Wall clock time and date at job start Tue Mar 31 2020 08:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81396 * 103.00025 * 2 1 4 4 C 1.53008 * 109.47153 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47029 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47001 * 305.00059 * 5 4 3 7 7 C 1.52997 * 109.46778 * 184.99981 * 5 4 3 8 8 N 1.46500 * 109.47026 * 65.00409 * 5 4 3 9 9 C 1.34775 * 119.99765 * 204.99647 * 8 5 4 10 10 O 1.21584 * 120.00262 * 0.02562 * 9 8 5 11 11 C 1.47639 * 119.99623 * 179.97438 * 9 8 5 12 12 C 1.40014 * 119.89302 * 179.97438 * 11 9 8 13 13 C 1.36324 * 120.10641 * 180.23257 * 12 11 9 14 14 C 1.40888 * 119.89069 * 359.52635 * 13 12 11 15 15 C 1.41102 * 120.10372 * 180.22977 * 14 13 12 16 16 H 1.08000 * 119.99913 * 204.78630 * 15 14 13 17 17 C 1.40225 * 120.00169 * 24.78240 * 15 14 13 18 18 N 1.30645 * 119.99670 * 17.74323 * 17 15 14 19 19 Si 1.86801 * 120.00217 * 197.74152 * 17 15 14 20 20 H 1.48496 * 109.47041 * 60.00188 * 19 17 15 21 21 H 1.48497 * 109.46978 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46946 * 299.99947 * 19 17 15 23 23 C 1.40897 * 119.79361 * 0.47331 * 14 13 12 24 24 C 1.36314 * 119.88751 * 359.75684 * 23 14 13 25 25 H 1.09007 * 109.46779 * 60.00037 * 1 2 3 26 26 H 1.08996 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47168 * 300.00473 * 1 2 3 28 28 H 1.09002 * 109.47104 * 59.99942 * 3 2 1 29 29 H 1.08996 * 109.47349 * 299.99401 * 3 2 1 30 30 H 1.09002 * 109.46842 * 60.00174 * 4 3 2 31 31 H 1.08996 * 109.46824 * 300.00115 * 4 3 2 32 32 H 1.08999 * 109.46934 * 180.02562 * 7 5 4 33 33 H 1.08998 * 109.47471 * 300.00374 * 7 5 4 34 34 H 1.09009 * 109.47264 * 60.00627 * 7 5 4 35 35 H 0.97005 * 119.99957 * 24.99620 * 8 5 4 36 36 H 1.07997 * 119.94851 * 359.95986 * 12 11 9 37 37 H 1.07995 * 120.05014 * 179.74690 * 13 12 11 38 38 H 0.97006 * 119.99884 * 179.97438 * 18 17 15 39 39 H 1.07991 * 120.05244 * 179.72938 * 23 14 13 40 40 H 1.08001 * 119.94177 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0865 3.4307 0.0000 6 1 3.5943 3.9168 -0.8423 7 6 5.6015 3.6043 -0.1251 8 7 3.6271 4.0385 1.2513 9 6 3.3500 5.3566 1.2982 10 8 3.4808 6.0412 0.3020 11 6 2.8864 5.9689 2.5591 12 6 2.5996 7.3386 2.6056 13 6 2.1759 7.9095 3.7688 14 6 2.0170 7.1169 4.9227 15 6 1.5740 7.7022 6.1278 16 1 1.8201 7.2427 7.0737 17 6 0.8143 8.8804 6.0973 18 7 0.2247 9.2489 4.9912 19 14 0.6452 9.9230 7.6380 20 1 1.9891 10.3741 8.0803 21 1 -0.2029 11.1061 7.3444 22 1 0.0144 9.1172 8.7141 23 6 2.3068 5.7390 4.8711 24 6 2.7346 5.1782 3.7046 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8031 2.2371 0.8900 29 1 1.8032 2.2371 -0.8900 30 1 4.1616 1.4702 -0.8892 31 1 4.1609 1.4704 0.8908 32 1 5.8467 4.6663 -0.1251 33 1 6.0937 3.1180 0.7172 34 1 5.9434 3.1521 -1.0562 35 1 3.5223 3.4922 2.0460 36 1 2.7186 7.9447 1.7197 37 1 1.9588 8.9668 3.8047 38 1 -0.3012 10.0638 4.9701 39 1 2.1908 5.1285 5.7542 40 1 2.9566 4.1220 3.6639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759133012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:17 Heat of formation + Delta-G solvation = -57.005475 kcal Electronic energy + Delta-G solvation = -20493.387235 eV Core-core repulsion = 17397.367629 eV Total energy + Delta-G solvation = -3096.019606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.90553 -39.05796 -37.33873 -35.69236 -33.47887 -31.94827 -31.42103 -30.58756 -29.75026 -27.67617 -25.08136 -23.85407 -22.89917 -21.78004 -21.29314 -19.35572 -18.49993 -17.41873 -17.10862 -17.09518 -15.87260 -15.78415 -15.74506 -15.46769 -15.03933 -14.85120 -14.79166 -14.43631 -14.12723 -13.99156 -13.91141 -13.64074 -13.40403 -13.20452 -13.05179 -12.81704 -12.65400 -12.39413 -12.36049 -12.20231 -11.82398 -11.73835 -11.35391 -11.11840 -10.98570 -10.66874 -10.05196 -9.56811 -9.41001 -8.79210 -8.69503 -6.48555 0.45583 0.71207 1.15234 1.37562 1.44176 1.51598 1.62778 2.12229 2.18427 2.40646 2.80068 3.68791 3.71533 3.89909 3.94401 4.28806 4.29530 4.32396 4.33096 4.40095 4.41111 4.49993 4.58646 4.78790 4.83282 4.87258 4.96920 4.99504 5.02218 5.13539 5.22206 5.26206 5.31452 5.58480 5.67499 5.79069 5.96782 6.01828 6.20549 6.55991 6.75497 6.76690 6.89815 7.48843 8.15668 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.003206 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.862489 B = 8730.433425 C = 9567.598342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.294 6.294 3 C -0.079 4.079 4 C -0.096 4.096 5 C 0.147 3.853 6 H 0.067 0.933 7 C -0.157 4.157 8 N -0.718 5.718 9 C 0.573 3.427 10 O -0.606 6.606 11 C -0.293 4.293 12 C -0.051 4.051 13 C -0.203 4.203 14 C 0.101 3.899 15 C -0.474 4.474 16 H 0.092 0.908 17 C 0.034 3.966 18 N -0.804 5.804 19 Si 0.988 3.012 20 H -0.258 1.258 21 H -0.268 1.268 22 H -0.253 1.253 23 C -0.247 4.247 24 C -0.037 4.037 25 H 0.082 0.918 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.407 0.593 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.295 0.705 39 H 0.115 0.885 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 -13.976 -4.867 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.068 6.068 3 C -0.227 4.227 4 C -0.135 4.135 5 C 0.041 3.959 6 H 0.085 0.915 7 C -0.215 4.215 8 N -0.371 5.371 9 C 0.367 3.633 10 O -0.491 6.491 11 C -0.298 4.298 12 C -0.070 4.070 13 C -0.223 4.223 14 C 0.098 3.902 15 C -0.501 4.501 16 H 0.110 0.890 17 C -0.185 4.185 18 N -0.427 5.427 19 Si 0.808 3.192 20 H -0.183 1.183 21 H -0.193 1.193 22 H -0.177 1.177 23 C -0.266 4.266 24 C -0.056 4.056 25 H 0.101 0.899 26 H 0.133 0.867 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.244 0.756 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.133 0.867 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.873 -14.259 -5.696 15.621 hybrid contribution -1.266 1.745 0.732 2.277 sum 1.606 -12.514 -4.964 13.559 Atomic orbital electron populations 1.23437 0.92042 1.07463 1.05490 1.86774 1.09968 1.11932 1.98164 1.23390 1.00796 0.93480 1.05076 1.21566 0.92523 0.93886 1.05499 1.20957 0.95376 0.92815 0.86708 0.91466 1.22122 0.94552 1.01311 1.03544 1.45872 1.68959 1.08129 1.14119 1.18358 0.75318 0.82110 0.87560 1.90619 1.57154 1.63246 1.38062 1.19215 1.21263 0.94890 0.94389 1.20553 0.95669 0.94306 0.96494 1.20937 1.07863 0.99610 0.93875 1.18133 0.87041 0.91885 0.93136 1.20137 1.28018 1.07462 0.94520 0.88995 1.27011 0.92294 0.97929 1.01225 1.69798 1.20559 1.22002 1.30376 0.85146 0.79575 0.77333 0.77158 1.18262 1.19257 1.17676 1.20943 1.12742 0.94399 0.98512 1.20683 0.94954 0.98359 0.91562 0.89930 0.86704 0.90273 0.90497 0.90319 0.87963 0.89259 0.94718 0.91154 0.89498 0.75604 0.89196 0.87934 0.89393 0.86679 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 10.76 113.37 1.22 -0.52 16 2 S -0.29 -5.68 22.38 -56.49 -1.26 -6.94 16 3 C -0.08 -1.56 5.83 71.98 0.42 -1.14 16 4 C -0.10 -1.70 4.76 30.60 0.15 -1.55 16 5 C 0.15 3.56 2.57 44.99 0.12 3.68 16 6 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16 7 C -0.16 -3.48 9.48 71.98 0.68 -2.80 16 8 N -0.72 -21.10 4.48 -445.60 -2.00 -23.10 16 9 C 0.57 23.39 7.73 86.73 0.67 24.06 16 10 O -0.61 -28.81 15.98 -3.98 -0.06 -28.87 16 11 C -0.29 -13.17 5.89 -19.93 -0.12 -13.28 16 12 C -0.05 -2.57 9.52 22.25 0.21 -2.36 16 13 C -0.20 -10.81 8.63 22.47 0.19 -10.61 16 14 C 0.10 5.22 5.57 -21.28 -0.12 5.10 16 15 C -0.47 -23.78 9.04 23.46 0.21 -23.56 16 16 H 0.09 4.30 7.91 -2.91 -0.02 4.27 16 17 C 0.03 1.61 5.14 85.35 0.44 2.05 16 18 N -0.80 -40.22 10.95 21.87 0.24 -39.98 16 19 Si 0.99 35.29 29.60 68.60 2.03 37.32 16 20 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 21 H -0.27 -9.15 7.11 99.48 0.71 -8.45 16 22 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 23 C -0.25 -11.12 9.73 22.47 0.22 -10.90 16 24 C -0.04 -1.49 9.47 22.25 0.21 -1.27 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 1.67 7.75 -2.39 -0.02 1.66 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.41 10.08 6.60 -92.70 -0.61 9.47 16 36 H 0.09 4.59 7.63 -2.91 -0.02 4.57 16 37 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 38 H 0.29 13.28 8.29 -92.70 -0.77 12.51 16 39 H 0.12 4.67 8.06 -2.92 -0.02 4.64 16 40 H 0.13 4.07 6.37 -2.91 -0.02 4.05 16 Total: -1.00 -62.60 348.48 3.87 -58.73 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: 0.42 Total: 35.97 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 4.50 Total: -33.13 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -1.76 Total: -63.08 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.06 Total: -28.87 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Atomic # 16 Polarization: -5.68 SS G_CDS: -1.26 Total: -6.94 kcal Total: -62.60 3.87 -58.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759133012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.722 kcal (2) G-P(sol) polarization free energy of solvation -62.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds