Wall clock time and date at job start Tue Mar 31 2020 07:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.82267 * 2 1 4 4 C 1.51570 * 109.88406 * 239.08008 * 2 1 3 5 5 S 1.75749 * 125.34426 * 49.69158 * 4 2 1 6 6 C 1.75737 * 91.04387 * 179.69371 * 5 4 2 7 7 C 1.32900 * 109.57762 * 0.12960 * 6 5 4 8 8 C 1.34636 * 124.55157 * 229.71677 * 4 2 1 9 9 C 1.52240 * 123.14455 * 0.73006 * 8 4 2 10 10 C 1.53516 * 109.15559 * 340.58595 * 9 8 4 11 11 N 1.47073 * 108.67489 * 47.17069 * 10 9 8 12 12 C 1.34777 * 121.08045 * 115.20965 * 11 10 9 13 13 O 1.21287 * 119.99672 * 174.21426 * 12 11 10 14 14 C 1.50695 * 120.00130 * 353.92930 * 12 11 10 15 15 C 1.53005 * 109.46829 * 180.27598 * 14 12 11 16 16 C 1.53000 * 109.46875 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47013 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99935 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00011 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00181 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00097 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47086 * 90.00043 * 21 19 17 23 23 H 1.48506 * 109.47292 * 210.00163 * 21 19 17 24 24 H 1.48499 * 109.47241 * 330.00245 * 21 19 17 25 25 H 1.09002 * 109.46963 * 309.55810 * 1 2 3 26 26 H 1.08998 * 109.47660 * 69.56540 * 1 2 3 27 27 H 1.09002 * 109.46773 * 189.56128 * 1 2 3 28 28 H 1.08003 * 125.21266 * 180.15827 * 6 5 4 29 29 H 1.08003 * 122.12211 * 180.11623 * 7 6 5 30 30 H 1.09005 * 109.51589 * 100.59510 * 9 8 4 31 31 H 1.09002 * 109.52189 * 220.70980 * 9 8 4 32 32 H 1.08998 * 109.68733 * 287.41970 * 10 9 8 33 33 H 1.09003 * 109.70742 * 166.93125 * 10 9 8 34 34 H 1.08994 * 109.47630 * 300.28016 * 14 12 11 35 35 H 1.09003 * 109.46956 * 60.28151 * 14 12 11 36 36 H 1.08994 * 109.47356 * 300.00586 * 15 14 12 37 37 H 1.09003 * 109.46900 * 60.00519 * 15 14 12 38 38 H 1.08994 * 109.47554 * 300.00399 * 16 15 14 39 39 H 1.09003 * 109.46987 * 60.00506 * 16 15 14 40 40 H 0.96997 * 120.00141 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0455 -0.7324 -1.2228 5 16 1.5192 -0.4479 -2.8753 6 6 2.6222 -1.6788 -3.4725 7 6 3.2890 -2.2114 -2.4537 8 6 2.9795 -1.7018 -1.1949 9 6 3.6277 -2.1964 0.0907 10 6 3.4355 -1.1420 1.1898 11 7 2.0294 -0.7108 1.1881 12 6 1.2259 -0.9539 2.2425 13 8 0.1016 -0.4994 2.2656 14 6 1.7220 -1.7956 3.3898 15 6 0.6202 -1.9213 4.4439 16 6 1.1242 -2.7754 5.6090 17 6 0.0387 -2.8997 6.6470 18 1 -0.9152 -2.4181 6.4910 19 6 0.2636 -3.6283 7.7957 20 7 1.4255 -4.2143 7.9859 21 14 -1.0816 -3.7818 9.0827 22 1 -1.9159 -4.9741 8.7869 23 1 -0.4667 -3.9289 10.4264 24 1 -1.9316 -2.5644 9.0580 25 1 -0.3633 0.6545 0.7923 26 1 -0.3634 0.3588 -0.9629 27 1 -0.3633 -1.0134 0.1707 28 1 2.7404 -1.9592 -4.5088 29 1 4.0245 -2.9899 -2.5930 30 1 3.1615 -3.1330 0.3967 31 1 4.6926 -2.3574 -0.0769 32 1 4.0801 -0.2852 0.9934 33 1 3.6839 -1.5726 2.1598 34 1 1.9898 -2.7868 3.0240 35 1 2.5981 -1.3235 3.8345 36 1 0.3524 -0.9301 4.8096 37 1 -0.2559 -2.3934 3.9992 38 1 1.3922 -3.7666 5.2436 39 1 2.0001 -2.3029 6.0536 40 1 1.5838 -4.7266 8.7942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882181375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:09 Heat of formation + Delta-G solvation = -27.508653 kcal Electronic energy + Delta-G solvation = -21022.027557 eV Core-core repulsion = 17927.287030 eV Total energy + Delta-G solvation = -3094.740527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.57094 -39.35734 -36.68177 -36.16223 -34.44676 -33.38571 -31.85220 -29.58850 -28.38919 -26.32447 -25.65636 -23.83025 -22.88006 -21.97793 -20.54314 -18.91401 -18.59681 -18.33630 -17.44694 -17.16858 -16.48278 -16.46004 -15.96009 -15.70821 -15.12471 -14.75448 -14.51371 -14.17463 -14.12126 -13.84540 -13.71967 -13.58908 -13.23935 -13.04399 -12.84232 -12.62894 -12.57532 -12.55438 -12.40157 -12.33938 -12.08218 -11.60110 -11.53587 -11.39929 -11.19857 -10.53391 -10.30551 -9.80194 -9.50688 -9.23659 -8.19577 -6.29190 0.03798 0.61487 1.06400 1.39968 1.40800 1.52365 1.62537 1.73927 1.96936 2.42132 3.13459 3.46262 3.68713 3.86719 3.95477 4.07586 4.14347 4.21678 4.25652 4.33805 4.47250 4.51231 4.59402 4.66620 4.79821 4.86966 4.91357 4.97555 5.07173 5.10726 5.15353 5.18139 5.25076 5.41453 5.51463 5.55238 5.61571 5.76994 5.87711 6.27620 6.38297 6.86141 7.18760 7.39348 8.91904 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.032902 B = 0.003000 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.811447 B = 9330.559123 C = 9788.915838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.217 3.783 3 H 0.093 0.907 4 C -0.220 4.220 5 S 0.106 5.894 6 C -0.211 4.211 7 C -0.138 4.138 8 C -0.102 4.102 9 C -0.073 4.073 10 C 0.099 3.901 11 N -0.611 5.611 12 C 0.520 3.480 13 O -0.567 6.567 14 C -0.127 4.127 15 C -0.080 4.080 16 C 0.028 3.972 17 C -0.547 4.547 18 H 0.050 0.950 19 C 0.004 3.996 20 N -0.928 5.928 21 Si 0.960 3.040 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.269 1.269 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.190 0.810 29 H 0.160 0.840 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.041 0.959 37 H 0.038 0.962 38 H 0.000 1.000 39 H 0.002 0.998 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.412 6.433 -24.560 26.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.113 3.887 3 H 0.110 0.890 4 C -0.338 4.338 5 S 0.371 5.629 6 C -0.346 4.346 7 C -0.168 4.168 8 C -0.115 4.115 9 C -0.113 4.113 10 C -0.022 4.022 11 N -0.346 5.346 12 C 0.310 3.690 13 O -0.446 6.446 14 C -0.167 4.167 15 C -0.119 4.119 16 C -0.009 4.009 17 C -0.585 4.585 18 H 0.068 0.932 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.785 3.215 22 H -0.198 1.198 23 H -0.203 1.203 24 H -0.193 1.193 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.207 0.793 29 H 0.178 0.822 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.019 0.981 39 H 0.021 0.979 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.856 7.554 -25.153 27.143 hybrid contribution 0.264 -1.205 1.368 1.842 sum 7.120 6.349 -23.785 25.627 Atomic orbital electron populations 1.22051 0.92841 1.02450 1.01599 1.19739 0.94622 0.94155 0.80233 0.88965 1.25122 1.04881 1.05526 0.98228 1.84120 1.41921 1.39348 0.97486 1.25783 1.02038 1.02346 1.04422 1.20289 1.02966 1.02905 0.90632 1.19858 0.98047 0.96819 0.96757 1.21067 1.02272 0.98204 0.89744 1.22137 0.80048 0.98862 1.01200 1.48346 1.12658 1.58000 1.15577 1.21054 0.84672 0.79848 0.83453 1.90673 1.21445 1.52600 1.79876 1.21716 1.00741 1.00669 0.93578 1.21155 0.96667 0.99238 0.94802 1.19000 0.95342 0.94162 0.92436 1.21692 1.00430 1.31800 1.04622 0.93166 1.25881 0.97998 0.95103 1.00405 1.70059 1.24276 1.34523 1.28006 0.85528 0.79108 0.78746 0.78168 1.19779 1.20258 1.19327 0.90877 0.91790 0.94216 0.79329 0.82238 0.90367 0.86533 0.88926 0.87345 0.87787 0.87277 0.94009 0.94331 0.98128 0.97922 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 7.65 71.98 0.55 -3.06 16 2 C 0.22 5.18 3.80 44.39 0.17 5.35 16 3 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 4 C -0.22 -4.63 5.87 25.14 0.15 -4.48 16 5 S 0.11 1.88 22.53 -56.49 -1.27 0.60 16 6 C -0.21 -3.04 11.20 66.64 0.75 -2.29 16 7 C -0.14 -2.10 9.99 21.35 0.21 -1.89 16 8 C -0.10 -1.89 5.80 -19.94 -0.12 -2.01 16 9 C -0.07 -1.11 6.33 30.52 0.19 -0.92 16 10 C 0.10 1.70 6.28 86.44 0.54 2.24 16 11 N -0.61 -15.25 2.94 -796.37 -2.34 -17.59 16 12 C 0.52 16.81 7.40 87.66 0.65 17.46 16 13 O -0.57 -22.41 12.12 -3.05 -0.04 -22.45 16 14 C -0.13 -4.14 4.12 29.85 0.12 -4.02 16 15 C -0.08 -3.54 4.44 30.60 0.14 -3.40 16 16 C 0.03 1.46 4.97 29.85 0.15 1.61 16 17 C -0.55 -32.25 9.11 25.60 0.23 -32.02 16 18 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 19 C 0.00 0.24 5.46 84.65 0.46 0.70 16 20 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 21 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 H 0.07 2.29 6.40 -2.39 -0.02 2.28 16 26 H 0.06 1.47 7.46 -2.39 -0.02 1.45 16 27 H 0.04 1.27 7.37 -2.39 -0.02 1.25 16 28 H 0.19 1.66 8.06 -2.91 -0.02 1.63 16 29 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 30 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.12 1.11 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.11 1.67 6.02 -2.39 -0.01 1.66 16 34 H 0.10 3.05 8.11 -2.39 -0.02 3.03 16 35 H 0.11 3.08 7.51 -2.39 -0.02 3.06 16 36 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 37 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 38 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -71.36 334.26 3.88 -67.48 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 1.02 Total: 7.30 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 4.20 Total: -26.72 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -2.05 Total: -73.50 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.04 Total: -22.45 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -1.27 Total: 0.60 kcal Total: -71.36 3.88 -67.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882181375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.968 kcal (2) G-P(sol) polarization free energy of solvation -71.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds