -2.5948 10 6 1.9559 6.8363 -3.8268 11 6 2.3702 8.2681 -3.6048 12 1 2.7505 8.5772 -2.6424 13 6 2.2647 9.1833 -4.6306 14 7 1.8030 8.8066 -5.8029 15 14 2.7789 10.9580 -4.3556 16 1 3.2608 11.1232 -2.9607 17 1 3.8685 11.3099 -5.3012 18 1 1.6156 11.8517 -4.5861 19 6 3.5406 1.4447 0.1391 20 6 4.3233 0.8088 -0.8063 21 6 5.7000 0.8146 -0.6810 22 6 6.2934 1.4486 0.3945 23 6 5.5104 2.0801 1.3428 24 6 4.1339 2.0779 1.2152 25 1 -0.3633 0.5846 -0.8452 26 1 -0.3634 -1.0242 -0.0836 27 1 -0.3634 0.4397 0.9289 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.1288 4.0059 -1.0151 31 1 1.4753 4.4030 -0.4891 32 1 2.5197 6.5093 -1.8060 33 1 2.5561 6.4049 -4.6279 34 1 0.9021 6.8013 -4.1031 35 1 1.7284 9.4506 -6.5245 36 1 3.8595 0.3100 -1.6444 37 1 6.3117 0.3216 -1.4219 38 1 7.3689 1.4508 0.4939 39 1 5.9741 2.5750 2.1832 40 1 3.5222 2.5713 1.9559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757748383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:31 Heat of formation + Delta-G solvation = -50.166208 kcal Electronic energy + Delta-G solvation = -20260.414810 eV Core-core repulsion = 17164.691778 eV Total energy + Delta-G solvation = -3095.723033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49058 -40.24113 -36.24044 -36.07654 -34.41744 -32.18448 -31.73197 -31.34286 -28.76444 -27.39012 -24.70215 -23.71870 -22.95980 -22.00244 -21.48212 -19.05961 -17.90818 -17.59460 -17.49965 -17.04844 -16.66170 -16.34311 -16.20123 -15.65000 -15.32840 -14.84738 -14.71300 -14.54120 -14.24769 -14.12427 -13.99363 -13.66858 -13.32458 -13.23212 -12.85153 -12.77219 -12.75557 -12.25547 -12.22441 -12.00450 -11.88545 -11.81471 -11.47728 -10.97440 -10.84036 -10.77832 -9.92230 -9.80076 -9.59711 -8.59861 -8.30805 -6.47835 0.22266 0.53234 0.63592 1.42849 1.44034 1.57549 1.62028 1.62859 2.30329 2.53235 2.94215 3.04329 3.56233 3.78500 3.84583 4.05526 4.06822 4.20517 4.22350 4.24462 4.31527 4.45592 4.56436 4.68387 4.74755 4.87799 5.06126 5.07085 5.12987 5.18548 5.20121 5.21212 5.43238 5.45223 5.58987 5.62672 5.66114 5.68726 5.81378 6.12687 6.62119 6.78317 7.20261 7.38340 8.81747 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018120 B = 0.003369 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.902891 B = 8308.639463 C = 9271.221529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.093 4.093 3 C -0.017 4.017 4 H 0.109 0.891 5 S -0.219 6.219 6 C -0.107 4.107 7 C 0.510 3.490 8 O -0.585 6.585 9 N -0.701 5.701 10 C 0.267 3.733 11 C -0.556 4.556 12 H 0.085 0.915 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.986 3.014 16 H -0.252 1.252 17 H -0.279 1.279 18 H -0.278 1.278 19 C -0.095 4.095 20 C -0.112 4.112 21 C -0.132 4.132 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.119 4.119 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.410 0.590 33 H -0.012 1.012 34 H -0.011 1.011 35 H 0.269 0.731 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.002 -16.016 20.000 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.132 4.132 3 C -0.145 4.145 4 H 0.127 0.873 5 S 0.011 5.989 6 C -0.258 4.258 7 C 0.296 3.704 8 O -0.466 6.466 9 N -0.351 5.351 10 C 0.144 3.856 11 C -0.594 4.594 12 H 0.103 0.897 13 C -0.196 4.196 14 N -0.570 5.570 15 Si 0.809 3.191 16 H -0.175 1.175 17 H -0.205 1.205 18 H -0.204 1.204 19 C -0.097 4.097 20 C -0.131 4.131 21 C -0.150 4.150 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.139 4.139 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.140 0.860 31 H 0.154 0.846 32 H 0.246 0.754 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.107 -16.754 18.194 25.255 hybrid contribution 0.757 1.590 0.580 1.854 sum 5.864 -15.164 18.774 24.835 Atomic orbital electron populations 1.21857 0.94550 1.02433 1.02504 1.21336 0.96759 0.91759 1.03299 1.22399 0.94149 1.00650 0.97347 0.87259 1.87681 1.81284 1.04835 1.25059 1.23387 1.07585 0.96057 0.98788 1.20461 0.77690 0.82718 0.89550 1.90682 1.47118 1.70425 1.38341 1.46091 1.64102 1.08572 1.16372 1.18587 0.94266 0.90620 0.82134 1.21631 1.44810 0.93337 0.99574 0.89667 1.26082 0.94472 1.04782 0.94278 1.70145 1.45899 1.37147 1.03761 0.85090 0.77818 0.77048 0.79133 1.17527 1.20460 1.20410 1.19913 0.94073 0.99576 0.96172 1.21130 0.94194 0.99202 0.98583 1.21397 0.94672 1.00120 0.98808 1.21483 1.01032 0.97544 0.94428 1.21435 0.93652 0.99375 0.99816 1.21300 0.95598 0.99468 0.97538 0.93135 0.91474 0.91543 0.91817 0.88858 0.85995 0.84648 0.75401 0.99444 0.99277 0.92205 0.86442 0.85001 0.84300 0.83891 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.82 71.98 0.71 -1.85 16 2 C -0.09 -1.55 5.12 30.59 0.16 -1.39 16 3 C -0.02 -0.33 2.44 29.85 0.07 -0.26 16 4 H 0.11 1.73 7.88 -2.39 -0.02 1.71 16 5 S -0.22 -6.32 18.67 -56.49 -1.05 -7.37 16 6 C -0.11 -3.06 6.27 71.23 0.45 -2.62 16 7 C 0.51 21.18 7.85 87.66 0.69 21.87 16 8 O -0.58 -30.31 15.86 -3.03 -0.05 -30.36 16 9 N -0.70 -30.05 5.55 -466.79 -2.59 -32.64 16 10 C 0.27 14.84 5.43 85.63 0.46 15.31 16 11 C -0.56 -30.30 9.28 25.60 0.24 -30.06 16 12 H 0.09 4.18 7.60 -2.91 -0.02 4.15 16 13 C 0.00 0.19 5.46 84.66 0.46 0.66 16 14 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 15 Si 0.99 42.26 29.54 68.60 2.03 44.29 16 16 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 17 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 C -0.10 -1.84 4.41 -19.87 -0.09 -1.93 16 20 C -0.11 -2.38 8.84 22.27 0.20 -2.18 16 21 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 22 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 23 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 24 C -0.12 -1.94 9.67 22.27 0.22 -1.73 16 25 H 0.05 1.06 7.02 -2.39 -0.02 1.05 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.06 1.18 7.58 -2.39 -0.02 1.17 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.12 3.04 7.93 -2.39 -0.02 3.02 16 31 H 0.14 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.41 14.27 8.32 -92.71 -0.77 13.49 16 33 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 34 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 35 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.12 2.63 7.63 -2.91 -0.02 2.61 16 37 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 40 H 0.14 1.67 7.95 -2.91 -0.02 1.64 16 Total: -1.00 -73.69 352.18 3.10 -70.58 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.25 Total: 21.73 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 4.23 Total: -10.01 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -2.30 Total: -88.85 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.05 Total: -30.36 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: -6.32 SS G_CDS: -1.05 Total: -7.37 kcal Total: -73.69 3.10 -70.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757748383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.418 kcal (2) G-P(sol) polarization free energy of solvation -73.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds