Wall clock time and date at job start Tue Mar 31 2020 08:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81396 * 103.00025 * 2 1 4 4 C 1.53008 * 109.47153 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47029 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47001 * 305.00059 * 5 4 3 7 7 C 1.52997 * 109.46778 * 184.99981 * 5 4 3 8 8 N 1.46500 * 109.47026 * 65.00409 * 5 4 3 9 9 C 1.34775 * 119.99765 * 204.99647 * 8 5 4 10 10 O 1.21584 * 120.00262 * 0.02562 * 9 8 5 11 11 C 1.47639 * 119.99623 * 179.97438 * 9 8 5 12 12 C 1.40014 * 119.89302 * 179.97438 * 11 9 8 13 13 C 1.36324 * 120.10641 * 180.23257 * 12 11 9 14 14 C 1.40888 * 119.89069 * 359.52635 * 13 12 11 15 15 C 1.41102 * 120.10372 * 180.22977 * 14 13 12 16 16 H 1.08000 * 119.99913 * 204.78630 * 15 14 13 17 17 C 1.40225 * 120.00169 * 24.78240 * 15 14 13 18 18 N 1.30645 * 119.99670 * 17.74323 * 17 15 14 19 19 Si 1.86801 * 120.00217 * 197.74152 * 17 15 14 20 20 H 1.48496 * 109.47041 * 60.00188 * 19 17 15 21 21 H 1.48497 * 109.46978 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46946 * 299.99947 * 19 17 15 23 23 C 1.40897 * 119.79361 * 0.47331 * 14 13 12 24 24 C 1.36314 * 119.88751 * 359.75684 * 23 14 13 25 25 H 1.09007 * 109.46779 * 60.00037 * 1 2 3 26 26 H 1.08996 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47168 * 300.00473 * 1 2 3 28 28 H 1.09002 * 109.47104 * 59.99942 * 3 2 1 29 29 H 1.08996 * 109.47349 * 299.99401 * 3 2 1 30 30 H 1.09002 * 109.46842 * 60.00174 * 4 3 2 31 31 H 1.08996 * 109.46824 * 300.00115 * 4 3 2 32 32 H 1.08999 * 109.46934 * 180.02562 * 7 5 4 33 33 H 1.08998 * 109.47471 * 300.00374 * 7 5 4 34 34 H 1.09009 * 109.47264 * 60.00627 * 7 5 4 35 35 H 0.97005 * 119.99957 * 24.99620 * 8 5 4 36 36 H 1.07997 * 119.94851 * 359.95986 * 12 11 9 37 37 H 1.07995 * 120.05014 * 179.74690 * 13 12 11 38 38 H 0.97006 * 119.99884 * 179.97438 * 18 17 15 39 39 H 1.07991 * 120.05244 * 179.72938 * 23 14 13 40 40 H 1.08001 * 119.94177 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0865 3.4307 0.0000 6 1 3.5943 3.9168 -0.8423 7 6 5.6015 3.6043 -0.1251 8 7 3.6271 4.0385 1.2513 9 6 3.3500 5.3566 1.2982 10 8 3.4808 6.0412 0.3020 11 6 2.8864 5.9689 2.5591 12 6 2.5996 7.3386 2.6056 13 6 2.1759 7.9095 3.7688 14 6 2.0170 7.1169 4.9227 15 6 1.5740 7.7022 6.1278 16 1 1.8201 7.2427 7.0737 17 6 0.8143 8.8804 6.0973 18 7 0.2247 9.2489 4.9912 19 14 0.6452 9.9230 7.6380 20 1 1.9891 10.3741 8.0803 21 1 -0.2029 11.1061 7.3444 22 1 0.0144 9.1172 8.7141 23 6 2.3068 5.7390 4.8711 24 6 2.7346 5.1782 3.7046 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8031 2.2371 0.8900 29 1 1.8032 2.2371 -0.8900 30 1 4.1616 1.4702 -0.8892 31 1 4.1609 1.4704 0.8908 32 1 5.8467 4.6663 -0.1251 33 1 6.0937 3.1180 0.7172 34 1 5.9434 3.1521 -1.0562 35 1 3.5223 3.4922 2.0460 36 1 2.7186 7.9447 1.7197 37 1 1.9588 8.9668 3.8047 38 1 -0.3012 10.0638 4.9701 39 1 2.1908 5.1285 5.7542 40 1 2.9566 4.1220 3.6639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759133012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:18 Heat of formation + Delta-G solvation = -42.822116 kcal Electronic energy + Delta-G solvation = -20492.772198 eV Core-core repulsion = 17397.367629 eV Total energy + Delta-G solvation = -3095.404569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.34343 -37.36474 -35.99063 -33.90778 -32.15712 -30.38637 -29.81322 -29.21599 -29.00165 -25.92157 -24.05478 -22.27356 -21.23755 -20.42430 -19.70490 -17.54982 -16.91681 -16.37345 -16.03894 -15.39741 -14.70162 -14.44811 -14.21258 -13.97265 -13.94530 -13.74314 -13.37966 -13.21302 -12.94509 -12.74834 -12.45480 -12.23155 -12.16521 -11.80242 -11.52705 -11.40772 -11.28556 -11.21776 -10.99224 -10.79059 -10.64387 -10.16631 -10.08027 -9.55168 -9.34745 -8.98039 -8.64961 -7.86874 -7.71652 -7.58427 -7.03471 -4.61905 1.50301 2.22617 2.40968 2.90971 2.94085 2.97234 3.02117 3.72870 3.74854 3.86318 4.54517 4.62643 4.78520 4.88746 4.94671 4.96933 5.36518 5.42800 5.48802 5.51631 5.57804 5.63881 5.74824 5.83954 5.93142 5.96872 6.21729 6.28291 6.32498 6.78866 6.82319 6.96953 7.05247 7.09409 7.42074 7.60135 7.77039 7.86165 8.03896 8.23778 8.41576 8.61462 8.74039 9.06890 9.88397 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.003206 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.862489 B = 8730.433425 C = 9567.598342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.276 6.276 3 C -0.081 4.081 4 C -0.109 4.109 5 C 0.149 3.851 6 H 0.086 0.914 7 C -0.161 4.161 8 N -0.739 5.739 9 C 0.572 3.428 10 O -0.573 6.573 11 C -0.285 4.285 12 C -0.036 4.036 13 C -0.183 4.183 14 C 0.129 3.871 15 C -0.444 4.444 16 H 0.084 0.916 17 C 0.074 3.926 18 N -0.769 5.769 19 Si 0.914 3.086 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.262 1.262 23 C -0.236 4.236 24 C -0.049 4.049 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.395 0.605 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.288 0.712 39 H 0.097 0.903 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.010 -11.813 -5.537 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.050 6.050 3 C -0.230 4.230 4 C -0.148 4.148 5 C 0.042 3.958 6 H 0.104 0.896 7 C -0.220 4.220 8 N -0.392 5.392 9 C 0.367 3.633 10 O -0.455 6.455 11 C -0.289 4.289 12 C -0.055 4.055 13 C -0.202 4.202 14 C 0.125 3.875 15 C -0.471 4.471 16 H 0.102 0.898 17 C -0.148 4.148 18 N -0.392 5.392 19 Si 0.737 3.263 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.187 1.187 23 C -0.255 4.255 24 C -0.068 4.068 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.231 0.769 36 H 0.118 0.882 37 H 0.138 0.862 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.575 -12.040 -6.363 13.859 hybrid contribution -1.177 1.180 1.056 1.973 sum 1.398 -10.860 -5.307 12.168 Atomic orbital electron populations 1.23362 0.93952 1.06324 1.05188 1.86744 1.07756 1.12322 1.98143 1.23448 1.00414 0.93327 1.05772 1.21652 0.92830 0.96273 1.04032 1.20779 0.94837 0.91330 0.88844 0.89634 1.22164 0.95422 1.02931 1.01449 1.46044 1.70768 1.09877 1.12547 1.18591 0.75289 0.80634 0.88788 1.90634 1.55621 1.61966 1.37236 1.18919 1.21873 0.95402 0.92717 1.20482 0.94992 0.92944 0.97119 1.21016 1.06159 1.00127 0.92908 1.17775 0.86217 0.90521 0.92943 1.19813 1.27002 1.05976 0.94356 0.89778 1.26105 0.93313 0.97308 0.98037 1.69741 1.19977 1.21278 1.28224 0.86259 0.79587 0.79087 0.81327 1.18453 1.20023 1.18685 1.20668 1.12689 0.95101 0.97045 1.20354 0.96943 0.96428 0.93096 0.90512 0.88227 0.90272 0.89438 0.89942 0.89753 0.90461 0.91694 0.92564 0.92115 0.76948 0.88227 0.86191 0.90096 0.88529 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.76 101.05 1.09 0.06 16 2 S -0.28 -2.97 22.38 -107.50 -2.41 -5.37 16 3 C -0.08 -0.89 5.83 37.16 0.22 -0.67 16 4 C -0.11 -1.12 4.76 -26.73 -0.13 -1.25 16 5 C 0.15 1.94 2.57 -67.93 -0.17 1.77 16 6 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 7 C -0.16 -1.96 9.48 37.16 0.35 -1.60 16 8 N -0.74 -11.51 4.48 -54.82 -0.25 -11.76 16 9 C 0.57 11.77 7.73 -12.42 -0.10 11.67 16 10 O -0.57 -13.39 15.98 5.29 0.08 -13.30 16 11 C -0.28 -6.39 5.89 -104.73 -0.62 -7.00 16 12 C -0.04 -0.87 9.52 -39.61 -0.38 -1.25 16 13 C -0.18 -4.65 8.63 -39.27 -0.34 -4.99 16 14 C 0.13 3.25 5.57 -106.80 -0.60 2.66 16 15 C -0.44 -10.97 9.04 -37.75 -0.34 -11.31 16 16 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 17 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 18 N -0.77 -18.71 10.95 55.56 0.61 -18.11 16 19 Si 0.91 17.29 29.60 -169.99 -5.03 12.26 16 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 23 C -0.24 -5.39 9.73 -39.27 -0.38 -5.77 16 24 C -0.05 -1.03 9.47 -39.61 -0.38 -1.40 16 25 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 28 H 0.09 1.04 7.75 -51.92 -0.40 0.64 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.40 5.50 6.60 -40.82 -0.27 5.23 16 36 H 0.10 2.40 7.63 -52.49 -0.40 2.00 16 37 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 38 H 0.29 6.33 8.29 -40.82 -0.34 5.99 16 39 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 40 H 0.09 1.51 6.37 -52.49 -0.33 1.18 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -27.98 348.48 -9.50 -37.48 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -5.90 Total: 11.00 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -1.86 Total: -17.46 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.36 Total: -29.86 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Atomic # 16 Polarization: -2.97 SS G_CDS: -2.41 Total: -5.37 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.98 -9.50 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759133012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.345 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds