Wall clock time and date at job start Tue Mar 31 2020 07:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.82267 * 2 1 4 4 C 1.51570 * 109.88406 * 239.08008 * 2 1 3 5 5 S 1.75749 * 125.34426 * 49.69158 * 4 2 1 6 6 C 1.75737 * 91.04387 * 179.69371 * 5 4 2 7 7 C 1.32900 * 109.57762 * 0.12960 * 6 5 4 8 8 C 1.34636 * 124.55157 * 229.71677 * 4 2 1 9 9 C 1.52240 * 123.14455 * 0.73006 * 8 4 2 10 10 C 1.53516 * 109.15559 * 340.58595 * 9 8 4 11 11 N 1.47073 * 108.67489 * 47.17069 * 10 9 8 12 12 C 1.34777 * 121.08045 * 115.20965 * 11 10 9 13 13 O 1.21287 * 119.99672 * 174.21426 * 12 11 10 14 14 C 1.50695 * 120.00130 * 353.92930 * 12 11 10 15 15 C 1.53005 * 109.46829 * 180.27598 * 14 12 11 16 16 C 1.53000 * 109.46875 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47013 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99935 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00011 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00181 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00097 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47086 * 90.00043 * 21 19 17 23 23 H 1.48506 * 109.47292 * 210.00163 * 21 19 17 24 24 H 1.48499 * 109.47241 * 330.00245 * 21 19 17 25 25 H 1.09002 * 109.46963 * 309.55810 * 1 2 3 26 26 H 1.08998 * 109.47660 * 69.56540 * 1 2 3 27 27 H 1.09002 * 109.46773 * 189.56128 * 1 2 3 28 28 H 1.08003 * 125.21266 * 180.15827 * 6 5 4 29 29 H 1.08003 * 122.12211 * 180.11623 * 7 6 5 30 30 H 1.09005 * 109.51589 * 100.59510 * 9 8 4 31 31 H 1.09002 * 109.52189 * 220.70980 * 9 8 4 32 32 H 1.08998 * 109.68733 * 287.41970 * 10 9 8 33 33 H 1.09003 * 109.70742 * 166.93125 * 10 9 8 34 34 H 1.08994 * 109.47630 * 300.28016 * 14 12 11 35 35 H 1.09003 * 109.46956 * 60.28151 * 14 12 11 36 36 H 1.08994 * 109.47356 * 300.00586 * 15 14 12 37 37 H 1.09003 * 109.46900 * 60.00519 * 15 14 12 38 38 H 1.08994 * 109.47554 * 300.00399 * 16 15 14 39 39 H 1.09003 * 109.46987 * 60.00506 * 16 15 14 40 40 H 0.96997 * 120.00141 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0455 -0.7324 -1.2228 5 16 1.5192 -0.4479 -2.8753 6 6 2.6222 -1.6788 -3.4725 7 6 3.2890 -2.2114 -2.4537 8 6 2.9795 -1.7018 -1.1949 9 6 3.6277 -2.1964 0.0907 10 6 3.4355 -1.1420 1.1898 11 7 2.0294 -0.7108 1.1881 12 6 1.2259 -0.9539 2.2425 13 8 0.1016 -0.4994 2.2656 14 6 1.7220 -1.7956 3.3898 15 6 0.6202 -1.9213 4.4439 16 6 1.1242 -2.7754 5.6090 17 6 0.0387 -2.8997 6.6470 18 1 -0.9152 -2.4181 6.4910 19 6 0.2636 -3.6283 7.7957 20 7 1.4255 -4.2143 7.9859 21 14 -1.0816 -3.7818 9.0827 22 1 -1.9159 -4.9741 8.7869 23 1 -0.4667 -3.9289 10.4264 24 1 -1.9316 -2.5644 9.0580 25 1 -0.3633 0.6545 0.7923 26 1 -0.3634 0.3588 -0.9629 27 1 -0.3633 -1.0134 0.1707 28 1 2.7404 -1.9592 -4.5088 29 1 4.0245 -2.9899 -2.5930 30 1 3.1615 -3.1330 0.3967 31 1 4.6926 -2.3574 -0.0769 32 1 4.0801 -0.2852 0.9934 33 1 3.6839 -1.5726 2.1598 34 1 1.9898 -2.7868 3.0240 35 1 2.5981 -1.3235 3.8345 36 1 0.3524 -0.9301 4.8096 37 1 -0.2559 -2.3934 3.9992 38 1 1.3922 -3.7666 5.2436 39 1 2.0001 -2.3029 6.0536 40 1 1.5838 -4.7266 8.7942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882181375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:09 Heat of formation + Delta-G solvation = -9.566974 kcal Electronic energy + Delta-G solvation = -21021.249548 eV Core-core repulsion = 17927.287030 eV Total energy + Delta-G solvation = -3093.962518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.49921 -38.40406 -35.67587 -34.38943 -33.01213 -31.80687 -30.90636 -27.94966 -27.36629 -25.26539 -24.05728 -22.71365 -21.99486 -20.34237 -19.39198 -17.91229 -17.70013 -16.58067 -16.08842 -16.06338 -15.27430 -15.20414 -14.67141 -14.41214 -13.95870 -13.63288 -13.42205 -13.22176 -12.78542 -12.68211 -12.29839 -12.24907 -11.99269 -11.76111 -11.73050 -11.48882 -11.46585 -11.26460 -10.87430 -10.79607 -10.54656 -10.50874 -9.66370 -9.40824 -9.16254 -8.97168 -8.83573 -8.63587 -8.50551 -8.31184 -5.97008 -3.98259 0.76945 1.35614 1.76662 2.44326 2.86796 2.99445 3.35414 3.41217 3.46098 4.37234 4.49554 4.51021 4.72142 4.79936 4.99962 5.04416 5.13242 5.23547 5.27390 5.34730 5.39176 5.48389 5.63144 5.69360 5.71360 5.75905 5.82863 5.97908 6.13818 6.20156 6.27860 6.33486 6.57962 6.73451 6.93971 7.16817 7.46725 7.71784 7.84561 8.03801 8.40629 8.47918 9.08852 9.65708 11.14511 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.032902 B = 0.003000 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.811447 B = 9330.559123 C = 9788.915838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.218 3.782 3 H 0.083 0.917 4 C -0.193 4.193 5 S 0.111 5.889 6 C -0.219 4.219 7 C -0.127 4.127 8 C -0.099 4.099 9 C -0.075 4.075 10 C 0.107 3.893 11 N -0.618 5.618 12 C 0.521 3.479 13 O -0.527 6.527 14 C -0.137 4.137 15 C -0.094 4.094 16 C 0.021 3.979 17 C -0.517 4.517 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.164 0.836 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.240 6.708 -23.392 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.113 3.887 3 H 0.101 0.899 4 C -0.311 4.311 5 S 0.376 5.624 6 C -0.354 4.354 7 C -0.157 4.157 8 C -0.112 4.112 9 C -0.115 4.115 10 C -0.016 4.016 11 N -0.354 5.354 12 C 0.311 3.689 13 O -0.403 6.403 14 C -0.177 4.177 15 C -0.133 4.133 16 C -0.016 4.016 17 C -0.556 4.556 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.112 0.888 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.181 0.819 29 H 0.156 0.844 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.649 7.827 -23.953 25.825 hybrid contribution 0.581 -1.278 1.085 1.774 sum 6.230 6.549 -22.868 24.589 Atomic orbital electron populations 1.22230 0.91536 1.04629 1.01554 1.19740 0.95606 0.93429 0.79890 0.89941 1.25222 1.03536 1.04237 0.98068 1.84126 1.41390 1.38665 0.98256 1.25401 1.03311 1.03563 1.03165 1.20054 1.02222 1.02222 0.91221 1.19525 0.98598 0.97452 0.95579 1.21016 1.00625 0.99088 0.90785 1.21825 0.81930 0.97666 1.00187 1.48369 1.11685 1.59005 1.16382 1.21227 0.84919 0.79981 0.82796 1.90672 1.19778 1.50923 1.78940 1.21900 1.02097 0.99209 0.94507 1.21455 0.95622 1.01275 0.94899 1.19124 0.96496 0.94408 0.91584 1.21273 0.99784 1.31307 1.03211 0.92590 1.25016 0.95544 0.95677 0.98262 1.69960 1.22515 1.34123 1.27167 0.86600 0.82066 0.78509 0.80893 1.20686 1.21265 1.19833 0.88809 0.93454 0.91628 0.81856 0.84433 0.89788 0.89443 0.90812 0.88210 0.89398 0.89397 0.92669 0.92727 0.96657 0.96619 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 7.65 37.16 0.28 -1.61 16 2 C 0.22 2.66 3.80 -68.28 -0.26 2.41 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.19 -2.16 5.87 -35.16 -0.21 -2.36 16 5 S 0.11 1.06 22.53 -107.50 -2.42 -1.36 16 6 C -0.22 -1.88 11.20 28.89 0.32 -1.56 16 7 C -0.13 -1.15 9.99 -41.03 -0.41 -1.56 16 8 C -0.10 -1.03 5.80 -104.74 -0.61 -1.64 16 9 C -0.07 -0.67 6.33 -26.85 -0.17 -0.84 16 10 C 0.11 1.04 6.28 -3.46 -0.02 1.02 16 11 N -0.62 -7.98 2.94 -165.65 -0.49 -8.46 16 12 C 0.52 8.39 7.40 -10.99 -0.08 8.31 16 13 O -0.53 -10.06 12.12 5.55 0.07 -10.00 16 14 C -0.14 -2.25 4.12 -27.88 -0.11 -2.37 16 15 C -0.09 -2.02 4.44 -26.73 -0.12 -2.14 16 16 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 17 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 21 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.09 1.40 6.40 -51.93 -0.33 1.07 16 26 H 0.05 0.53 7.46 -51.93 -0.39 0.15 16 27 H 0.06 1.01 7.37 -51.93 -0.38 0.63 16 28 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 29 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.89 6.02 -51.93 -0.31 0.58 16 34 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 35 H 0.09 1.30 7.51 -51.93 -0.39 0.91 16 36 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -32.63 334.26 -10.01 -42.64 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.99 Total: -2.85 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -1.93 Total: -15.71 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.25 Total: -34.77 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -10.00 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.42 Total: -1.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.63 -10.01 -42.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882181375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.070 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds