Wall clock time and date at job start Tue Mar 31 2020 06:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47115 * 2 1 4 4 N 1.46492 * 109.47258 * 120.00029 * 2 1 3 5 5 C 1.46504 * 120.00403 * 305.17542 * 4 2 1 6 6 C 1.50701 * 109.47342 * 270.00456 * 5 4 2 7 7 H 1.07999 * 120.00005 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00170 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99711 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00233 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47499 * 89.99560 * 10 8 6 12 12 H 1.48500 * 109.47019 * 210.00089 * 10 8 6 13 13 H 1.48504 * 109.47084 * 329.99544 * 10 8 6 14 14 C 1.34781 * 120.00219 * 125.17988 * 4 2 1 15 15 O 1.21559 * 120.00052 * 185.72396 * 14 4 2 16 16 C 1.47755 * 119.99348 * 5.72640 * 14 4 2 17 17 C 1.39888 * 120.01724 * 224.59015 * 16 14 4 18 18 C 1.37868 * 120.25361 * 179.97438 * 17 16 14 19 19 C 1.38461 * 120.29979 * 0.02562 * 18 17 16 20 20 F 1.35095 * 119.98151 * 179.97438 * 19 18 17 21 21 C 1.40269 * 120.03426 * 359.97438 * 19 18 17 22 22 C 1.47013 * 120.12204 * 179.97438 * 21 19 18 23 23 O 1.21268 * 120.00546 * 0.02562 * 22 21 19 24 24 C 1.39196 * 120.02688 * 44.88736 * 16 14 4 25 25 H 1.09003 * 109.46612 * 299.99547 * 1 2 3 26 26 H 1.08990 * 109.47113 * 59.99764 * 1 2 3 27 27 H 1.08996 * 109.46846 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46753 * 240.00111 * 2 1 3 29 29 H 1.08996 * 109.47202 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46891 * 300.00506 * 3 2 1 31 31 H 1.09000 * 109.46877 * 59.99752 * 3 2 1 32 32 H 1.09003 * 109.46801 * 29.99964 * 5 4 2 33 33 H 1.08998 * 109.46950 * 149.99794 * 5 4 2 34 34 H 0.96999 * 120.00121 * 180.02562 * 9 8 6 35 35 H 1.07999 * 119.87676 * 359.97438 * 17 16 14 36 36 H 1.08000 * 119.85425 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.00007 * 179.72749 * 22 21 19 38 38 H 1.07996 * 120.15123 * 0.02562 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5735 -0.2597 2.5238 6 6 2.5159 0.7906 3.0530 7 1 3.3618 1.1053 2.4599 8 6 2.2981 1.3497 4.2943 9 7 1.2677 0.9668 5.0163 10 14 3.4657 2.6520 4.9500 11 1 2.9905 3.9966 4.5359 12 1 3.5086 2.5770 6.4325 13 1 4.8262 2.4177 4.4029 14 6 2.8771 -1.7224 1.0752 15 8 3.2013 -2.3616 2.0571 16 6 3.4243 -2.0765 -0.2508 17 6 3.4802 -3.4161 -0.6498 18 6 3.9893 -3.7519 -1.8862 19 6 4.4501 -2.7667 -2.7431 20 9 4.9482 -3.1030 -3.9530 21 6 4.3999 -1.4195 -2.3555 22 6 4.8891 -0.3719 -3.2636 23 8 5.3366 -0.6715 -4.3501 24 6 3.8903 -1.0779 -1.1013 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.5686 0.1565 2.4529 33 1 1.5659 -1.1148 3.1996 34 1 1.1142 1.3604 5.8895 35 1 3.1231 -4.1902 0.0132 36 1 4.0298 -4.7882 -2.1876 37 1 4.8454 0.6651 -2.9649 38 1 3.8535 -0.0431 -0.7944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865082869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:20 Heat of formation + Delta-G solvation = -103.586204 kcal Electronic energy + Delta-G solvation = -23683.673440 eV Core-core repulsion = 20019.420766 eV Total energy + Delta-G solvation = -3664.252674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.10257 -41.55542 -40.19225 -38.82132 -37.66002 -34.91917 -32.84373 -32.46413 -32.17787 -29.20182 -28.03549 -26.08884 -25.36291 -24.32528 -23.06517 -22.13639 -19.97716 -18.75187 -18.57733 -18.50544 -18.00701 -17.06551 -16.85365 -16.81891 -16.30895 -15.99595 -15.71458 -15.32430 -15.17204 -15.12868 -14.59407 -14.42670 -14.09606 -14.01327 -13.84790 -13.42834 -13.30727 -13.06267 -12.86135 -12.75741 -12.55537 -12.43856 -12.19287 -12.06394 -11.70217 -11.49830 -10.97962 -10.72864 -10.56577 -10.30925 -9.91001 -9.44626 -8.16342 -6.27952 -0.66811 -0.22004 1.21952 1.40637 1.43451 1.52460 1.81359 2.20377 2.42864 2.51629 2.91175 3.14555 3.16582 3.38831 3.55261 3.88009 3.99285 3.99686 4.28745 4.34815 4.41084 4.49463 4.64438 4.78378 4.83722 4.87949 4.89916 5.03345 5.06517 5.12553 5.16593 5.27910 5.45366 5.51903 5.62761 5.68156 5.88043 6.12725 6.35190 6.70731 6.81167 7.27022 7.44429 8.91266 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020062 B = 0.004516 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.335615 B = 6199.249458 C = 6455.418600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 C -0.161 4.161 4 N -0.585 5.585 5 C 0.260 3.740 6 C -0.526 4.526 7 H 0.062 0.938 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.265 1.265 12 H -0.289 1.289 13 H -0.271 1.271 14 C 0.543 3.457 15 O -0.589 6.589 16 C -0.154 4.154 17 C -0.011 4.011 18 C -0.159 4.159 19 C 0.157 3.843 20 F -0.125 7.125 21 C -0.232 4.232 22 C 0.392 3.608 23 O -0.490 6.490 24 C -0.002 4.002 25 H 0.043 0.957 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.110 0.890 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.031 0.969 33 H -0.005 1.005 34 H 0.264 0.736 35 H 0.149 0.851 36 H 0.174 0.826 37 H 0.165 0.835 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.058 -2.088 -17.293 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.015 3.985 3 C -0.219 4.219 4 N -0.314 5.314 5 C 0.139 3.861 6 C -0.564 4.564 7 H 0.080 0.920 8 C -0.191 4.191 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.190 1.190 12 H -0.215 1.215 13 H -0.195 1.195 14 C 0.332 3.668 15 O -0.471 6.471 16 C -0.158 4.158 17 C -0.030 4.030 18 C -0.177 4.177 19 C 0.137 3.863 20 F -0.104 7.104 21 C -0.234 4.234 22 C 0.252 3.748 23 O -0.364 6.364 24 C -0.020 4.020 25 H 0.062 0.938 26 H 0.116 0.884 27 H 0.070 0.930 28 H 0.128 0.872 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.013 0.987 34 H 0.073 0.927 35 H 0.166 0.834 36 H 0.191 0.809 37 H 0.180 0.820 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.355 -2.521 -17.251 17.593 hybrid contribution 0.327 0.258 1.162 1.235 sum 2.683 -2.263 -16.089 16.467 Atomic orbital electron populations 1.22123 0.94362 1.02045 1.03087 1.21639 0.95431 0.94473 0.86997 1.22247 1.01301 0.95036 1.03320 1.48291 1.43469 1.30771 1.08897 1.18780 0.95077 0.93509 0.78684 1.21670 1.11305 1.21169 1.02284 0.92003 1.25771 0.97023 0.99326 0.96935 1.70055 1.30123 1.44390 1.12502 0.85523 0.79237 0.79535 0.77186 1.18971 1.21468 1.19530 1.18706 0.79370 0.80280 0.88484 1.90747 1.61472 1.53742 1.41157 1.19948 1.05636 0.95634 0.94541 1.21378 0.92034 0.94836 0.94750 1.21264 1.02021 1.01001 0.93414 1.18414 0.93713 0.93269 0.80876 1.91567 1.84121 1.92901 1.41767 1.21156 1.09341 0.94353 0.98567 1.24625 0.71308 0.95404 0.83462 1.90583 1.35124 1.86982 1.23729 1.21726 0.90046 1.00615 0.89661 0.93770 0.88397 0.93032 0.87249 0.92209 0.88572 0.93172 0.95065 0.98705 0.92706 0.83367 0.80880 0.81958 0.81650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 9.07 71.98 0.65 -3.45 16 2 C 0.12 3.21 2.40 45.00 0.11 3.32 16 3 C -0.16 -4.08 8.22 71.98 0.59 -3.49 16 4 N -0.58 -22.77 2.39 -805.62 -1.92 -24.69 16 5 C 0.26 13.11 4.77 85.63 0.41 13.52 16 6 C -0.53 -27.94 7.85 25.60 0.20 -27.74 16 7 H 0.06 3.18 7.59 -2.91 -0.02 3.16 16 8 C 0.01 0.44 5.46 84.65 0.46 0.90 16 9 N -0.93 -54.39 13.29 21.45 0.28 -54.10 16 10 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 11 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 12 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 14 C 0.54 21.41 7.24 86.76 0.63 22.04 16 15 O -0.59 -29.40 16.53 -3.90 -0.06 -29.46 16 16 C -0.15 -4.31 4.94 -20.13 -0.10 -4.41 16 17 C -0.01 -0.26 9.67 22.58 0.22 -0.04 16 18 C -0.16 -3.02 9.99 22.24 0.22 -2.80 16 19 C 0.16 3.41 7.30 22.82 0.17 3.57 16 20 F -0.13 -3.09 15.53 44.97 0.70 -2.39 16 21 C -0.23 -4.63 5.87 -20.15 -0.12 -4.74 16 22 C 0.39 6.81 11.45 70.12 0.80 7.62 16 23 O -0.49 -12.56 16.15 -2.99 -0.05 -12.61 16 24 C 0.00 -0.04 7.14 22.84 0.16 0.12 16 25 H 0.04 1.39 6.52 -2.39 -0.02 1.37 16 26 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.11 2.37 4.79 -2.39 -0.01 2.36 16 29 H 0.06 1.42 6.53 -2.39 -0.02 1.41 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.66 6.93 -2.39 -0.02 1.65 16 32 H 0.03 1.61 6.17 -2.39 -0.01 1.59 16 33 H -0.01 -0.31 7.35 -2.39 -0.02 -0.33 16 34 H 0.26 14.63 8.31 -92.71 -0.77 13.85 16 35 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 36 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 38 H 0.17 3.12 5.09 -2.91 -0.01 3.11 16 Total: -1.00 -74.42 323.96 6.47 -67.95 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.09 Total: 5.94 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 4.41 Total: 4.43 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -1.64 Total: -78.79 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -0.11 Total: -42.07 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.70 Total: -2.39 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -74.42 6.47 -67.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865082869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.640 kcal (2) G-P(sol) polarization free energy of solvation -74.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds